Wall clock time and date at job start Tue Mar 31 2020 14:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46881 * 2 1 4 4 C 1.52995 * 109.47299 * 120.00044 * 2 1 3 5 5 N 1.46499 * 109.47546 * 180.81145 * 4 2 1 6 6 S 1.65595 * 120.00301 * 131.03941 * 5 4 2 7 7 O 1.42096 * 106.40294 * 180.63904 * 6 5 4 8 8 O 1.42100 * 106.40015 * 47.72074 * 6 5 4 9 9 C 1.76199 * 107.21879 * 294.18022 * 6 5 4 10 10 C 1.37649 * 120.12624 * 112.07213 * 9 6 5 11 11 C 1.38615 * 120.24643 * 180.32002 * 10 9 6 12 12 C 1.38663 * 120.49968 * 359.67496 * 11 10 9 13 13 C 1.37594 * 120.24791 * 359.97438 * 12 11 10 14 14 C 1.40694 * 120.13243 * 291.76750 * 9 6 5 15 15 C 1.41402 * 120.23907 * 359.97438 * 14 9 6 16 16 H 1.08004 * 120.00028 * 30.94215 * 15 14 9 17 17 C 1.39948 * 119.99908 * 210.94167 * 15 14 9 18 18 N 1.30825 * 119.99883 * 26.68983 * 17 15 14 19 19 Si 1.86800 * 119.99783 * 206.69434 * 17 15 14 20 20 H 1.48503 * 109.47125 * 269.99884 * 19 17 15 21 21 H 1.48497 * 109.47175 * 29.99965 * 19 17 15 22 22 H 1.48505 * 109.47114 * 149.99753 * 19 17 15 23 23 C 1.53001 * 109.46770 * 60.81484 * 4 2 1 24 24 C 1.52992 * 109.47649 * 65.00165 * 23 4 2 25 25 C 1.53006 * 109.47007 * 185.00142 * 23 4 2 26 26 H 1.08995 * 109.47063 * 301.06889 * 1 2 3 27 27 H 1.09005 * 109.47302 * 61.07172 * 1 2 3 28 28 H 1.08995 * 109.47059 * 181.06604 * 1 2 3 29 29 H 1.09004 * 109.47355 * 240.00387 * 2 1 3 30 30 H 1.08995 * 109.47450 * 305.89323 * 3 2 1 31 31 H 1.09004 * 109.46992 * 65.89932 * 3 2 1 32 32 H 1.09000 * 109.47039 * 185.88914 * 3 2 1 33 33 H 1.09000 * 109.47201 * 300.81531 * 4 2 1 34 34 H 0.97009 * 119.99764 * 311.04576 * 5 4 2 35 35 H 1.07998 * 119.87552 * 0.02562 * 10 9 6 36 36 H 1.07998 * 119.75081 * 179.69381 * 11 10 9 37 37 H 1.07998 * 119.87541 * 180.02562 * 12 11 10 38 38 H 1.08004 * 120.12711 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99693 * 3.08132 * 18 17 15 40 40 H 1.09002 * 109.47307 * 304.99661 * 23 4 2 41 41 H 1.08996 * 109.47292 * 61.95532 * 24 23 4 42 42 H 1.08997 * 109.47613 * 181.95750 * 24 23 4 43 43 H 1.09004 * 109.47007 * 301.95543 * 24 23 4 44 44 H 1.09002 * 109.46921 * 60.13073 * 25 23 4 45 45 H 1.08995 * 109.47045 * 180.12502 * 25 23 4 46 46 H 1.08992 * 109.46894 * 300.12764 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5049 -0.7043 1.2591 6 16 4.3184 -0.2354 2.6230 7 8 5.7026 -0.3121 2.3110 8 8 3.7256 -0.9393 3.7057 9 6 3.9608 1.4702 2.8831 10 6 3.2061 1.8606 3.9661 11 6 2.9177 3.2011 4.1694 12 6 3.3902 4.1638 3.2905 13 6 4.1524 3.7972 2.2052 14 6 4.4508 2.4391 1.9883 15 6 5.2329 2.0505 0.8762 16 1 5.0681 1.0908 0.4090 17 6 6.2205 2.9095 0.3809 18 7 6.7889 3.7797 1.1754 19 14 6.7271 2.8134 -1.4145 20 1 7.8445 1.8465 -1.5625 21 1 5.5717 2.3633 -2.2315 22 1 7.1680 4.1540 -1.8769 23 6 1.5468 -2.1695 1.2389 24 6 2.1734 -2.9134 0.0579 25 6 1.9508 -2.8551 2.5457 26 1 -0.3633 0.5303 0.8802 27 1 -0.3634 0.4971 -0.8995 28 1 -0.3633 -1.0274 0.0191 29 1 1.8934 -0.5138 -0.8900 30 1 1.5931 1.9860 -0.8325 31 1 1.7654 1.9250 0.9381 32 1 3.1248 1.4444 -0.1054 33 1 1.6648 -0.2159 2.1391 34 1 3.9983 -0.9678 0.4665 35 1 2.8334 1.1192 4.6573 36 1 2.3208 3.4979 5.0191 37 1 3.1598 5.2054 3.4588 38 1 4.5198 4.5487 1.5220 39 1 6.5581 3.7996 2.1173 40 1 0.4612 -2.1830 1.1421 41 1 3.2572 -2.9301 0.1727 42 1 1.7953 -3.9353 0.0302 43 1 1.9142 -2.4048 -0.8707 44 1 1.5024 -2.3266 3.3870 45 1 1.6014 -3.8875 2.5375 46 1 3.0362 -2.8397 2.6437 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601374258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:01 Heat of formation + Delta-G solvation = -90.192858 kcal Electronic energy + Delta-G solvation = -28225.049805 eV Core-core repulsion = 24626.059797 eV Total energy + Delta-G solvation = -3598.990008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.59540 -37.80406 -36.19997 -34.83834 -34.06267 -33.37062 -32.05255 -30.18368 -29.53419 -26.98776 -26.69090 -25.50060 -25.14067 -21.81207 -21.23560 -20.75273 -19.28385 -18.65792 -18.23088 -16.77618 -16.17983 -15.86781 -15.05337 -14.83640 -14.52028 -14.44664 -14.14733 -13.75133 -13.61263 -13.26637 -12.97909 -12.60519 -12.50222 -12.26980 -12.12260 -11.94368 -11.84832 -11.55275 -11.53664 -11.23044 -11.16158 -11.13594 -10.99804 -10.94563 -10.84606 -10.70180 -10.60710 -10.51467 -10.42927 -10.28462 -10.01133 -9.86307 -9.42475 -9.15357 -8.72950 -8.19828 -7.79165 -7.49314 -4.80910 1.53951 2.24000 2.66205 3.06322 3.16922 3.23626 3.86512 3.93603 4.34556 4.71805 4.83144 5.04982 5.08460 5.19918 5.26466 5.42584 5.53083 5.59344 5.72571 5.77531 5.79527 5.89685 5.91895 6.02991 6.05954 6.13873 6.14987 6.21502 6.25411 6.27317 6.32570 6.37263 6.46575 6.54717 6.63326 6.73009 6.81378 6.89583 7.02007 7.12779 7.28813 7.37437 7.51384 7.62304 7.65694 7.83390 7.98608 8.35593 8.58302 9.79359 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.006523 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.336556 B = 4291.270789 C = 4799.139177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.157 4.157 4 C 0.172 3.828 5 N -1.112 6.112 6 S 2.697 3.303 7 O -0.967 6.967 8 O -0.993 6.993 9 C -0.777 4.777 10 C 0.012 3.988 11 C -0.264 4.264 12 C -0.056 4.056 13 C -0.207 4.207 14 C 0.173 3.827 15 C -0.497 4.497 16 H 0.088 0.912 17 C 0.045 3.955 18 N -0.771 5.771 19 Si 1.061 2.939 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.109 4.109 24 C -0.147 4.147 25 C -0.145 4.145 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.409 0.591 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.302 0.698 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -6.193 -4.424 11.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.214 4.214 4 C 0.064 3.936 5 N -0.867 5.867 6 S 2.794 3.206 7 O -0.958 6.958 8 O -0.983 6.983 9 C -0.872 4.872 10 C -0.008 4.008 11 C -0.284 4.284 12 C -0.075 4.075 13 C -0.227 4.227 14 C 0.168 3.832 15 C -0.524 4.524 16 H 0.106 0.894 17 C -0.180 4.180 18 N -0.392 5.392 19 Si 0.884 3.116 20 H -0.196 1.196 21 H -0.194 1.194 22 H -0.196 1.196 23 C -0.129 4.129 24 C -0.204 4.204 25 C -0.202 4.202 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.243 0.757 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.599 -6.002 -4.830 10.821 hybrid contribution -1.177 0.120 0.842 1.452 sum -8.776 -5.882 -3.988 11.293 Atomic orbital electron populations 1.21900 0.95449 1.01399 1.01771 1.21464 0.95242 0.97540 0.97991 1.22042 1.03887 0.94136 1.01368 1.20692 0.79466 0.94664 0.98771 1.55719 1.14456 1.84010 1.32562 1.01187 0.72771 0.74457 0.72157 1.93548 1.30818 1.87647 1.83769 1.93465 1.78987 1.72726 1.53163 1.29885 1.27042 1.21571 1.08726 1.20324 0.91431 0.95765 0.93266 1.20430 1.11337 0.93272 1.03401 1.20812 0.95329 0.97231 0.94105 1.21257 1.04950 0.96390 1.00126 1.16907 0.87335 0.90647 0.88340 1.20790 1.15507 1.04940 1.11175 0.89401 1.27054 0.92894 0.91028 1.07016 1.70435 1.31084 1.28751 1.08921 0.83699 0.77608 0.78056 0.72272 1.19628 1.19444 1.19618 1.21579 1.00112 0.95249 0.96003 1.21841 1.01318 0.99439 0.97827 1.21861 1.02717 0.99048 0.96571 0.92658 0.92846 0.92598 0.90902 0.93790 0.92504 0.89779 0.89761 0.75698 0.87431 0.88716 0.88813 0.87603 0.88427 0.90477 0.92409 0.93219 0.92522 0.92112 0.93700 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.90 37.16 0.33 -1.33 16 2 C -0.10 -1.36 2.46 -90.62 -0.22 -1.58 16 3 C -0.16 -2.52 8.52 37.16 0.32 -2.20 16 4 C 0.17 2.50 1.52 -67.93 -0.10 2.40 16 5 N -1.11 -18.47 2.95 -4.89 -0.01 -18.48 16 6 S 2.70 56.72 4.74 -107.50 -0.51 56.21 16 7 O -0.97 -23.78 16.33 -57.17 -0.93 -24.71 16 8 O -0.99 -21.35 14.05 -57.17 -0.80 -22.15 16 9 C -0.78 -17.56 5.96 -38.87 -0.23 -17.79 16 10 C 0.01 0.26 9.54 -39.66 -0.38 -0.12 16 11 C -0.26 -5.52 10.05 -39.29 -0.39 -5.91 16 12 C -0.06 -1.19 10.02 -39.66 -0.40 -1.59 16 13 C -0.21 -4.80 8.06 -38.88 -0.31 -5.12 16 14 C 0.17 4.09 4.36 -106.83 -0.47 3.62 16 15 C -0.50 -11.81 5.86 -37.74 -0.22 -12.03 16 16 H 0.09 1.97 5.49 -52.48 -0.29 1.69 16 17 C 0.05 1.08 4.86 -17.34 -0.08 0.99 16 18 N -0.77 -19.38 12.63 55.55 0.70 -18.68 16 19 Si 1.06 20.27 30.01 -169.99 -5.10 15.17 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 C -0.11 -1.37 2.54 -90.62 -0.23 -1.60 16 24 C -0.15 -1.65 8.64 37.15 0.32 -1.33 16 25 C -0.14 -2.05 7.97 37.16 0.30 -1.75 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.55 6.29 -51.93 -0.33 0.23 16 29 H 0.07 0.90 6.49 -51.93 -0.34 0.56 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.51 4.88 -51.93 -0.25 1.26 16 33 H 0.08 1.33 7.85 -51.93 -0.41 0.93 16 34 H 0.41 6.18 7.93 -34.47 -0.27 5.91 16 35 H 0.11 2.17 7.32 -52.49 -0.38 1.79 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.11 2.49 6.99 -52.48 -0.37 2.12 16 39 H 0.30 7.87 6.93 -40.82 -0.28 7.59 16 40 H 0.08 0.85 6.18 -51.93 -0.32 0.53 16 41 H 0.06 0.68 7.10 -51.93 -0.37 0.31 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.58 6.46 -51.93 -0.34 0.25 16 44 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.99 6.30 -51.93 -0.33 0.66 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -28.15 360.53 -9.87 -38.03 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -6.87 Total: 14.53 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: -1.78 Total: -45.34 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.69 Total: -37.17 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.74 Total: -46.86 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.10 Total: 15.17 kcal Atomic # 16 Polarization: 56.72 SS G_CDS: -0.51 Total: 56.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.15 -9.87 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601374258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.164 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds