Wall clock time and date at job start Tue Mar 31 2020 14:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 C 1.52998 * 109.47508 * 240.00452 * 2 1 3 5 5 C 1.52999 * 109.47405 * 120.00201 * 2 1 3 6 6 C 1.52994 * 109.47098 * 60.00352 * 5 2 1 7 7 C 1.53004 * 109.47015 * 180.02562 * 6 5 2 8 8 N 1.46503 * 109.46824 * 179.97438 * 7 6 5 9 9 S 1.65600 * 119.99607 * 165.97818 * 8 7 6 10 10 O 1.42107 * 106.39920 * 176.35413 * 9 8 7 11 11 O 1.42092 * 106.40678 * 309.27934 * 9 8 7 12 12 C 1.76205 * 107.21516 * 62.81780 * 9 8 7 13 13 C 1.37633 * 120.12704 * 245.80780 * 12 9 8 14 14 C 1.38617 * 120.24913 * 179.97438 * 13 12 9 15 15 C 1.38663 * 120.49918 * 0.02562 * 14 13 12 16 16 C 1.37596 * 120.24644 * 0.02934 * 15 14 13 17 17 C 1.40702 * 120.12606 * 65.53414 * 12 9 8 18 18 C 1.41393 * 120.24390 * 359.97438 * 17 12 9 19 19 H 1.07997 * 120.00276 * 331.43773 * 18 17 12 20 20 C 1.39949 * 119.99928 * 151.43605 * 18 17 12 21 21 N 1.30824 * 119.99912 * 348.41258 * 20 18 17 22 22 Si 1.86792 * 120.00096 * 168.41112 * 20 18 17 23 23 H 1.48502 * 109.47162 * 90.00060 * 22 20 18 24 24 H 1.48505 * 109.47213 * 209.99882 * 22 20 18 25 25 H 1.48503 * 109.47607 * 330.00106 * 22 20 18 26 26 H 1.08992 * 109.47245 * 299.99847 * 1 2 3 27 27 H 1.08998 * 109.47105 * 60.00271 * 1 2 3 28 28 H 1.09008 * 109.46729 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47290 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47108 * 300.00556 * 3 2 1 31 31 H 1.09001 * 109.46850 * 60.00037 * 3 2 1 32 32 H 1.09005 * 109.46989 * 300.00216 * 4 2 1 33 33 H 1.09007 * 109.47289 * 59.99406 * 4 2 1 34 34 H 1.08996 * 109.47537 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46983 * 300.00302 * 5 2 1 36 36 H 1.08996 * 109.46867 * 180.02562 * 5 2 1 37 37 H 1.09001 * 109.47245 * 60.00110 * 6 5 2 38 38 H 1.09003 * 109.46912 * 299.99974 * 6 5 2 39 39 H 1.09001 * 109.47295 * 59.99809 * 7 6 5 40 40 H 1.08996 * 109.46637 * 299.99751 * 7 6 5 41 41 H 0.96994 * 120.00233 * 345.70843 * 8 7 6 42 42 H 1.07999 * 119.87786 * 359.97438 * 13 12 9 43 43 H 1.07995 * 119.75014 * 179.97438 * 14 13 12 44 44 H 1.08001 * 119.86885 * 180.02562 * 15 14 13 45 45 H 1.07998 * 120.12305 * 179.97438 * 16 15 14 46 46 H 0.97002 * 119.99919 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5302 -2.1638 1.2491 7 6 2.0397 -2.8849 2.4987 8 7 1.5510 -4.2659 2.4989 9 16 2.2141 -5.3787 3.5305 10 8 1.4774 -6.5807 3.3516 11 8 3.6221 -5.2971 3.3577 12 6 1.8817 -4.8310 5.1720 13 6 2.9161 -4.4488 5.9955 14 6 2.6575 -4.0171 7.2870 15 6 1.3567 -3.9655 7.7646 16 6 0.3072 -4.3438 6.9593 17 6 0.5573 -4.7773 5.6439 18 6 -0.5139 -5.1615 4.8048 19 1 -0.4263 -5.0540 3.7338 20 6 -1.6877 -5.6812 5.3622 21 7 -1.7165 -6.0239 6.6244 22 14 -3.2133 -5.8855 4.3039 23 1 -3.2071 -7.2337 3.6814 24 1 -4.4255 -5.7359 5.1486 25 1 -3.2204 -4.8493 3.2401 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7488 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7207 -1.2495 35 1 1.6767 -0.2075 2.1392 36 1 3.1300 -0.7208 1.2493 37 1 1.8935 -2.6775 0.3591 38 1 0.4401 -2.1638 1.2491 39 1 1.6760 -2.3710 3.3885 40 1 3.1297 -2.8848 2.4990 41 1 0.8363 -4.5276 1.8975 42 1 3.9332 -4.4854 5.6341 43 1 3.4753 -3.7194 7.9265 44 1 1.1668 -3.6270 8.7725 45 1 -0.7051 -4.3032 7.3334 46 1 -2.5303 -6.3837 7.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601353799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:53 Heat of formation + Delta-G solvation = -109.275856 kcal Electronic energy + Delta-G solvation = -26272.034690 eV Core-core repulsion = 22672.217181 eV Total energy + Delta-G solvation = -3599.817509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.38398 -39.15178 -38.02693 -36.65924 -36.40506 -35.65530 -32.08698 -31.75340 -31.33814 -28.08653 -28.06809 -27.36526 -26.30102 -23.44820 -22.98466 -22.68521 -20.29546 -19.52008 -19.36599 -18.39534 -17.87044 -17.26199 -16.94386 -16.32311 -16.01720 -15.94616 -15.22853 -15.09104 -15.01722 -14.91762 -14.87175 -14.46927 -13.85833 -13.68356 -13.56078 -13.26250 -13.04760 -12.97905 -12.94323 -12.84989 -12.78185 -12.62674 -12.56812 -12.50108 -12.46330 -12.27751 -12.13390 -11.81133 -11.65563 -11.29148 -11.27201 -11.22241 -11.18162 -11.09131 -10.20866 -9.83634 -9.42955 -8.79024 -6.61120 -0.14724 0.53485 0.97662 1.36546 1.48596 1.52846 2.15831 2.37271 2.64011 2.99421 3.48289 3.74403 3.91801 3.97671 3.98743 4.20161 4.28464 4.33649 4.49986 4.50740 4.63089 4.72004 4.74243 4.75884 4.86005 4.92533 4.93700 4.97744 5.00554 5.11819 5.15412 5.17083 5.18057 5.29487 5.29690 5.31368 5.37357 5.51348 5.52346 5.63139 5.64236 5.71072 5.82957 6.00701 6.08462 6.26098 6.47837 6.67872 6.83848 8.16920 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010874 B = 0.004366 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.401657 B = 6411.222665 C = 7305.643152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.107 4.107 6 C -0.122 4.122 7 C 0.117 3.883 8 N -1.110 6.110 9 S 2.719 3.281 10 O -1.000 7.000 11 O -1.011 7.011 12 C -0.793 4.793 13 C -0.017 4.017 14 C -0.251 4.251 15 C -0.076 4.076 16 C -0.186 4.186 17 C 0.162 3.838 18 C -0.474 4.474 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.809 5.809 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.259 1.259 25 H -0.242 1.242 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.420 0.580 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.115 0.885 46 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 12.061 -10.727 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.202 4.202 5 C -0.146 4.146 6 C -0.160 4.160 7 C -0.008 4.008 8 N -0.871 5.871 9 S 2.815 3.185 10 O -0.991 6.991 11 O -1.001 7.001 12 C -0.886 4.886 13 C -0.036 4.036 14 C -0.271 4.271 15 C -0.095 4.095 16 C -0.206 4.206 17 C 0.157 3.843 18 C -0.502 4.502 19 H 0.112 0.888 20 C -0.180 4.180 21 N -0.433 5.433 22 Si 0.795 3.205 23 H -0.192 1.192 24 H -0.183 1.183 25 H -0.165 1.165 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.256 0.744 42 H 0.140 0.860 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.133 0.867 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.517 11.249 -10.696 15.596 hybrid contribution -1.154 -0.140 0.502 1.267 sum 0.363 11.108 -10.194 15.081 Atomic orbital electron populations 1.21952 0.94667 1.01948 1.01715 1.20527 0.95682 0.95660 0.94953 1.21858 1.01065 0.94922 1.01876 1.21949 1.01054 1.00409 0.96789 1.21602 1.00991 0.93937 0.98046 1.21883 1.01871 0.95909 0.96377 1.21376 0.99021 0.80246 1.00205 1.55278 1.53686 1.23136 1.55001 1.00364 0.71864 0.72557 0.73717 1.93489 1.73336 1.45554 1.86702 1.93416 1.32314 1.87420 1.86932 1.30172 1.00365 1.33960 1.24150 1.20579 0.96732 0.92313 0.94012 1.20897 0.96702 1.12650 0.96832 1.21255 0.93248 0.96339 0.98631 1.21582 0.98775 1.04367 0.95884 1.17320 0.89832 0.84279 0.92865 1.20147 0.98892 1.35509 0.95660 0.88832 1.26826 1.02997 0.91636 0.96518 1.69822 1.30511 1.28295 1.14644 0.85288 0.75764 0.80236 0.79243 1.19202 1.18332 1.16521 0.92963 0.92260 0.92554 0.92490 0.92167 0.92792 0.92482 0.92290 0.92579 0.91810 0.91348 0.90202 0.90579 0.92522 0.91034 0.74446 0.86027 0.85484 0.85969 0.86727 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.12 71.98 0.58 -1.80 16 2 C -0.07 -1.10 0.80 -52.18 -0.04 -1.14 16 3 C -0.14 -2.02 8.47 71.98 0.61 -1.41 16 4 C -0.14 -2.21 8.12 71.98 0.58 -1.63 16 5 C -0.11 -2.03 4.27 30.59 0.13 -1.90 16 6 C -0.12 -2.65 4.65 30.59 0.14 -2.51 16 7 C 0.12 3.40 6.19 86.38 0.53 3.94 16 8 N -1.11 -38.02 5.14 -187.48 -0.96 -38.99 16 9 S 2.72 120.03 4.96 -56.49 -0.28 119.75 16 10 O -1.00 -50.78 16.52 -128.00 -2.12 -52.90 16 11 O -1.01 -46.08 16.53 -128.00 -2.12 -48.20 16 12 C -0.79 -38.29 5.90 22.73 0.13 -38.15 16 13 C -0.02 -0.75 9.53 22.22 0.21 -0.54 16 14 C -0.25 -10.61 10.05 22.46 0.23 -10.38 16 15 C -0.08 -3.35 10.02 22.22 0.22 -3.13 16 16 C -0.19 -9.33 8.66 22.73 0.20 -9.14 16 17 C 0.16 8.36 5.55 -21.29 -0.12 8.24 16 18 C -0.47 -24.06 7.63 23.46 0.18 -23.88 16 19 H 0.09 4.41 5.82 -2.91 -0.02 4.39 16 20 C 0.04 1.84 5.24 85.26 0.45 2.29 16 21 N -0.81 -40.45 10.85 21.83 0.24 -40.22 16 22 Si 0.98 36.36 29.57 68.60 2.03 38.39 16 23 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 24 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 25 H -0.24 -8.38 7.11 99.48 0.71 -7.68 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.97 6.43 -2.38 -0.02 0.95 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.91 6.43 -2.38 -0.02 0.89 16 33 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.61 6.43 -2.39 -0.02 1.59 16 38 H 0.08 1.62 6.43 -2.39 -0.02 1.61 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 2.06 7.82 -2.39 -0.02 2.04 16 41 H 0.42 12.66 8.47 -96.75 -0.82 11.84 16 42 H 0.12 5.02 7.32 -2.91 -0.02 5.00 16 43 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 44 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 45 H 0.11 5.87 6.22 -2.91 -0.02 5.85 16 46 H 0.30 13.21 8.30 -92.71 -0.77 12.44 16 Total: -1.00 -64.29 375.32 0.99 -63.30 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: 0.15 Total: 40.00 kcal Atomic # 6 Polarization: -85.19 SS G_CDS: 4.04 Total: -81.15 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -0.73 Total: -79.20 kcal Atomic # 8 Polarization: -96.87 SS G_CDS: -4.23 Total: -101.10 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Atomic # 16 Polarization: 120.03 SS G_CDS: -0.28 Total: 119.75 kcal Total: -64.29 0.99 -63.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601353799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.971 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds