Wall clock time and date at job start Tue Mar 31 2020 14:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46881 * 2 1 4 4 C 1.52995 * 109.47299 * 120.00044 * 2 1 3 5 5 N 1.46499 * 109.47546 * 180.81145 * 4 2 1 6 6 S 1.65595 * 120.00301 * 131.03941 * 5 4 2 7 7 O 1.42096 * 106.40294 * 180.63904 * 6 5 4 8 8 O 1.42100 * 106.40015 * 47.72074 * 6 5 4 9 9 C 1.76199 * 107.21879 * 294.18022 * 6 5 4 10 10 C 1.37649 * 120.12624 * 112.07213 * 9 6 5 11 11 C 1.38615 * 120.24643 * 180.32002 * 10 9 6 12 12 C 1.38663 * 120.49968 * 359.67496 * 11 10 9 13 13 C 1.37594 * 120.24791 * 359.97438 * 12 11 10 14 14 C 1.40694 * 120.13243 * 291.76750 * 9 6 5 15 15 C 1.41402 * 120.23907 * 359.97438 * 14 9 6 16 16 H 1.08004 * 120.00028 * 30.94215 * 15 14 9 17 17 C 1.39948 * 119.99908 * 210.94167 * 15 14 9 18 18 N 1.30825 * 119.99883 * 26.68983 * 17 15 14 19 19 Si 1.86800 * 119.99783 * 206.69434 * 17 15 14 20 20 H 1.48503 * 109.47125 * 269.99884 * 19 17 15 21 21 H 1.48497 * 109.47175 * 29.99965 * 19 17 15 22 22 H 1.48505 * 109.47114 * 149.99753 * 19 17 15 23 23 C 1.53001 * 109.46770 * 60.81484 * 4 2 1 24 24 C 1.52992 * 109.47649 * 65.00165 * 23 4 2 25 25 C 1.53006 * 109.47007 * 185.00142 * 23 4 2 26 26 H 1.08995 * 109.47063 * 301.06889 * 1 2 3 27 27 H 1.09005 * 109.47302 * 61.07172 * 1 2 3 28 28 H 1.08995 * 109.47059 * 181.06604 * 1 2 3 29 29 H 1.09004 * 109.47355 * 240.00387 * 2 1 3 30 30 H 1.08995 * 109.47450 * 305.89323 * 3 2 1 31 31 H 1.09004 * 109.46992 * 65.89932 * 3 2 1 32 32 H 1.09000 * 109.47039 * 185.88914 * 3 2 1 33 33 H 1.09000 * 109.47201 * 300.81531 * 4 2 1 34 34 H 0.97009 * 119.99764 * 311.04576 * 5 4 2 35 35 H 1.07998 * 119.87552 * 0.02562 * 10 9 6 36 36 H 1.07998 * 119.75081 * 179.69381 * 11 10 9 37 37 H 1.07998 * 119.87541 * 180.02562 * 12 11 10 38 38 H 1.08004 * 120.12711 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99693 * 3.08132 * 18 17 15 40 40 H 1.09002 * 109.47307 * 304.99661 * 23 4 2 41 41 H 1.08996 * 109.47292 * 61.95532 * 24 23 4 42 42 H 1.08997 * 109.47613 * 181.95750 * 24 23 4 43 43 H 1.09004 * 109.47007 * 301.95543 * 24 23 4 44 44 H 1.09002 * 109.46921 * 60.13073 * 25 23 4 45 45 H 1.08995 * 109.47045 * 180.12502 * 25 23 4 46 46 H 1.08992 * 109.46894 * 300.12764 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5049 -0.7043 1.2591 6 16 4.3184 -0.2354 2.6230 7 8 5.7026 -0.3121 2.3110 8 8 3.7256 -0.9393 3.7057 9 6 3.9608 1.4702 2.8831 10 6 3.2061 1.8606 3.9661 11 6 2.9177 3.2011 4.1694 12 6 3.3902 4.1638 3.2905 13 6 4.1524 3.7972 2.2052 14 6 4.4508 2.4391 1.9883 15 6 5.2329 2.0505 0.8762 16 1 5.0681 1.0908 0.4090 17 6 6.2205 2.9095 0.3809 18 7 6.7889 3.7797 1.1754 19 14 6.7271 2.8134 -1.4145 20 1 7.8445 1.8465 -1.5625 21 1 5.5717 2.3633 -2.2315 22 1 7.1680 4.1540 -1.8769 23 6 1.5468 -2.1695 1.2389 24 6 2.1734 -2.9134 0.0579 25 6 1.9508 -2.8551 2.5457 26 1 -0.3633 0.5303 0.8802 27 1 -0.3634 0.4971 -0.8995 28 1 -0.3633 -1.0274 0.0191 29 1 1.8934 -0.5138 -0.8900 30 1 1.5931 1.9860 -0.8325 31 1 1.7654 1.9250 0.9381 32 1 3.1248 1.4444 -0.1054 33 1 1.6648 -0.2159 2.1391 34 1 3.9983 -0.9678 0.4665 35 1 2.8334 1.1192 4.6573 36 1 2.3208 3.4979 5.0191 37 1 3.1598 5.2054 3.4588 38 1 4.5198 4.5487 1.5220 39 1 6.5581 3.7996 2.1173 40 1 0.4612 -2.1830 1.1421 41 1 3.2572 -2.9301 0.1727 42 1 1.7953 -3.9353 0.0302 43 1 1.9142 -2.4048 -0.8707 44 1 1.5024 -2.3266 3.3870 45 1 1.6014 -3.8875 2.5375 46 1 3.0362 -2.8397 2.6437 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601374258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:00 Heat of formation + Delta-G solvation = -106.005733 kcal Electronic energy + Delta-G solvation = -28225.735503 eV Core-core repulsion = 24626.059797 eV Total energy + Delta-G solvation = -3599.675706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.82152 -39.47665 -37.96578 -36.63385 -35.82596 -34.44393 -33.34999 -31.92500 -31.29336 -28.01852 -27.78872 -27.12232 -26.42748 -23.54348 -22.99665 -21.85356 -20.42125 -20.28661 -19.95365 -18.39541 -17.84375 -17.22432 -16.61617 -16.35929 -15.93440 -15.74746 -15.54106 -15.30983 -15.04238 -14.83981 -14.41328 -14.09372 -13.78600 -13.59171 -13.38565 -13.25965 -13.12914 -13.01264 -12.93530 -12.83456 -12.77259 -12.72098 -12.59816 -12.24225 -12.15052 -12.03449 -11.96759 -11.87581 -11.65011 -11.58557 -11.40446 -11.10124 -11.06846 -10.88317 -10.08600 -9.93790 -9.56784 -9.32193 -6.62928 -0.12499 0.47335 0.91026 1.49857 1.63267 1.76376 2.29637 2.37985 2.61461 3.01695 3.37764 3.70844 3.85258 3.98947 4.11340 4.23154 4.28099 4.35573 4.37201 4.53059 4.59472 4.64419 4.77844 4.80962 4.84938 4.91031 4.95203 5.00508 5.12431 5.14835 5.18673 5.23347 5.27346 5.34123 5.34540 5.39966 5.47738 5.51993 5.60932 5.62834 5.69466 5.73076 5.74672 5.87913 6.04278 6.20790 6.31393 6.58698 6.81426 7.92984 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.006523 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.336556 B = 4291.270789 C = 4799.139177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.155 4.155 4 C 0.166 3.834 5 N -1.099 6.099 6 S 2.713 3.287 7 O -1.007 7.007 8 O -1.000 7.000 9 C -0.789 4.789 10 C -0.002 4.002 11 C -0.261 4.261 12 C -0.055 4.055 13 C -0.229 4.229 14 C 0.163 3.837 15 C -0.519 4.519 16 H 0.094 0.906 17 C 0.010 3.990 18 N -0.799 5.799 19 Si 1.101 2.899 20 H -0.266 1.266 21 H -0.245 1.245 22 H -0.269 1.269 23 C -0.103 4.103 24 C -0.147 4.147 25 C -0.148 4.148 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.418 0.582 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.284 0.716 40 H 0.102 0.898 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.066 0.934 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.238 -7.353 -5.741 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.212 4.212 4 C 0.059 3.941 5 N -0.858 5.858 6 S 2.810 3.190 7 O -0.997 6.997 8 O -0.990 6.990 9 C -0.883 4.883 10 C -0.022 4.022 11 C -0.281 4.281 12 C -0.074 4.074 13 C -0.248 4.248 14 C 0.158 3.842 15 C -0.546 4.546 16 H 0.111 0.889 17 C -0.209 4.209 18 N -0.420 5.420 19 Si 0.917 3.083 20 H -0.191 1.191 21 H -0.168 1.168 22 H -0.194 1.194 23 C -0.123 4.123 24 C -0.205 4.205 25 C -0.205 4.205 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.254 0.746 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.771 -7.154 -6.131 13.573 hybrid contribution -0.639 0.447 1.390 1.593 sum -10.410 -6.707 -4.742 13.260 Atomic orbital electron populations 1.21883 0.93409 1.02839 1.02041 1.21434 0.96816 0.95454 0.97799 1.21984 1.02592 0.96182 1.00458 1.20941 0.77745 0.96465 0.98947 1.55317 1.15551 1.83326 1.31598 1.00537 0.71953 0.73809 0.72739 1.93490 1.33700 1.87975 1.84582 1.93451 1.78869 1.72519 1.54185 1.30170 1.26660 1.22545 1.08897 1.20617 0.91516 0.96733 0.93297 1.20818 1.10650 0.92798 1.03835 1.21148 0.94129 0.98914 0.93211 1.21295 1.06204 0.96203 1.01147 1.17100 0.87418 0.91119 0.88576 1.20943 1.16147 1.05562 1.11936 0.88852 1.28353 0.92490 0.90147 1.09934 1.70558 1.32692 1.30717 1.08068 0.83269 0.78320 0.78275 0.68453 1.19117 1.16817 1.19382 1.21572 1.01545 0.93383 0.95794 1.21857 1.00598 1.00414 0.97590 1.21883 1.01037 1.00524 0.97084 0.93395 0.91715 0.90500 0.89170 0.92704 0.94928 0.91949 0.91381 0.74617 0.86185 0.85690 0.86052 0.88810 0.90366 0.88012 0.93498 0.91572 0.91094 0.93502 0.91504 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.90 71.98 0.64 -2.14 16 2 C -0.10 -2.31 2.46 -10.79 -0.03 -2.33 16 3 C -0.15 -4.84 8.52 71.98 0.61 -4.23 16 4 C 0.17 4.58 1.52 44.99 0.07 4.65 16 5 N -1.10 -36.05 2.95 -169.39 -0.50 -36.55 16 6 S 2.71 115.86 4.74 -56.49 -0.27 115.59 16 7 O -1.01 -50.83 16.33 -128.00 -2.09 -52.92 16 8 O -1.00 -43.34 14.05 -128.00 -1.80 -45.14 16 9 C -0.79 -36.22 5.96 22.73 0.14 -36.09 16 10 C 0.00 -0.08 9.54 22.22 0.21 0.13 16 11 C -0.26 -10.60 10.05 22.46 0.23 -10.37 16 12 C -0.06 -2.33 10.02 22.22 0.22 -2.11 16 13 C -0.23 -10.84 8.06 22.73 0.18 -10.65 16 14 C 0.16 7.89 4.36 -21.29 -0.09 7.80 16 15 C -0.52 -25.25 5.86 23.46 0.14 -25.11 16 16 H 0.09 4.29 5.49 -2.91 -0.02 4.27 16 17 C 0.01 0.48 4.86 85.26 0.41 0.89 16 18 N -0.80 -41.70 12.63 21.83 0.28 -41.42 16 19 Si 1.10 40.81 30.01 68.60 2.06 42.87 16 20 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.24 -8.00 7.11 99.48 0.71 -7.29 16 22 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 23 C -0.10 -2.31 2.54 -10.79 -0.03 -2.34 16 24 C -0.15 -2.83 8.64 71.98 0.62 -2.21 16 25 C -0.15 -3.95 7.97 71.98 0.57 -3.38 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.08 1.18 6.29 -2.39 -0.02 1.16 16 29 H 0.09 1.91 6.49 -2.38 -0.02 1.90 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 2.23 4.88 -2.39 -0.01 2.22 16 33 H 0.07 2.11 7.85 -2.39 -0.02 2.10 16 34 H 0.42 12.38 7.93 -96.74 -0.77 11.62 16 35 H 0.12 4.79 7.32 -2.91 -0.02 4.77 16 36 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.09 4.60 6.99 -2.91 -0.02 4.58 16 39 H 0.28 15.58 6.93 -92.71 -0.64 14.94 16 40 H 0.10 1.83 6.18 -2.39 -0.01 1.82 16 41 H 0.05 1.00 7.10 -2.39 -0.02 0.99 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.17 6.46 -2.38 -0.02 1.15 16 44 H 0.05 1.35 8.05 -2.39 -0.02 1.34 16 45 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.04 1.16 6.30 -2.39 -0.02 1.15 16 Total: -1.00 -62.48 360.53 1.93 -60.56 By element: Atomic # 1 Polarization: 44.16 SS G_CDS: 0.35 Total: 44.51 kcal Atomic # 6 Polarization: -91.39 SS G_CDS: 3.90 Total: -87.48 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -0.22 Total: -77.97 kcal Atomic # 8 Polarization: -94.18 SS G_CDS: -3.89 Total: -98.07 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.06 Total: 42.87 kcal Atomic # 16 Polarization: 115.86 SS G_CDS: -0.27 Total: 115.59 kcal Total: -62.48 1.93 -60.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601374258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.449 kcal (2) G-P(sol) polarization free energy of solvation -62.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds