Wall clock time and date at job start Tue Mar 31 2020 14:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47453 * 2 1 4 4 C 1.52999 * 109.47449 * 120.00814 * 2 1 3 5 5 C 1.53002 * 109.47005 * 59.99289 * 4 2 1 6 6 C 1.53009 * 109.46780 * 299.99881 * 4 2 1 7 7 C 1.52996 * 109.47449 * 179.97438 * 4 2 1 8 8 N 1.46495 * 109.47215 * 180.02562 * 7 4 2 9 9 S 1.65603 * 120.00053 * 165.97830 * 8 7 4 10 10 O 1.42101 * 106.39991 * 176.36711 * 9 8 7 11 11 O 1.42092 * 106.40408 * 309.28739 * 9 8 7 12 12 C 1.76201 * 107.21955 * 62.83012 * 9 8 7 13 13 C 1.37635 * 120.12448 * 245.78615 * 12 9 8 14 14 C 1.38617 * 120.24681 * 179.97438 * 13 12 9 15 15 C 1.38659 * 120.50330 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.24470 * 0.02807 * 15 14 13 17 17 C 1.40693 * 120.13096 * 65.50604 * 12 9 8 18 18 C 1.41403 * 120.24117 * 359.97438 * 17 12 9 19 19 H 1.07998 * 120.00231 * 331.33194 * 18 17 12 20 20 C 1.39946 * 119.99677 * 151.32978 * 18 17 12 21 21 N 1.30830 * 120.00074 * 348.69248 * 20 18 17 22 22 Si 1.86803 * 120.00181 * 168.69509 * 20 18 17 23 23 H 1.48503 * 109.46919 * 89.99484 * 22 20 18 24 24 H 1.48493 * 109.47384 * 209.99900 * 22 20 18 25 25 H 1.48498 * 109.46543 * 329.99966 * 22 20 18 26 26 H 1.09003 * 109.47259 * 299.99760 * 1 2 3 27 27 H 1.08999 * 109.47631 * 59.99198 * 1 2 3 28 28 H 1.09002 * 109.47535 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46746 * 240.00807 * 2 1 3 30 30 H 1.09003 * 109.47492 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47357 * 300.00970 * 3 2 1 32 32 H 1.09008 * 109.46435 * 60.00249 * 3 2 1 33 33 H 1.09008 * 109.46874 * 180.02562 * 5 4 2 34 34 H 1.08998 * 109.47198 * 300.00459 * 5 4 2 35 35 H 1.08996 * 109.47050 * 60.00606 * 5 4 2 36 36 H 1.09004 * 109.46565 * 299.99878 * 6 4 2 37 37 H 1.08998 * 109.47364 * 59.99577 * 6 4 2 38 38 H 1.08999 * 109.46698 * 180.02562 * 6 4 2 39 39 H 1.08995 * 109.47332 * 59.99054 * 7 4 2 40 40 H 1.09006 * 109.46390 * 299.99653 * 7 4 2 41 41 H 0.97002 * 119.99618 * 345.69592 * 8 7 4 42 42 H 1.07995 * 119.87813 * 359.97438 * 13 12 9 43 43 H 1.07999 * 119.75047 * 179.97438 * 14 13 12 44 44 H 1.07990 * 119.87871 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.12627 * 179.97438 * 16 15 14 46 46 H 0.96996 * 119.99817 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.5299 -2.1639 1.2490 6 6 1.5300 -0.0002 2.4985 7 6 3.5700 -0.7220 1.2488 8 7 4.0583 -1.4132 2.4445 9 16 5.6461 -1.8732 2.5446 10 8 5.8211 -2.4317 3.8395 11 8 5.9349 -2.5815 1.3472 12 6 6.6184 -0.4044 2.5008 13 6 7.4556 -0.1618 1.4356 14 6 8.2213 0.9931 1.3983 15 6 8.1540 1.9159 2.4311 16 6 7.3248 1.6934 3.5064 17 6 6.5376 0.5276 3.5516 18 6 5.6762 0.2920 4.6479 19 1 4.7789 -0.2938 4.5135 20 6 5.9864 0.8179 5.9071 21 7 7.1684 1.3338 6.1275 22 14 4.7130 0.7833 7.2734 23 1 4.8469 -0.4798 8.0429 24 1 4.9275 1.9400 8.1795 25 1 3.3524 0.8618 6.6838 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5137 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.8930 -2.6777 2.1392 34 1 0.4399 -2.1638 1.2490 35 1 1.8932 -2.6776 0.3590 36 1 1.8934 1.0275 2.4985 37 1 0.4401 -0.0002 2.4985 38 1 1.8938 -0.5139 3.3884 39 1 3.9337 0.3055 1.2485 40 1 3.9329 -1.2360 0.3587 41 1 3.4526 -1.5979 3.1793 42 1 7.5162 -0.8738 0.6259 43 1 8.8758 1.1753 0.5587 44 1 8.7553 2.8120 2.3918 45 1 7.2742 2.4132 4.3099 46 1 7.3835 1.6980 7.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601398988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:05 Heat of formation + Delta-G solvation = -82.158282 kcal Electronic energy + Delta-G solvation = -27336.968325 eV Core-core repulsion = 23738.326723 eV Total energy + Delta-G solvation = -3598.641603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.02639 -37.57421 -36.16748 -34.78947 -34.13245 -33.82516 -30.67505 -30.17459 -29.53935 -27.95744 -26.98311 -25.56238 -25.13354 -22.08580 -21.63746 -21.11736 -18.72894 -18.07498 -17.69350 -16.84005 -16.22891 -15.60778 -15.31083 -15.11945 -14.42461 -14.38231 -14.21796 -14.06888 -13.46718 -13.25634 -13.14537 -12.88723 -12.75476 -12.35389 -12.08380 -11.93328 -11.85614 -11.71214 -11.51105 -11.29307 -11.25887 -11.17012 -11.15108 -11.08300 -11.01051 -10.96838 -10.69976 -10.51645 -10.36064 -10.24260 -10.15398 -9.89805 -9.43182 -9.37459 -8.67415 -8.02051 -7.58804 -7.01785 -4.74840 1.58836 2.35437 2.74190 2.96313 2.99561 3.12213 3.77346 4.00261 4.42197 4.70477 4.75981 4.80445 4.85005 5.20728 5.32020 5.34340 5.39941 5.55316 5.66037 5.68114 5.76039 5.80502 5.84986 5.92727 5.98319 6.02343 6.05026 6.08242 6.13729 6.14661 6.25088 6.25708 6.31337 6.40936 6.48031 6.54294 6.63057 6.79059 6.96936 7.10152 7.32221 7.50277 7.59406 7.70374 7.82089 7.90681 8.30148 8.51426 8.66354 9.90961 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.005703 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.179076 B = 4908.298971 C = 5667.741530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.156 4.156 4 C -0.064 4.064 5 C -0.144 4.144 6 C -0.147 4.147 7 C 0.132 3.868 8 N -1.120 6.120 9 S 2.700 3.300 10 O -0.967 6.967 11 O -0.999 6.999 12 C -0.774 4.774 13 C -0.004 4.004 14 C -0.250 4.250 15 C -0.077 4.077 16 C -0.158 4.158 17 C 0.187 3.813 18 C -0.444 4.444 19 H 0.087 0.913 20 C 0.080 3.920 21 N -0.778 5.778 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.256 1.256 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.409 0.591 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 0.988 -6.339 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.213 4.213 4 C -0.066 4.066 5 C -0.201 4.201 6 C -0.204 4.204 7 C 0.006 3.994 8 N -0.878 5.878 9 S 2.797 3.203 10 O -0.957 6.957 11 O -0.990 6.990 12 C -0.869 4.869 13 C -0.024 4.024 14 C -0.271 4.271 15 C -0.096 4.096 16 C -0.178 4.178 17 C 0.182 3.818 18 C -0.472 4.472 19 H 0.105 0.895 20 C -0.141 4.141 21 N -0.401 5.401 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.179 1.179 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.244 0.756 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.143 0.857 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.777 0.223 -6.236 12.454 hybrid contribution -0.363 0.808 0.948 1.298 sum -11.140 1.031 -5.287 12.375 Atomic orbital electron populations 1.21936 0.95402 1.01680 1.01562 1.21076 0.95619 0.96285 0.97304 1.22004 1.01864 0.95798 1.01638 1.20717 0.94329 0.95797 0.95749 1.21925 1.00509 0.95336 1.02320 1.21988 1.00494 1.01077 0.96860 1.21265 0.93715 0.97292 0.87175 1.55681 1.29193 1.76431 1.26464 1.01067 0.72179 0.74418 0.72603 1.93542 1.84608 1.77659 1.39884 1.93439 1.84296 1.71822 1.49417 1.29879 1.24647 1.23517 1.08879 1.20254 0.92477 0.95208 0.94414 1.20485 1.07311 0.98340 1.00932 1.20899 0.97149 0.97272 0.94290 1.21521 0.99958 0.98553 0.97757 1.16994 0.88237 0.88093 0.88440 1.19831 1.07344 1.27237 0.92784 0.89504 1.25944 0.95725 0.91987 1.00398 1.69781 1.19139 1.26713 1.24464 0.86199 0.81225 0.79116 0.79810 1.18693 1.19840 1.17924 0.92362 0.93110 0.92526 0.91099 0.91859 0.93082 0.92149 0.92335 0.92544 0.92527 0.91750 0.92565 0.92353 0.91354 0.91094 0.75620 0.87492 0.88807 0.88886 0.85715 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.49 37.16 0.32 -1.01 16 2 C -0.08 -0.87 2.28 -90.62 -0.21 -1.08 16 3 C -0.16 -1.67 8.49 37.16 0.32 -1.35 16 4 C -0.06 -0.77 0.34 -154.50 -0.05 -0.82 16 5 C -0.14 -1.62 7.95 37.16 0.30 -1.32 16 6 C -0.15 -1.75 7.60 37.16 0.28 -1.47 16 7 C 0.13 1.98 4.73 -4.05 -0.02 1.96 16 8 N -1.12 -19.37 4.47 -10.62 -0.05 -19.42 16 9 S 2.70 59.14 4.96 -107.50 -0.53 58.61 16 10 O -0.97 -24.15 16.53 -57.17 -0.94 -25.10 16 11 O -1.00 -22.86 16.53 -57.17 -0.94 -23.81 16 12 C -0.77 -18.45 5.90 -38.87 -0.23 -18.68 16 13 C 0.00 -0.08 9.53 -39.66 -0.38 -0.46 16 14 C -0.25 -5.47 10.05 -39.29 -0.39 -5.86 16 15 C -0.08 -1.73 10.02 -39.66 -0.40 -2.12 16 16 C -0.16 -3.89 8.66 -38.87 -0.34 -4.22 16 17 C 0.19 4.72 5.55 -106.82 -0.59 4.13 16 18 C -0.44 -11.00 7.63 -37.74 -0.29 -11.29 16 19 H 0.09 2.01 5.82 -52.49 -0.31 1.70 16 20 C 0.08 1.92 5.25 -17.34 -0.09 1.83 16 21 N -0.78 -19.08 10.85 55.55 0.60 -18.48 16 22 Si 0.91 17.90 29.57 -169.99 -5.03 12.87 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 26 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.64 6.43 -51.92 -0.33 0.31 16 33 H 0.06 0.69 7.18 -51.92 -0.37 0.32 16 34 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.80 6.43 -51.93 -0.33 0.46 16 37 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 38 H 0.06 0.73 6.61 -51.93 -0.34 0.39 16 39 H 0.07 1.06 6.43 -51.93 -0.33 0.73 16 40 H 0.07 1.07 7.82 -51.93 -0.41 0.66 16 41 H 0.41 6.42 6.28 -34.48 -0.22 6.21 16 42 H 0.11 2.26 7.32 -52.49 -0.38 1.87 16 43 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.13 3.10 6.21 -52.49 -0.33 2.77 16 46 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -29.74 362.36 -9.91 -39.65 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.70 Total: 11.99 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: -1.78 Total: -41.77 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.56 Total: -37.90 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -1.89 Total: -48.90 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 59.14 SS G_CDS: -0.53 Total: 58.61 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.74 -9.91 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601398988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.513 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds