Wall clock time and date at job start Tue Mar 31 2020 15:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47423 * 2 1 4 4 C 1.53001 * 109.47236 * 120.00275 * 2 1 3 5 5 N 1.46492 * 109.47189 * 176.59732 * 4 2 1 6 6 C 1.46509 * 119.99967 * 276.19000 * 5 4 2 7 7 C 1.52996 * 109.47216 * 301.38504 * 6 5 4 8 8 C 1.52997 * 109.46605 * 61.38209 * 6 5 4 9 9 S 1.65599 * 120.00263 * 96.19555 * 5 4 2 10 10 O 1.42096 * 106.40039 * 347.75881 * 9 5 4 11 11 O 1.42103 * 106.40011 * 214.84322 * 9 5 4 12 12 C 1.76197 * 107.22221 * 101.30293 * 9 5 4 13 13 C 1.37634 * 120.13279 * 115.54391 * 12 9 5 14 14 C 1.38606 * 120.25173 * 180.32378 * 13 12 9 15 15 C 1.38655 * 120.50094 * 359.66974 * 14 13 12 16 16 C 1.37600 * 120.25033 * 0.02562 * 15 14 13 17 17 C 1.40696 * 120.12431 * 295.23957 * 12 9 5 18 18 C 1.41395 * 120.24849 * 359.97438 * 17 12 9 19 19 H 1.07998 * 119.99669 * 321.19781 * 18 17 12 20 20 C 1.39948 * 120.00307 * 141.18457 * 18 17 12 21 21 N 1.30827 * 120.00042 * 152.49909 * 20 18 17 22 22 Si 1.86804 * 119.99816 * 332.50437 * 20 18 17 23 23 H 1.48494 * 109.47050 * 267.75427 * 22 20 18 24 24 H 1.48492 * 109.47079 * 27.75737 * 22 20 18 25 25 H 1.48503 * 109.46667 * 147.75572 * 22 20 18 26 26 H 1.09005 * 109.46473 * 300.00045 * 1 2 3 27 27 H 1.08996 * 109.46860 * 59.99399 * 1 2 3 28 28 H 1.08993 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46995 * 239.99900 * 2 1 3 30 30 H 1.09006 * 109.47117 * 59.99974 * 3 2 1 31 31 H 1.08996 * 109.47424 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46873 * 300.00178 * 3 2 1 33 33 H 1.09000 * 109.47120 * 56.59403 * 4 2 1 34 34 H 1.09002 * 109.46712 * 296.59943 * 4 2 1 35 35 H 1.08996 * 109.47219 * 181.38462 * 6 5 4 36 36 H 1.09007 * 109.47381 * 59.99578 * 7 6 5 37 37 H 1.08993 * 109.47401 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.47313 * 299.99962 * 7 6 5 39 39 H 1.09001 * 109.47297 * 51.73215 * 8 6 5 40 40 H 1.09002 * 109.46823 * 171.72415 * 8 6 5 41 41 H 1.08994 * 109.47843 * 291.72342 * 8 6 5 42 42 H 1.08007 * 119.87355 * 0.02562 * 13 12 9 43 43 H 1.07997 * 119.75507 * 179.69451 * 14 13 12 44 44 H 1.08002 * 119.87722 * 180.02562 * 15 14 13 45 45 H 1.07993 * 120.13367 * 180.02562 * 16 15 14 46 46 H 0.96990 * 119.99904 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5027 -0.7927 1.2089 6 6 4.1634 -1.8653 0.4609 7 6 3.7162 -3.2211 1.0110 8 6 3.7836 -1.7645 -1.0177 9 16 4.4093 0.3388 2.0089 10 8 3.5158 1.3795 2.3800 11 8 5.5695 0.5559 1.2175 12 6 4.9619 -0.4013 3.5094 13 6 6.3054 -0.6114 3.7223 14 6 6.7423 -1.1995 4.8989 15 6 5.8343 -1.5765 5.8767 16 6 4.4870 -1.3704 5.6880 17 6 4.0320 -0.7740 4.4972 18 6 2.6499 -0.5567 4.2926 19 1 2.3115 0.3456 3.8050 20 6 1.7204 -1.5110 4.7215 21 7 0.5059 -1.1440 5.0405 22 14 2.2141 -3.3088 4.8386 23 1 1.8870 -3.9960 3.5635 24 1 3.6738 -3.4057 5.0930 25 1 1.4736 -3.9537 5.9527 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6277 -1.7298 1.2802 34 1 1.7273 -0.1735 2.1381 35 1 5.2440 -1.7691 0.5659 36 1 2.6355 -3.3173 0.9061 37 1 4.2074 -4.0190 0.4543 38 1 3.9867 -3.2929 2.0646 39 1 3.9674 -0.7501 -1.3718 40 1 4.3854 -2.4657 -1.5960 41 1 2.7277 -2.0060 -1.1390 42 1 7.0215 -0.3212 2.9677 43 1 7.7979 -1.3651 5.0555 44 1 6.1859 -2.0336 6.7899 45 1 3.7815 -1.6643 6.4510 46 1 -0.1382 -1.8053 5.3381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601303465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:31 Heat of formation + Delta-G solvation = -82.565191 kcal Electronic energy + Delta-G solvation = -28586.289467 eV Core-core repulsion = 24987.630219 eV Total energy + Delta-G solvation = -3598.659248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.56140 -39.22099 -38.14526 -36.66994 -35.58763 -35.54176 -32.46166 -31.82441 -31.73577 -28.19873 -27.84255 -27.28363 -26.67124 -23.64039 -22.87443 -21.95589 -20.99703 -19.76528 -19.39822 -18.87147 -17.97149 -17.15696 -16.87017 -16.13402 -15.90686 -15.59506 -15.29234 -15.18935 -15.06906 -14.84995 -14.67610 -14.17638 -14.05328 -13.87683 -13.68693 -13.28509 -13.25832 -13.10229 -12.95877 -12.94926 -12.73811 -12.71563 -12.63487 -12.49524 -12.39862 -12.24492 -12.03376 -11.94080 -11.76206 -11.71983 -11.42620 -11.18245 -11.06923 -10.95964 -9.94372 -9.69586 -9.42001 -8.95579 -6.62184 -0.17183 0.39217 0.80526 1.30015 1.37805 1.46669 2.14854 2.26599 2.50838 3.00150 3.31726 3.70747 3.83310 4.07544 4.10891 4.20393 4.22475 4.30860 4.34220 4.35617 4.52186 4.64106 4.76059 4.78169 4.83398 4.86213 4.87339 4.90011 4.97933 4.98530 5.07599 5.14595 5.15333 5.22059 5.25981 5.29943 5.42364 5.43192 5.49557 5.52966 5.58596 5.66798 5.78447 5.88330 6.01390 6.14079 6.38092 6.60981 6.76909 8.07914 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.008045 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.870712 B = 3479.558602 C = 4328.279805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C -0.144 4.144 4 C 0.125 3.875 5 N -0.976 5.976 6 C 0.137 3.863 7 C -0.162 4.162 8 C -0.154 4.154 9 S 2.709 3.291 10 O -0.992 6.992 11 O -1.011 7.011 12 C -0.784 4.784 13 C -0.012 4.012 14 C -0.243 4.243 15 C -0.056 4.056 16 C -0.224 4.224 17 C 0.153 3.847 18 C -0.498 4.498 19 H 0.100 0.900 20 C 0.083 3.917 21 N -0.805 5.805 22 Si 0.905 3.095 23 H -0.245 1.245 24 H -0.229 1.229 25 H -0.269 1.269 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.019 0.981 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.038 0.962 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.103 0.897 46 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 -6.888 -8.642 11.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C -0.202 4.202 4 C 0.000 4.000 5 N -0.813 5.813 6 C 0.032 3.968 7 C -0.220 4.220 8 C -0.213 4.213 9 S 2.807 3.193 10 O -0.983 6.983 11 O -1.001 7.001 12 C -0.877 4.877 13 C -0.031 4.031 14 C -0.262 4.262 15 C -0.074 4.074 16 C -0.244 4.244 17 C 0.148 3.852 18 C -0.525 4.525 19 H 0.118 0.882 20 C -0.139 4.139 21 N -0.428 5.428 22 Si 0.725 3.275 23 H -0.169 1.169 24 H -0.152 1.152 25 H -0.194 1.194 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.141 0.859 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.121 0.879 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.400 -6.031 -8.875 10.821 hybrid contribution -0.019 -0.728 1.244 1.442 sum 1.381 -6.759 -7.631 10.287 Atomic orbital electron populations 1.21727 0.93696 1.02349 1.01933 1.21826 0.96758 0.95948 0.99375 1.21884 0.98770 0.97416 1.02106 1.21546 0.77908 1.01593 0.98909 1.57242 1.15386 1.44560 1.64158 1.20985 0.96454 0.86645 0.92718 1.22199 1.02518 0.96493 1.00811 1.22258 1.03070 1.02458 0.93497 1.00784 0.71797 0.73562 0.73186 1.93471 1.65182 1.55221 1.84392 1.93411 1.51186 1.85656 1.69893 1.30436 1.02316 1.33423 1.21516 1.20698 0.93151 0.92247 0.97054 1.20977 0.99632 1.09576 0.96056 1.21279 0.92905 0.94861 0.98335 1.21442 0.95864 1.09216 0.97834 1.17204 0.92162 0.86430 0.89374 1.19974 0.89707 1.06930 1.35919 0.88226 1.26532 0.93968 1.04112 0.89247 1.69803 1.06470 1.38852 1.27669 0.86281 0.82560 0.78404 0.80262 1.16943 1.15212 1.19422 0.94129 0.90821 0.91628 0.88174 0.93422 0.96181 0.90793 0.90294 0.90464 0.90043 0.91702 0.89103 0.94250 0.92900 0.89577 0.90601 0.85939 0.84711 0.84791 0.87938 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.19 71.98 0.66 -2.94 16 2 C -0.12 -3.54 2.84 -10.79 -0.03 -3.57 16 3 C -0.14 -4.85 7.78 71.98 0.56 -4.29 16 4 C 0.13 4.49 4.02 86.38 0.35 4.84 16 5 N -0.98 -35.94 2.34 -493.41 -1.16 -37.10 16 6 C 0.14 4.11 3.20 44.99 0.14 4.26 16 7 C -0.16 -4.41 9.12 71.98 0.66 -3.76 16 8 C -0.15 -3.55 7.81 71.98 0.56 -2.99 16 9 S 2.71 121.10 3.77 -56.49 -0.21 120.89 16 10 O -0.99 -49.88 12.18 -128.00 -1.56 -51.44 16 11 O -1.01 -46.17 15.96 -128.00 -2.04 -48.21 16 12 C -0.78 -36.51 5.96 22.73 0.14 -36.37 16 13 C -0.01 -0.50 9.53 22.21 0.21 -0.29 16 14 C -0.24 -9.26 10.05 22.46 0.23 -9.04 16 15 C -0.06 -2.16 10.02 22.22 0.22 -1.94 16 16 C -0.22 -10.06 6.78 22.73 0.15 -9.91 16 17 C 0.15 7.43 4.77 -21.29 -0.10 7.33 16 18 C -0.50 -25.28 6.65 23.46 0.16 -25.12 16 19 H 0.10 5.63 4.74 -2.91 -0.01 5.62 16 20 C 0.08 3.92 5.20 85.26 0.44 4.37 16 21 N -0.81 -39.16 13.93 21.83 0.30 -38.85 16 22 Si 0.91 35.90 26.57 68.60 1.82 37.73 16 23 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 24 H -0.23 -9.27 5.44 99.48 0.54 -8.73 16 25 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 26 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 2.50 4.78 -2.38 -0.01 2.49 16 30 H 0.05 1.83 7.49 -2.38 -0.02 1.82 16 31 H 0.02 0.71 6.23 -2.39 -0.01 0.70 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.59 6.40 -2.39 -0.02 2.58 16 34 H 0.08 3.38 4.65 -2.39 -0.01 3.37 16 35 H 0.08 2.53 7.27 -2.39 -0.02 2.52 16 36 H 0.06 1.70 6.67 -2.38 -0.02 1.68 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.26 8.10 -2.38 -0.02 1.24 16 39 H 0.05 1.32 7.95 -2.39 -0.02 1.30 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.55 6.43 -2.39 -0.02 1.53 16 42 H 0.12 4.80 7.33 -2.91 -0.02 4.77 16 43 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 45 H 0.10 4.49 6.64 -2.91 -0.02 4.47 16 46 H 0.30 12.94 8.30 -92.72 -0.77 12.17 16 Total: -1.00 -61.19 355.29 2.32 -58.87 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: 0.81 Total: 37.53 kcal Atomic # 6 Polarization: -83.76 SS G_CDS: 4.35 Total: -79.41 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -0.85 Total: -75.95 kcal Atomic # 8 Polarization: -96.05 SS G_CDS: -3.60 Total: -99.65 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 1.82 Total: 37.73 kcal Atomic # 16 Polarization: 121.10 SS G_CDS: -0.21 Total: 120.89 kcal Total: -61.19 2.32 -58.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.695 kcal (2) G-P(sol) polarization free energy of solvation -61.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds