Wall clock time and date at job start Tue Mar 31 2020 15:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47423 * 2 1 4 4 C 1.53001 * 109.47236 * 120.00275 * 2 1 3 5 5 N 1.46492 * 109.47189 * 176.59732 * 4 2 1 6 6 C 1.46509 * 119.99967 * 276.19000 * 5 4 2 7 7 C 1.52996 * 109.47216 * 301.38504 * 6 5 4 8 8 C 1.52997 * 109.46605 * 61.38209 * 6 5 4 9 9 S 1.65599 * 120.00263 * 96.19555 * 5 4 2 10 10 O 1.42096 * 106.40039 * 347.75881 * 9 5 4 11 11 O 1.42103 * 106.40011 * 214.84322 * 9 5 4 12 12 C 1.76197 * 107.22221 * 101.30293 * 9 5 4 13 13 C 1.37634 * 120.13279 * 115.54391 * 12 9 5 14 14 C 1.38606 * 120.25173 * 180.32378 * 13 12 9 15 15 C 1.38655 * 120.50094 * 359.66974 * 14 13 12 16 16 C 1.37600 * 120.25033 * 0.02562 * 15 14 13 17 17 C 1.40696 * 120.12431 * 295.23957 * 12 9 5 18 18 C 1.41395 * 120.24849 * 359.97438 * 17 12 9 19 19 H 1.07998 * 119.99669 * 321.19781 * 18 17 12 20 20 C 1.39948 * 120.00307 * 141.18457 * 18 17 12 21 21 N 1.30827 * 120.00042 * 152.49909 * 20 18 17 22 22 Si 1.86804 * 119.99816 * 332.50437 * 20 18 17 23 23 H 1.48494 * 109.47050 * 267.75427 * 22 20 18 24 24 H 1.48492 * 109.47079 * 27.75737 * 22 20 18 25 25 H 1.48503 * 109.46667 * 147.75572 * 22 20 18 26 26 H 1.09005 * 109.46473 * 300.00045 * 1 2 3 27 27 H 1.08996 * 109.46860 * 59.99399 * 1 2 3 28 28 H 1.08993 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46995 * 239.99900 * 2 1 3 30 30 H 1.09006 * 109.47117 * 59.99974 * 3 2 1 31 31 H 1.08996 * 109.47424 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46873 * 300.00178 * 3 2 1 33 33 H 1.09000 * 109.47120 * 56.59403 * 4 2 1 34 34 H 1.09002 * 109.46712 * 296.59943 * 4 2 1 35 35 H 1.08996 * 109.47219 * 181.38462 * 6 5 4 36 36 H 1.09007 * 109.47381 * 59.99578 * 7 6 5 37 37 H 1.08993 * 109.47401 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.47313 * 299.99962 * 7 6 5 39 39 H 1.09001 * 109.47297 * 51.73215 * 8 6 5 40 40 H 1.09002 * 109.46823 * 171.72415 * 8 6 5 41 41 H 1.08994 * 109.47843 * 291.72342 * 8 6 5 42 42 H 1.08007 * 119.87355 * 0.02562 * 13 12 9 43 43 H 1.07997 * 119.75507 * 179.69451 * 14 13 12 44 44 H 1.08002 * 119.87722 * 180.02562 * 15 14 13 45 45 H 1.07993 * 120.13367 * 180.02562 * 16 15 14 46 46 H 0.96990 * 119.99904 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5027 -0.7927 1.2089 6 6 4.1634 -1.8653 0.4609 7 6 3.7162 -3.2211 1.0110 8 6 3.7836 -1.7645 -1.0177 9 16 4.4093 0.3388 2.0089 10 8 3.5158 1.3795 2.3800 11 8 5.5695 0.5559 1.2175 12 6 4.9619 -0.4013 3.5094 13 6 6.3054 -0.6114 3.7223 14 6 6.7423 -1.1995 4.8989 15 6 5.8343 -1.5765 5.8767 16 6 4.4870 -1.3704 5.6880 17 6 4.0320 -0.7740 4.4972 18 6 2.6499 -0.5567 4.2926 19 1 2.3115 0.3456 3.8050 20 6 1.7204 -1.5110 4.7215 21 7 0.5059 -1.1440 5.0405 22 14 2.2141 -3.3088 4.8386 23 1 1.8870 -3.9960 3.5635 24 1 3.6738 -3.4057 5.0930 25 1 1.4736 -3.9537 5.9527 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6277 -1.7298 1.2802 34 1 1.7273 -0.1735 2.1381 35 1 5.2440 -1.7691 0.5659 36 1 2.6355 -3.3173 0.9061 37 1 4.2074 -4.0190 0.4543 38 1 3.9867 -3.2929 2.0646 39 1 3.9674 -0.7501 -1.3718 40 1 4.3854 -2.4657 -1.5960 41 1 2.7277 -2.0060 -1.1390 42 1 7.0215 -0.3212 2.9677 43 1 7.7979 -1.3651 5.0555 44 1 6.1859 -2.0336 6.7899 45 1 3.7815 -1.6643 6.4510 46 1 -0.1382 -1.8053 5.3381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601303465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:32 Heat of formation + Delta-G solvation = -67.505615 kcal Electronic energy + Delta-G solvation = -28585.636434 eV Core-core repulsion = 24987.630219 eV Total energy + Delta-G solvation = -3598.006215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -37.98315 -37.77166 -36.41283 -34.92412 -34.25895 -33.84192 -30.79631 -30.46125 -30.04383 -27.05059 -26.64086 -25.67681 -25.19734 -21.95489 -21.15385 -20.67513 -19.66436 -18.20481 -17.70956 -17.25848 -16.29938 -15.49008 -15.32948 -14.57156 -14.33403 -14.26342 -13.85095 -13.78852 -13.51579 -13.27992 -13.01984 -12.96262 -12.75936 -12.23699 -12.06521 -12.01757 -11.87932 -11.72033 -11.61680 -11.36707 -11.26128 -11.13544 -11.06548 -11.02718 -10.89023 -10.79077 -10.61926 -10.52980 -10.41852 -10.10751 -10.03868 -9.82286 -9.35064 -9.31032 -8.39383 -8.15420 -7.68396 -7.21143 -4.82010 1.48270 2.11099 2.52139 2.93452 3.02153 3.10778 3.80474 3.81993 4.22931 4.70002 4.99575 5.11939 5.24280 5.33885 5.43125 5.43931 5.50687 5.53602 5.78028 5.85623 5.86366 5.94519 5.97167 6.01712 6.06369 6.09937 6.19386 6.20505 6.27287 6.30833 6.40061 6.42558 6.48929 6.52220 6.59255 6.66550 6.75915 6.80570 6.95205 6.99496 7.11967 7.23648 7.40390 7.48832 7.61023 7.85629 8.20051 8.36318 8.56419 9.76786 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.008045 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.870712 B = 3479.558602 C = 4328.279805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C -0.144 4.144 4 C 0.125 3.875 5 N -0.983 5.983 6 C 0.149 3.851 7 C -0.164 4.164 8 C -0.159 4.159 9 S 2.703 3.297 10 O -0.963 6.963 11 O -0.998 6.998 12 C -0.768 4.768 13 C 0.005 3.995 14 C -0.251 4.251 15 C -0.058 4.058 16 C -0.201 4.201 17 C 0.168 3.832 18 C -0.480 4.480 19 H 0.132 0.868 20 C 0.104 3.896 21 N -0.772 5.772 22 Si 0.862 3.138 23 H -0.261 1.261 24 H -0.223 1.223 25 H -0.276 1.276 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 -4.542 -7.396 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.201 4.201 4 C -0.001 4.001 5 N -0.817 5.817 6 C 0.042 3.958 7 C -0.223 4.223 8 C -0.217 4.217 9 S 2.801 3.199 10 O -0.953 6.953 11 O -0.989 6.989 12 C -0.862 4.862 13 C -0.014 4.014 14 C -0.271 4.271 15 C -0.077 4.077 16 C -0.221 4.221 17 C 0.163 3.837 18 C -0.507 4.507 19 H 0.149 0.851 20 C -0.120 4.120 21 N -0.393 5.393 22 Si 0.684 3.316 23 H -0.186 1.186 24 H -0.145 1.145 25 H -0.202 1.202 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.129 0.871 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.497 -3.692 -7.633 8.494 hybrid contribution 0.136 -1.507 0.855 1.738 sum 0.633 -5.200 -6.778 8.566 Atomic orbital electron populations 1.21746 0.95174 1.01360 1.01787 1.21819 0.95592 0.97158 0.99850 1.21886 0.99952 0.96153 1.02123 1.21564 0.78322 1.01247 0.98926 1.57462 1.15394 1.44321 1.64555 1.20655 0.96902 0.87098 0.91113 1.22204 1.01951 0.96196 1.01926 1.22286 1.01698 1.02085 0.95661 1.01157 0.72082 0.73335 0.73355 1.93507 1.64596 1.53290 1.83923 1.93444 1.50482 1.85140 1.69802 1.30160 1.01507 1.33616 1.20891 1.20381 0.93443 0.91753 0.95868 1.20515 0.97765 1.11626 0.97160 1.20859 0.93842 0.95988 0.97008 1.21293 0.94531 1.08183 0.98091 1.17043 0.92228 0.85790 0.88641 1.20167 0.88904 1.07074 1.34514 0.85116 1.26051 0.94325 1.01662 0.89973 1.69794 1.05553 1.37485 1.26455 0.86931 0.83321 0.81911 0.79443 1.18557 1.14545 1.20176 0.92109 0.93122 0.93037 0.90589 0.90698 0.94389 0.93532 0.91370 0.87017 0.89357 0.92109 0.92254 0.91833 0.92056 0.92341 0.91902 0.87125 0.88264 0.88440 0.88004 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 37.16 0.34 -1.59 16 2 C -0.12 -1.89 2.84 -90.62 -0.26 -2.15 16 3 C -0.14 -2.38 7.78 37.16 0.29 -2.09 16 4 C 0.12 2.20 4.02 -4.05 -0.02 2.19 16 5 N -0.98 -17.99 2.34 -107.31 -0.25 -18.24 16 6 C 0.15 2.33 3.20 -67.93 -0.22 2.12 16 7 C -0.16 -2.42 9.12 37.16 0.34 -2.08 16 8 C -0.16 -2.05 7.81 37.16 0.29 -1.76 16 9 S 2.70 58.59 3.77 -107.50 -0.41 58.18 16 10 O -0.96 -22.78 12.18 -57.17 -0.70 -23.47 16 11 O -1.00 -22.45 15.96 -57.17 -0.91 -23.36 16 12 C -0.77 -17.62 5.96 -38.87 -0.23 -17.85 16 13 C 0.01 0.12 9.53 -39.67 -0.38 -0.26 16 14 C -0.25 -5.10 10.05 -39.29 -0.39 -5.50 16 15 C -0.06 -1.20 10.02 -39.66 -0.40 -1.60 16 16 C -0.20 -4.57 6.78 -38.87 -0.26 -4.83 16 17 C 0.17 4.00 4.77 -106.82 -0.51 3.49 16 18 C -0.48 -11.67 6.65 -37.74 -0.25 -11.92 16 19 H 0.13 3.43 4.74 -52.49 -0.25 3.18 16 20 C 0.10 2.41 5.20 -17.34 -0.09 2.32 16 21 N -0.77 -18.19 13.93 55.55 0.77 -17.42 16 22 Si 0.86 17.58 26.57 -169.99 -4.52 13.07 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.22 -4.65 5.44 56.52 0.31 -4.35 16 25 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.04 4.78 -51.93 -0.25 0.79 16 30 H 0.07 1.36 7.49 -51.93 -0.39 0.97 16 31 H 0.04 0.67 6.23 -51.93 -0.32 0.35 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.13 6.40 -51.93 -0.33 0.80 16 34 H 0.11 2.30 4.65 -51.93 -0.24 2.06 16 35 H 0.09 1.42 7.27 -51.93 -0.38 1.04 16 36 H 0.06 0.87 6.67 -51.92 -0.35 0.53 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 42 H 0.11 2.21 7.33 -52.48 -0.38 1.83 16 43 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 44 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 45 H 0.10 2.23 6.64 -52.49 -0.35 1.89 16 46 H 0.29 6.15 8.30 -40.82 -0.34 5.82 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -27.25 355.29 -9.42 -36.67 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.02 Total: 10.75 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: -1.75 Total: -41.52 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.52 Total: -35.66 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -1.61 Total: -46.83 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -4.52 Total: 13.07 kcal Atomic # 16 Polarization: 58.59 SS G_CDS: -0.41 Total: 58.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.25 -9.42 -36.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.838 kcal (2) G-P(sol) polarization free energy of solvation -27.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds