Wall clock time and date at job start Tue Mar 31 2020 14:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46784 * 2 1 4 4 C 1.52993 * 109.47315 * 305.19447 * 3 2 1 5 5 C 1.53004 * 109.47177 * 295.36571 * 4 3 2 6 6 C 1.53005 * 109.47234 * 65.19471 * 3 2 1 7 7 N 1.46505 * 109.47245 * 64.99841 * 6 3 2 8 8 C 1.46503 * 119.99857 * 90.00050 * 7 6 3 9 9 C 1.50697 * 109.47079 * 91.23672 * 8 7 6 10 10 H 1.07996 * 119.99885 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99806 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00154 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99798 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47306 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47181 * 120.00467 * 13 11 9 16 16 H 1.48507 * 109.47040 * 240.00093 * 13 11 9 17 17 C 1.34770 * 120.00128 * 270.00344 * 7 6 3 18 18 O 1.21618 * 119.99954 * 6.07590 * 17 7 6 19 19 C 1.47378 * 120.00394 * 186.07264 * 17 7 6 20 20 C 1.36334 * 127.14435 * 7.38269 * 19 17 7 21 21 O 1.33949 * 108.56889 * 179.89013 * 20 19 17 22 22 C 1.34311 * 110.89550 * 0.38895 * 21 20 19 23 23 S 1.76200 * 125.52475 * 179.78180 * 22 21 20 24 24 C 1.81395 * 103.00150 * 359.97412 * 23 22 21 25 25 C 1.35121 * 108.94956 * 359.75981 * 22 21 20 26 26 H 1.08996 * 109.46749 * 66.37145 * 1 2 3 27 27 H 1.09009 * 109.46737 * 186.36841 * 1 2 3 28 28 H 1.08998 * 109.47395 * 306.36854 * 1 2 3 29 29 H 1.08993 * 109.47589 * 240.00218 * 2 1 3 30 30 H 1.09000 * 109.47063 * 119.99619 * 2 1 3 31 31 H 1.09004 * 109.47427 * 185.18932 * 3 2 1 32 32 H 1.09008 * 109.47134 * 55.36481 * 4 3 2 33 33 H 1.09003 * 109.47375 * 175.36631 * 4 3 2 34 34 H 1.08995 * 109.47054 * 65.33717 * 5 4 3 35 35 H 1.08996 * 109.47102 * 185.33685 * 5 4 3 36 36 H 1.08994 * 109.46537 * 305.33472 * 5 4 3 37 37 H 1.09003 * 109.47085 * 305.00191 * 6 3 2 38 38 H 1.08997 * 109.47403 * 184.99957 * 6 3 2 39 39 H 1.08999 * 109.46744 * 211.23885 * 8 7 6 40 40 H 1.09003 * 109.46835 * 331.23445 * 8 7 6 41 41 H 0.97006 * 120.00376 * 180.02562 * 12 11 9 42 42 H 1.08007 * 125.71314 * 0.03169 * 20 19 17 43 43 H 1.09003 * 109.47034 * 59.99898 * 24 23 22 44 44 H 1.09002 * 109.46990 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.47116 * 299.99817 * 24 23 22 46 46 H 1.07998 * 127.06452 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4261 2.2005 -1.1787 5 6 1.9196 1.5884 -2.4913 6 6 1.6393 2.1251 1.3094 7 7 2.3224 1.4726 2.4292 8 6 3.6358 1.9526 2.8661 9 6 3.4581 2.9915 3.9432 10 1 2.4661 3.2669 4.2694 11 6 4.5620 3.5903 4.5123 12 7 5.7700 3.2552 4.1147 13 14 4.3417 4.8775 5.8479 14 1 2.8937 5.0740 6.1122 15 1 5.0148 4.4217 7.0906 16 1 4.9416 6.1609 5.4023 17 6 1.7426 0.4307 3.0574 18 8 0.7064 -0.0386 2.6272 19 6 2.3643 -0.1402 4.2656 20 6 3.4364 0.3506 4.9500 21 8 3.6860 -0.4578 5.9885 22 6 2.8181 -1.4824 6.0173 23 16 2.7996 -2.7751 7.2145 24 6 4.1859 -2.3440 8.3020 25 6 1.9611 -1.3609 4.9797 26 1 -0.3633 0.4119 -0.9415 27 1 -0.3633 -1.0214 0.1140 28 1 -0.3634 0.6094 0.8275 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1260 1.4441 -0.0930 32 1 0.3394 2.1290 -1.1305 33 1 1.7237 3.2480 -1.1318 34 1 1.5419 0.5700 -2.5819 35 1 1.5591 2.1855 -3.3288 36 1 3.0095 1.5738 -2.4981 37 1 0.5608 2.0454 1.4456 38 1 1.9242 3.1766 1.2731 39 1 4.2156 1.1174 3.2589 40 1 4.1616 2.3935 2.0192 41 1 6.5467 3.6762 4.5153 42 1 3.9902 1.2431 4.6984 43 1 4.0105 -1.3625 8.7425 44 1 4.2708 -3.0876 9.0945 45 1 5.1090 -2.3226 7.7229 46 1 1.1474 -2.0243 4.7264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601039732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:24 Heat of formation + Delta-G solvation = -32.490373 kcal Electronic energy + Delta-G solvation = -26688.243016 eV Core-core repulsion = 23091.755176 eV Total energy + Delta-G solvation = -3596.487840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.43221 -40.89832 -38.06487 -36.78253 -34.54880 -33.77716 -31.92546 -31.26299 -29.97874 -29.53387 -28.79144 -25.78498 -25.18429 -24.35156 -23.09350 -22.70904 -20.83989 -19.85959 -18.98033 -18.56721 -17.78114 -17.25287 -16.95228 -16.74931 -16.65447 -16.36273 -15.97053 -15.39791 -14.94902 -14.53147 -14.48560 -14.35923 -14.33226 -14.14523 -14.03821 -13.83489 -13.46047 -13.14871 -12.97504 -12.83664 -12.76490 -12.73469 -12.40352 -12.30015 -12.12671 -12.00548 -11.75932 -11.69100 -11.37788 -11.23316 -11.20325 -11.08191 -10.82541 -10.67947 -10.36894 -9.39952 -8.39562 -8.30798 -6.47462 0.15527 0.47551 0.88613 0.99415 1.37418 1.43089 1.52274 2.18862 2.33551 2.48590 2.70354 2.99145 3.70578 3.93085 3.96003 4.06053 4.16394 4.19546 4.21612 4.27633 4.45213 4.48831 4.54393 4.62843 4.71964 4.73873 4.78665 4.83103 4.88838 4.95399 5.02458 5.09128 5.11648 5.13482 5.16431 5.30778 5.35588 5.38089 5.46787 5.57667 5.60640 5.70661 5.84199 5.90091 5.90917 6.50032 6.74960 7.21192 7.40743 8.71315 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.005105 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.618163 B = 5483.625720 C = 7981.840639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 C -0.095 4.095 4 C -0.114 4.114 5 C -0.146 4.146 6 C 0.123 3.877 7 N -0.590 5.590 8 C 0.231 3.769 9 C -0.552 4.552 10 H 0.056 0.944 11 C 0.034 3.966 12 N -0.904 5.904 13 Si 0.948 3.052 14 H -0.273 1.273 15 H -0.274 1.274 16 H -0.274 1.274 17 C 0.581 3.419 18 O -0.568 6.568 19 C -0.257 4.257 20 C 0.025 3.975 21 O -0.184 6.184 22 C -0.057 4.057 23 S -0.023 6.023 24 C -0.147 4.147 25 C -0.145 4.145 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.030 0.970 41 H 0.275 0.725 42 H 0.262 0.738 43 H 0.086 0.914 44 H 0.143 0.857 45 H 0.087 0.913 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 -6.618 -0.596 7.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.143 4.143 3 C -0.115 4.115 4 C -0.152 4.152 5 C -0.203 4.203 6 C 0.001 3.999 7 N -0.320 5.320 8 C 0.111 3.889 9 C -0.590 4.590 10 H 0.075 0.925 11 C -0.169 4.169 12 N -0.541 5.541 13 Si 0.773 3.227 14 H -0.198 1.198 15 H -0.200 1.200 16 H -0.200 1.200 17 C 0.372 3.628 18 O -0.450 6.450 19 C -0.262 4.262 20 C -0.046 4.046 21 O -0.081 6.081 22 C -0.215 4.215 23 S 0.213 5.787 24 C -0.315 4.315 25 C -0.173 4.173 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.277 0.723 43 H 0.105 0.895 44 H 0.161 0.839 45 H 0.106 0.894 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.796 -7.734 -0.405 8.625 hybrid contribution 0.945 1.906 0.492 2.184 sum -2.851 -5.828 0.087 6.488 Atomic orbital electron populations 1.21649 0.95221 1.00753 1.01003 1.21401 0.96969 0.95774 1.00145 1.21522 0.99663 0.95827 0.94445 1.21522 1.01003 0.99113 0.93534 1.21741 1.00903 1.01083 0.96585 1.21601 0.97226 0.96150 0.84952 1.47926 1.20784 1.30963 1.32296 1.19619 0.79648 0.94364 0.95316 1.21640 0.93260 1.22967 1.21116 0.92544 1.25584 0.94641 0.97988 0.98707 1.69993 0.98425 1.43040 1.42675 0.85639 0.78401 0.79380 0.79282 1.19770 1.19964 1.19960 1.17300 0.83788 0.79745 0.82005 1.90656 1.24916 1.62203 1.67271 1.21562 1.02118 1.00648 1.01889 1.27751 0.97529 0.95069 0.84298 1.84049 1.48734 1.30924 1.44394 1.24513 0.96624 0.95898 1.04482 1.85374 1.43480 1.24956 1.24882 1.23746 0.98349 1.07487 1.01910 1.22489 1.01854 0.97935 0.95013 0.91870 0.94501 0.93078 0.92071 0.94743 0.92543 0.90923 0.91702 0.92570 0.91474 0.93270 0.90849 0.90631 0.94659 0.95145 0.91588 0.72303 0.89523 0.83867 0.89377 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 8.05 71.98 0.58 -3.39 16 2 C -0.11 -3.42 4.79 30.59 0.15 -3.27 16 3 C -0.10 -2.98 2.37 -10.79 -0.03 -3.01 16 4 C -0.11 -2.80 5.07 30.59 0.15 -2.64 16 5 C -0.15 -3.08 9.53 71.98 0.69 -2.39 16 6 C 0.12 4.49 4.89 86.38 0.42 4.92 16 7 N -0.59 -25.12 2.34 -830.07 -1.95 -27.07 16 8 C 0.23 10.70 4.65 85.63 0.40 11.10 16 9 C -0.55 -26.94 7.13 25.60 0.18 -26.76 16 10 H 0.06 2.88 7.81 -2.91 -0.02 2.85 16 11 C 0.03 1.65 4.92 84.65 0.42 2.07 16 12 N -0.90 -45.68 13.29 21.45 0.28 -45.39 16 13 Si 0.95 39.43 29.54 68.60 2.03 41.45 16 14 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 15 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 C 0.58 25.87 6.41 86.65 0.56 26.43 16 18 O -0.57 -25.68 12.28 -4.09 -0.05 -25.73 16 19 C -0.26 -11.22 6.12 -19.00 -0.12 -11.34 16 20 C 0.03 1.11 9.55 67.38 0.64 1.75 16 21 O -0.18 -7.33 10.19 0.81 0.01 -7.33 16 22 C -0.06 -2.05 7.32 67.10 0.49 -1.56 16 23 S -0.02 -0.59 22.74 -56.49 -1.28 -1.87 16 24 C -0.15 -2.81 10.45 113.37 1.18 -1.62 16 25 C -0.14 -5.63 10.98 23.87 0.26 -5.36 16 26 H 0.06 1.59 6.63 -2.39 -0.02 1.58 16 27 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.05 1.78 4.84 -2.39 -0.01 1.77 16 29 H 0.06 1.77 6.94 -2.39 -0.02 1.75 16 30 H 0.03 1.35 5.47 -2.39 -0.01 1.33 16 31 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.07 1.70 6.22 -2.38 -0.01 1.68 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.17 6.95 -2.39 -0.02 1.15 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 2.71 5.74 -2.39 -0.01 2.70 16 38 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 39 H 0.04 1.73 4.94 -2.39 -0.01 1.72 16 40 H 0.03 1.47 8.06 -2.39 -0.02 1.45 16 41 H 0.27 13.12 8.31 -92.70 -0.77 12.35 16 42 H 0.26 12.33 2.82 -2.91 -0.01 12.32 16 43 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.16 5.87 8.06 -2.91 -0.02 5.85 16 Total: -1.00 -55.62 369.93 6.01 -49.61 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.99 Total: 31.40 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 5.98 Total: -15.09 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -1.66 Total: -72.46 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.04 Total: -33.05 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -1.28 Total: -1.87 kcal Total: -55.62 6.01 -49.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601039732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.125 kcal (2) G-P(sol) polarization free energy of solvation -55.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds