Wall clock time and date at job start Tue Mar 31 2020 14:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46695 * 2 1 4 4 C 1.53002 * 109.46751 * 294.14981 * 3 2 1 5 5 C 1.52997 * 109.47519 * 300.00280 * 4 3 2 6 6 C 1.53004 * 109.47034 * 174.15631 * 3 2 1 7 7 C 1.52994 * 109.46969 * 174.68736 * 6 3 2 8 8 N 1.46495 * 109.47551 * 54.15162 * 3 2 1 9 9 S 1.65601 * 119.99816 * 62.90208 * 8 3 2 10 10 O 1.42094 * 106.40419 * 315.22758 * 9 8 3 11 11 O 1.42104 * 106.40035 * 182.30159 * 9 8 3 12 12 C 1.76207 * 107.21582 * 68.76578 * 9 8 3 13 13 C 1.37642 * 120.12783 * 245.94295 * 12 9 8 14 14 C 1.38602 * 120.24601 * 180.32033 * 13 12 9 15 15 C 1.38654 * 120.50466 * 359.67188 * 14 13 12 16 16 C 1.37598 * 120.25088 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.12662 * 65.64027 * 12 9 8 18 18 C 1.41395 * 120.24573 * 359.97438 * 17 12 9 19 19 H 1.08000 * 119.99704 * 30.41934 * 18 17 12 20 20 C 1.39941 * 120.00041 * 210.42162 * 18 17 12 21 21 N 1.30819 * 120.00165 * 188.34731 * 20 18 17 22 22 Si 1.86803 * 120.00126 * 8.34376 * 20 18 17 23 23 H 1.48501 * 109.47292 * 266.13768 * 22 20 18 24 24 H 1.48498 * 109.46981 * 26.13834 * 22 20 18 25 25 H 1.48496 * 109.47264 * 146.13594 * 22 20 18 26 26 H 1.08999 * 109.47141 * 299.99870 * 1 2 3 27 27 H 1.08997 * 109.47033 * 60.00679 * 1 2 3 28 28 H 1.08999 * 109.46761 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47298 * 239.99662 * 2 1 3 30 30 H 1.08997 * 109.47033 * 119.99321 * 2 1 3 31 31 H 1.09005 * 109.46997 * 60.00446 * 4 3 2 32 32 H 1.08999 * 109.46967 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47156 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47122 * 300.00090 * 5 4 3 35 35 H 1.08999 * 109.47083 * 59.99971 * 5 4 3 36 36 H 1.09004 * 109.46582 * 294.68790 * 6 3 2 37 37 H 1.09001 * 109.47249 * 54.68949 * 6 3 2 38 38 H 1.08998 * 109.47590 * 298.83850 * 7 6 3 39 39 H 1.09001 * 109.47055 * 58.84179 * 7 6 3 40 40 H 1.08997 * 109.47010 * 178.84040 * 7 6 3 41 41 H 0.96997 * 120.00282 * 242.90880 * 8 3 2 42 42 H 1.08005 * 119.87305 * 0.02562 * 13 12 9 43 43 H 1.08010 * 119.74955 * 179.69399 * 14 13 12 44 44 H 1.08004 * 119.88149 * 180.02562 * 15 14 13 45 45 H 1.07995 * 120.13167 * 180.02562 * 16 15 14 46 46 H 0.97002 * 120.00518 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6535 2.1200 -1.3163 5 6 2.2799 1.3576 -2.4855 6 6 3.5629 1.4451 0.1469 7 6 4.0856 2.8769 0.0142 8 7 1.4401 2.1726 1.1195 9 16 1.7513 1.7021 2.6765 10 8 1.6292 0.2867 2.7000 11 8 0.9916 2.5620 3.5149 12 6 3.4457 2.0607 3.0009 13 6 4.3382 1.0369 3.2236 14 6 5.6703 1.3164 3.4856 15 6 6.1208 2.6273 3.5198 16 6 5.2477 3.6665 3.2939 17 6 3.8929 3.3945 3.0269 18 6 2.9865 4.4542 2.7927 19 1 1.9485 4.3486 3.0717 20 6 3.4344 5.6398 2.1992 21 7 2.6407 6.6774 2.1305 22 14 5.1658 5.7408 1.5052 23 1 6.0797 6.2990 2.5340 24 1 5.6248 4.3820 1.1203 25 1 5.1693 6.6216 0.3097 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 0.5684 2.1182 -1.4210 32 1 2.0171 3.1475 -1.3165 33 1 2.0041 1.8400 -3.4233 34 1 3.3649 1.3594 -2.3809 35 1 1.9166 0.3299 -2.4855 36 1 3.8342 1.0484 1.1252 37 1 4.0042 0.8236 -0.6323 38 1 3.8322 3.2664 -0.9718 39 1 3.6286 3.5030 0.7806 40 1 5.1684 2.8814 0.1394 41 1 0.8606 2.9315 0.9488 42 1 3.9983 0.0120 3.1989 43 1 6.3627 0.5069 3.6641 44 1 7.1610 2.8336 3.7244 45 1 5.6007 4.6867 3.3206 46 1 2.9513 7.4993 1.7195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601357124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:56 Heat of formation + Delta-G solvation = -77.398536 kcal Electronic energy + Delta-G solvation = -28951.120818 eV Core-core repulsion = 25352.685614 eV Total energy + Delta-G solvation = -3598.435205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.29679 -39.50512 -37.94545 -36.65051 -35.62889 -33.19175 -33.10313 -32.38681 -31.85377 -31.13824 -27.23530 -26.76421 -24.82816 -23.75617 -22.99317 -22.67039 -20.35771 -19.77728 -19.48969 -18.46837 -18.24971 -17.21001 -16.94251 -16.42079 -16.03006 -15.87174 -15.63300 -15.29981 -15.14301 -14.80204 -14.53709 -14.11152 -13.97025 -13.76017 -13.58392 -13.35338 -13.20314 -13.01481 -12.95702 -12.88930 -12.73620 -12.67291 -12.47740 -12.23451 -12.16586 -12.09838 -12.00400 -11.76842 -11.57406 -11.42090 -11.21583 -11.06041 -10.92383 -10.84760 -10.08218 -9.73242 -9.46488 -8.93000 -6.69987 -0.09371 0.40248 0.83251 1.26218 1.37388 1.47126 2.06128 2.37418 2.55102 3.00980 3.39491 3.77690 3.86113 4.05774 4.06990 4.22400 4.33555 4.39249 4.45798 4.59796 4.65643 4.68201 4.68999 4.71664 4.77861 4.85086 4.94829 5.00609 5.06176 5.15584 5.23867 5.25212 5.33486 5.37215 5.40682 5.40975 5.44947 5.52824 5.55341 5.59066 5.72949 5.75407 5.87949 5.89849 6.11964 6.31247 6.38658 6.56489 6.72638 8.09928 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.007543 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.459828 B = 3710.917420 C = 4185.076110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.154 4.154 3 C 0.189 3.811 4 C -0.121 4.121 5 C -0.149 4.149 6 C -0.151 4.151 7 C -0.175 4.175 8 N -1.094 6.094 9 S 2.714 3.286 10 O -0.992 6.992 11 O -1.018 7.018 12 C -0.766 4.766 13 C 0.006 3.994 14 C -0.240 4.240 15 C -0.041 4.041 16 C -0.254 4.254 17 C 0.167 3.833 18 C -0.482 4.482 19 H 0.092 0.908 20 C 0.061 3.939 21 N -0.827 5.827 22 Si 0.933 3.067 23 H -0.275 1.275 24 H -0.202 1.202 25 H -0.286 1.286 26 H 0.029 0.971 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.416 0.584 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.099 0.901 46 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -8.826 -9.933 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.192 4.192 3 C 0.101 3.899 4 C -0.160 4.160 5 C -0.206 4.206 6 C -0.190 4.190 7 C -0.232 4.232 8 N -0.852 5.852 9 S 2.811 3.189 10 O -0.982 6.982 11 O -1.009 7.009 12 C -0.860 4.860 13 C -0.014 4.014 14 C -0.260 4.260 15 C -0.059 4.059 16 C -0.273 4.273 17 C 0.162 3.838 18 C -0.510 4.510 19 H 0.109 0.891 20 C -0.157 4.157 21 N -0.451 5.451 22 Si 0.758 3.242 23 H -0.202 1.202 24 H -0.124 1.124 25 H -0.213 1.213 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.250 0.750 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.116 0.884 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.724 -9.098 -9.383 13.350 hybrid contribution 0.773 1.580 0.144 1.765 sum 3.497 -7.518 -9.239 12.414 Atomic orbital electron populations 1.21688 0.95636 1.01565 1.01189 1.22393 0.97087 0.95324 1.04434 1.20306 0.91789 0.91434 0.86380 1.21796 1.01663 0.99780 0.92765 1.21866 1.01217 1.00815 0.96742 1.22316 0.94636 0.98262 1.03748 1.22340 1.00333 0.97809 1.02712 1.55250 1.62571 1.45316 1.22099 1.00526 0.74134 0.71994 0.72290 1.93417 1.87252 1.30653 1.86875 1.93463 1.71956 1.68481 1.67002 1.30090 1.23647 1.00082 1.32164 1.20630 0.93384 0.97017 0.90353 1.20944 0.95658 0.96432 1.12987 1.21199 0.98818 0.92865 0.93001 1.21230 0.95198 0.98084 1.12795 1.17056 0.92168 0.90306 0.84253 1.20144 0.98980 0.97385 1.34499 0.89053 1.26770 1.02254 0.93361 0.93313 1.69667 1.39408 1.03025 1.33031 0.86192 0.78359 0.81941 0.77722 1.20180 1.12378 1.21331 0.95199 0.91274 0.92196 0.88561 0.90381 0.90629 0.91833 0.91680 0.92125 0.91124 0.91420 0.88917 0.92137 0.90830 0.93615 0.74988 0.85266 0.84602 0.84923 0.88356 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.39 71.98 0.68 -3.01 16 2 C -0.15 -4.10 4.22 30.60 0.13 -3.97 16 3 C 0.19 5.42 0.31 3.61 0.00 5.42 16 4 C -0.12 -2.88 4.38 30.59 0.13 -2.74 16 5 C -0.15 -2.72 9.22 71.98 0.66 -2.06 16 6 C -0.15 -4.55 3.98 30.59 0.12 -4.42 16 7 C -0.18 -5.87 6.88 71.98 0.50 -5.38 16 8 N -1.09 -38.68 3.91 -152.21 -0.59 -39.28 16 9 S 2.71 115.61 4.81 -56.49 -0.27 115.34 16 10 O -0.99 -41.16 13.56 -128.00 -1.74 -42.90 16 11 O -1.02 -52.51 15.64 -128.00 -2.00 -54.51 16 12 C -0.77 -33.01 3.52 22.73 0.08 -32.93 16 13 C 0.01 0.22 7.62 22.22 0.17 0.39 16 14 C -0.24 -8.31 10.05 22.46 0.23 -8.08 16 15 C -0.04 -1.47 10.02 22.22 0.22 -1.24 16 16 C -0.25 -10.87 6.78 22.73 0.15 -10.71 16 17 C 0.17 7.75 3.42 -21.29 -0.07 7.68 16 18 C -0.48 -24.72 7.67 23.46 0.18 -24.54 16 19 H 0.09 5.27 5.63 -2.91 -0.02 5.26 16 20 C 0.06 3.01 5.24 85.26 0.45 3.45 16 21 N -0.83 -42.36 13.93 21.82 0.30 -42.06 16 22 Si 0.93 38.08 22.42 68.60 1.54 39.61 16 23 H -0.27 -11.14 6.81 99.48 0.68 -10.46 16 24 H -0.20 -7.69 3.91 99.48 0.39 -7.30 16 25 H -0.29 -11.28 7.11 99.48 0.71 -10.57 16 26 H 0.03 0.88 7.38 -2.39 -0.02 0.87 16 27 H 0.07 1.48 6.59 -2.39 -0.02 1.46 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 2.00 6.13 -2.39 -0.01 1.99 16 30 H 0.08 2.45 5.66 -2.39 -0.01 2.44 16 31 H 0.08 1.66 6.59 -2.38 -0.02 1.64 16 32 H 0.06 1.66 6.37 -2.39 -0.02 1.65 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.11 6.55 -2.38 -0.02 1.10 16 35 H 0.07 1.13 6.30 -2.39 -0.02 1.11 16 36 H 0.07 2.26 3.71 -2.39 -0.01 2.25 16 37 H 0.09 2.26 6.73 -2.39 -0.02 2.25 16 38 H 0.06 1.78 6.41 -2.39 -0.02 1.77 16 39 H 0.07 2.86 2.46 -2.39 -0.01 2.85 16 40 H 0.04 1.54 6.73 -2.39 -0.02 1.53 16 41 H 0.42 14.47 8.61 -96.75 -0.83 13.64 16 42 H 0.13 4.47 7.32 -2.91 -0.02 4.45 16 43 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 44 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 45 H 0.10 4.22 4.10 -2.91 -0.01 4.21 16 46 H 0.30 13.69 8.30 -92.71 -0.77 12.92 16 Total: -1.00 -61.68 328.77 0.72 -60.96 By element: Atomic # 1 Polarization: 45.14 SS G_CDS: -0.15 Total: 44.99 kcal Atomic # 6 Polarization: -85.79 SS G_CDS: 3.63 Total: -82.16 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -0.29 Total: -81.34 kcal Atomic # 8 Polarization: -93.67 SS G_CDS: -3.74 Total: -97.41 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 1.54 Total: 39.61 kcal Atomic # 16 Polarization: 115.61 SS G_CDS: -0.27 Total: 115.34 kcal Total: -61.68 0.72 -60.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601357124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.435 kcal (2) G-P(sol) polarization free energy of solvation -61.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds