Wall clock time and date at job start Tue Mar 31 2020 14:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 C 1.52998 * 109.47508 * 240.00452 * 2 1 3 5 5 C 1.52999 * 109.47405 * 120.00201 * 2 1 3 6 6 C 1.52994 * 109.47098 * 60.00352 * 5 2 1 7 7 C 1.53004 * 109.47015 * 180.02562 * 6 5 2 8 8 N 1.46503 * 109.46824 * 179.97438 * 7 6 5 9 9 S 1.65600 * 119.99607 * 165.97818 * 8 7 6 10 10 O 1.42107 * 106.39920 * 176.35413 * 9 8 7 11 11 O 1.42092 * 106.40678 * 309.27934 * 9 8 7 12 12 C 1.76205 * 107.21516 * 62.81780 * 9 8 7 13 13 C 1.37633 * 120.12704 * 245.80780 * 12 9 8 14 14 C 1.38617 * 120.24913 * 179.97438 * 13 12 9 15 15 C 1.38663 * 120.49918 * 0.02562 * 14 13 12 16 16 C 1.37596 * 120.24644 * 0.02934 * 15 14 13 17 17 C 1.40702 * 120.12606 * 65.53414 * 12 9 8 18 18 C 1.41393 * 120.24390 * 359.97438 * 17 12 9 19 19 H 1.07997 * 120.00276 * 331.43773 * 18 17 12 20 20 C 1.39949 * 119.99928 * 151.43605 * 18 17 12 21 21 N 1.30824 * 119.99912 * 348.41258 * 20 18 17 22 22 Si 1.86792 * 120.00096 * 168.41112 * 20 18 17 23 23 H 1.48502 * 109.47162 * 90.00060 * 22 20 18 24 24 H 1.48505 * 109.47213 * 209.99882 * 22 20 18 25 25 H 1.48503 * 109.47607 * 330.00106 * 22 20 18 26 26 H 1.08992 * 109.47245 * 299.99847 * 1 2 3 27 27 H 1.08998 * 109.47105 * 60.00271 * 1 2 3 28 28 H 1.09008 * 109.46729 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47290 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47108 * 300.00556 * 3 2 1 31 31 H 1.09001 * 109.46850 * 60.00037 * 3 2 1 32 32 H 1.09005 * 109.46989 * 300.00216 * 4 2 1 33 33 H 1.09007 * 109.47289 * 59.99406 * 4 2 1 34 34 H 1.08996 * 109.47537 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46983 * 300.00302 * 5 2 1 36 36 H 1.08996 * 109.46867 * 180.02562 * 5 2 1 37 37 H 1.09001 * 109.47245 * 60.00110 * 6 5 2 38 38 H 1.09003 * 109.46912 * 299.99974 * 6 5 2 39 39 H 1.09001 * 109.47295 * 59.99809 * 7 6 5 40 40 H 1.08996 * 109.46637 * 299.99751 * 7 6 5 41 41 H 0.96994 * 120.00233 * 345.70843 * 8 7 6 42 42 H 1.07999 * 119.87786 * 359.97438 * 13 12 9 43 43 H 1.07995 * 119.75014 * 179.97438 * 14 13 12 44 44 H 1.08001 * 119.86885 * 180.02562 * 15 14 13 45 45 H 1.07998 * 120.12305 * 179.97438 * 16 15 14 46 46 H 0.97002 * 119.99919 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5302 -2.1638 1.2491 7 6 2.0397 -2.8849 2.4987 8 7 1.5510 -4.2659 2.4989 9 16 2.2141 -5.3787 3.5305 10 8 1.4774 -6.5807 3.3516 11 8 3.6221 -5.2971 3.3577 12 6 1.8817 -4.8310 5.1720 13 6 2.9161 -4.4488 5.9955 14 6 2.6575 -4.0171 7.2870 15 6 1.3567 -3.9655 7.7646 16 6 0.3072 -4.3438 6.9593 17 6 0.5573 -4.7773 5.6439 18 6 -0.5139 -5.1615 4.8048 19 1 -0.4263 -5.0540 3.7338 20 6 -1.6877 -5.6812 5.3622 21 7 -1.7165 -6.0239 6.6244 22 14 -3.2133 -5.8855 4.3039 23 1 -3.2071 -7.2337 3.6814 24 1 -4.4255 -5.7359 5.1486 25 1 -3.2204 -4.8493 3.2401 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7488 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7207 -1.2495 35 1 1.6767 -0.2075 2.1392 36 1 3.1300 -0.7208 1.2493 37 1 1.8935 -2.6775 0.3591 38 1 0.4401 -2.1638 1.2491 39 1 1.6760 -2.3710 3.3885 40 1 3.1297 -2.8848 2.4990 41 1 0.8363 -4.5276 1.8975 42 1 3.9332 -4.4854 5.6341 43 1 3.4753 -3.7194 7.9265 44 1 1.1668 -3.6270 8.7725 45 1 -0.7051 -4.3032 7.3334 46 1 -2.5303 -6.3837 7.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601353799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:54 Heat of formation + Delta-G solvation = -91.904642 kcal Electronic energy + Delta-G solvation = -26271.281418 eV Core-core repulsion = 22672.217181 eV Total energy + Delta-G solvation = -3599.064237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.35349 -37.58167 -36.20172 -35.15684 -34.79794 -33.87755 -30.76835 -30.18852 -29.53914 -27.42517 -27.38397 -25.57807 -25.21689 -21.78551 -21.57850 -21.10822 -18.89724 -18.34680 -17.69713 -16.72371 -16.21550 -15.70146 -15.39175 -15.24298 -14.63332 -14.37181 -14.23019 -14.15350 -13.91881 -13.27165 -13.16867 -12.81177 -12.76084 -12.69576 -11.99686 -11.94481 -11.83698 -11.76506 -11.65281 -11.50991 -11.26174 -11.17877 -11.16716 -11.06237 -11.01186 -10.96671 -10.70639 -10.52445 -10.52262 -10.43953 -10.28660 -9.90204 -9.43584 -9.40118 -8.72401 -8.02575 -7.59523 -7.02465 -4.75487 1.57447 2.34958 2.73938 2.96283 2.99640 3.12111 3.77192 3.97583 4.41524 4.61138 4.71518 4.72234 4.76520 5.15818 5.18930 5.29011 5.38963 5.48848 5.51074 5.54745 5.65848 5.66861 5.75557 5.76069 5.83194 5.87479 5.91549 5.98829 6.05336 6.15346 6.16861 6.19924 6.24798 6.32460 6.41040 6.42763 6.54996 6.78495 6.96275 7.09575 7.31603 7.49753 7.57738 7.69466 7.81672 7.90084 8.29504 8.50680 8.65781 9.90367 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010874 B = 0.004366 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.401657 B = 6411.222665 C = 7305.643152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.109 4.109 6 C -0.129 4.129 7 C 0.123 3.877 8 N -1.123 6.123 9 S 2.700 3.300 10 O -0.966 6.966 11 O -0.999 6.999 12 C -0.775 4.775 13 C -0.003 4.003 14 C -0.251 4.251 15 C -0.077 4.077 16 C -0.158 4.158 17 C 0.186 3.814 18 C -0.445 4.445 19 H 0.087 0.913 20 C 0.080 3.920 21 N -0.777 5.777 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.256 1.256 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.410 0.590 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 10.802 -9.724 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.202 4.202 5 C -0.147 4.147 6 C -0.168 4.168 7 C -0.003 4.003 8 N -0.879 5.879 9 S 2.798 3.202 10 O -0.956 6.956 11 O -0.990 6.990 12 C -0.870 4.870 13 C -0.023 4.023 14 C -0.271 4.271 15 C -0.096 4.096 16 C -0.178 4.178 17 C 0.182 3.818 18 C -0.473 4.473 19 H 0.105 0.895 20 C -0.141 4.141 21 N -0.400 5.400 22 Si 0.738 3.262 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.180 1.180 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.243 0.757 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.143 0.857 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.600 9.979 -9.716 14.019 hybrid contribution -1.297 0.206 0.149 1.321 sum 0.304 10.185 -9.567 13.977 Atomic orbital electron populations 1.21946 0.94645 1.02184 1.01442 1.20540 0.95721 0.95231 0.95500 1.21872 1.00899 0.95548 1.01525 1.21947 1.00953 1.00589 0.96693 1.21603 1.00789 0.94946 0.97368 1.21914 1.01693 0.95328 0.97882 1.21145 0.98867 0.81629 0.98676 1.55653 1.53469 1.22666 1.56162 1.01068 0.72299 0.72826 0.74048 1.93544 1.72688 1.43079 1.86315 1.93440 1.31552 1.87128 1.86856 1.29874 1.00403 1.34109 1.22625 1.20254 0.96254 0.92318 0.93478 1.20491 0.95936 1.13870 0.96811 1.20904 0.93486 0.97592 0.97611 1.21516 0.98456 1.02594 0.95249 1.17002 0.89000 0.83658 0.92177 1.19839 0.97948 1.34365 0.95152 0.89510 1.25951 1.00455 0.92353 0.95327 1.69781 1.29367 1.27647 1.13232 0.86177 0.79103 0.80439 0.80471 1.18665 1.19814 1.17988 0.92601 0.93123 0.92077 0.92735 0.92950 0.92675 0.92128 0.93100 0.92710 0.91496 0.91657 0.91143 0.90910 0.91795 0.91129 0.75717 0.87454 0.88765 0.88844 0.85711 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.12 37.16 0.30 -1.01 16 2 C -0.07 -0.63 0.80 -154.51 -0.12 -0.75 16 3 C -0.14 -1.15 8.47 37.16 0.31 -0.84 16 4 C -0.14 -1.25 8.12 37.16 0.30 -0.95 16 5 C -0.11 -1.11 4.27 -26.73 -0.11 -1.22 16 6 C -0.13 -1.50 4.65 -26.73 -0.12 -1.63 16 7 C 0.12 1.84 6.19 -4.04 -0.02 1.81 16 8 N -1.12 -19.48 5.14 -10.61 -0.05 -19.54 16 9 S 2.70 59.46 4.96 -107.50 -0.53 58.93 16 10 O -0.97 -24.20 16.52 -57.17 -0.94 -25.14 16 11 O -1.00 -22.98 16.53 -57.17 -0.94 -23.92 16 12 C -0.77 -18.60 5.90 -38.87 -0.23 -18.83 16 13 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 14 C -0.25 -5.50 10.05 -39.28 -0.39 -5.90 16 15 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 16 C -0.16 -3.92 8.66 -38.87 -0.34 -4.25 16 17 C 0.19 4.74 5.55 -106.82 -0.59 4.15 16 18 C -0.44 -11.12 7.63 -37.74 -0.29 -11.41 16 19 H 0.09 2.02 5.82 -52.49 -0.31 1.71 16 20 C 0.08 1.92 5.24 -17.34 -0.09 1.83 16 21 N -0.78 -19.11 10.85 55.55 0.60 -18.51 16 22 Si 0.91 17.92 29.57 -169.99 -5.03 12.89 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 6.43 -51.92 -0.33 0.24 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 38 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.05 7.82 -51.93 -0.41 0.64 16 41 H 0.41 6.31 8.47 -34.47 -0.29 6.02 16 42 H 0.11 2.27 7.32 -52.49 -0.38 1.88 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 45 H 0.13 3.11 6.22 -52.49 -0.33 2.78 16 46 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 375.32 15.07 5.66 5.66 Total: -1.00 -30.08 375.32 -10.68 -40.76 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.26 Total: 10.44 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: -2.18 Total: -41.57 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.55 Total: -38.05 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -1.89 Total: -49.06 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: 59.46 SS G_CDS: -0.53 Total: 58.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.08 -10.68 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601353799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.145 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds