Wall clock time and date at job start Tue Mar 31 2020 14:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47453 * 2 1 4 4 C 1.52999 * 109.47449 * 120.00814 * 2 1 3 5 5 C 1.53002 * 109.47005 * 59.99289 * 4 2 1 6 6 C 1.53009 * 109.46780 * 299.99881 * 4 2 1 7 7 C 1.52996 * 109.47449 * 179.97438 * 4 2 1 8 8 N 1.46495 * 109.47215 * 180.02562 * 7 4 2 9 9 S 1.65603 * 120.00053 * 165.97830 * 8 7 4 10 10 O 1.42101 * 106.39991 * 176.36711 * 9 8 7 11 11 O 1.42092 * 106.40408 * 309.28739 * 9 8 7 12 12 C 1.76201 * 107.21955 * 62.83012 * 9 8 7 13 13 C 1.37635 * 120.12448 * 245.78615 * 12 9 8 14 14 C 1.38617 * 120.24681 * 179.97438 * 13 12 9 15 15 C 1.38659 * 120.50330 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.24470 * 0.02807 * 15 14 13 17 17 C 1.40693 * 120.13096 * 65.50604 * 12 9 8 18 18 C 1.41403 * 120.24117 * 359.97438 * 17 12 9 19 19 H 1.07998 * 120.00231 * 331.33194 * 18 17 12 20 20 C 1.39946 * 119.99677 * 151.32978 * 18 17 12 21 21 N 1.30830 * 120.00074 * 348.69248 * 20 18 17 22 22 Si 1.86803 * 120.00181 * 168.69509 * 20 18 17 23 23 H 1.48503 * 109.46919 * 89.99484 * 22 20 18 24 24 H 1.48493 * 109.47384 * 209.99900 * 22 20 18 25 25 H 1.48498 * 109.46543 * 329.99966 * 22 20 18 26 26 H 1.09003 * 109.47259 * 299.99760 * 1 2 3 27 27 H 1.08999 * 109.47631 * 59.99198 * 1 2 3 28 28 H 1.09002 * 109.47535 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46746 * 240.00807 * 2 1 3 30 30 H 1.09003 * 109.47492 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47357 * 300.00970 * 3 2 1 32 32 H 1.09008 * 109.46435 * 60.00249 * 3 2 1 33 33 H 1.09008 * 109.46874 * 180.02562 * 5 4 2 34 34 H 1.08998 * 109.47198 * 300.00459 * 5 4 2 35 35 H 1.08996 * 109.47050 * 60.00606 * 5 4 2 36 36 H 1.09004 * 109.46565 * 299.99878 * 6 4 2 37 37 H 1.08998 * 109.47364 * 59.99577 * 6 4 2 38 38 H 1.08999 * 109.46698 * 180.02562 * 6 4 2 39 39 H 1.08995 * 109.47332 * 59.99054 * 7 4 2 40 40 H 1.09006 * 109.46390 * 299.99653 * 7 4 2 41 41 H 0.97002 * 119.99618 * 345.69592 * 8 7 4 42 42 H 1.07995 * 119.87813 * 359.97438 * 13 12 9 43 43 H 1.07999 * 119.75047 * 179.97438 * 14 13 12 44 44 H 1.07990 * 119.87871 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.12627 * 179.97438 * 16 15 14 46 46 H 0.96996 * 119.99817 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.5299 -2.1639 1.2490 6 6 1.5300 -0.0002 2.4985 7 6 3.5700 -0.7220 1.2488 8 7 4.0583 -1.4132 2.4445 9 16 5.6461 -1.8732 2.5446 10 8 5.8211 -2.4317 3.8395 11 8 5.9349 -2.5815 1.3472 12 6 6.6184 -0.4044 2.5008 13 6 7.4556 -0.1618 1.4356 14 6 8.2213 0.9931 1.3983 15 6 8.1540 1.9159 2.4311 16 6 7.3248 1.6934 3.5064 17 6 6.5376 0.5276 3.5516 18 6 5.6762 0.2920 4.6479 19 1 4.7789 -0.2938 4.5135 20 6 5.9864 0.8179 5.9071 21 7 7.1684 1.3338 6.1275 22 14 4.7130 0.7833 7.2734 23 1 4.8469 -0.4798 8.0429 24 1 4.9275 1.9400 8.1795 25 1 3.3524 0.8618 6.6838 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5137 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.8930 -2.6777 2.1392 34 1 0.4399 -2.1638 1.2490 35 1 1.8932 -2.6776 0.3590 36 1 1.8934 1.0275 2.4985 37 1 0.4401 -0.0002 2.4985 38 1 1.8938 -0.5139 3.3884 39 1 3.9337 0.3055 1.2485 40 1 3.9329 -1.2360 0.3587 41 1 3.4526 -1.5979 3.1793 42 1 7.5162 -0.8738 0.6259 43 1 8.8758 1.1753 0.5587 44 1 8.7553 2.8120 2.3918 45 1 7.2742 2.4132 4.3099 46 1 7.3835 1.6980 7.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601398988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:04 Heat of formation + Delta-G solvation = -99.529413 kcal Electronic energy + Delta-G solvation = -27337.721594 eV Core-core repulsion = 23738.326723 eV Total energy + Delta-G solvation = -3599.394871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.02090 -39.36471 -38.00730 -36.65111 -35.70309 -35.27535 -32.05327 -31.59505 -31.34413 -28.82873 -27.95633 -27.34319 -26.21186 -23.43723 -23.06465 -22.88172 -20.32472 -19.50536 -19.17703 -18.42696 -17.85454 -17.22874 -16.91971 -16.21220 -16.00636 -15.88121 -15.30740 -15.17896 -15.08541 -14.89080 -14.47257 -14.42787 -13.82756 -13.67638 -13.32450 -13.26121 -13.11338 -12.98384 -12.93113 -12.86118 -12.82959 -12.77728 -12.62510 -12.54845 -12.44097 -12.14581 -12.09938 -11.91841 -11.65389 -11.28533 -11.19495 -11.18318 -11.12402 -11.07356 -10.14322 -9.83086 -9.42159 -8.78529 -6.60282 -0.13685 0.53991 0.97888 1.35876 1.47831 1.52147 2.15432 2.38742 2.64506 3.00122 3.49086 3.71042 3.84489 3.89401 3.98850 4.31172 4.33845 4.43191 4.50262 4.51942 4.56729 4.71470 4.75169 4.82109 4.89593 4.90724 4.97704 5.01163 5.10279 5.13952 5.15352 5.17346 5.19282 5.25756 5.29482 5.33474 5.39091 5.51509 5.52901 5.66045 5.71366 5.71957 5.83698 6.01097 6.09178 6.25893 6.48493 6.68677 6.84437 8.17264 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.005703 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.179076 B = 4908.298971 C = 5667.741530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.157 4.157 4 C -0.058 4.058 5 C -0.145 4.145 6 C -0.148 4.148 7 C 0.126 3.874 8 N -1.106 6.106 9 S 2.718 3.282 10 O -1.001 7.001 11 O -1.011 7.011 12 C -0.791 4.791 13 C -0.017 4.017 14 C -0.250 4.250 15 C -0.076 4.076 16 C -0.185 4.185 17 C 0.163 3.837 18 C -0.471 4.471 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.809 5.809 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.260 1.260 25 H -0.241 1.241 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.418 0.582 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.115 0.885 46 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 1.322 -7.050 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 C -0.214 4.214 4 C -0.060 4.060 5 C -0.202 4.202 6 C -0.206 4.206 7 C 0.000 4.000 8 N -0.867 5.867 9 S 2.815 3.185 10 O -0.992 6.992 11 O -1.001 7.001 12 C -0.885 4.885 13 C -0.037 4.037 14 C -0.270 4.270 15 C -0.095 4.095 16 C -0.205 4.205 17 C 0.159 3.841 18 C -0.499 4.499 19 H 0.111 0.889 20 C -0.179 4.179 21 N -0.433 5.433 22 Si 0.792 3.208 23 H -0.193 1.193 24 H -0.184 1.184 25 H -0.164 1.164 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.255 0.745 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.133 0.867 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.529 0.572 -6.961 14.344 hybrid contribution 0.245 0.712 1.048 1.290 sum -12.284 1.284 -5.913 13.694 Atomic orbital electron populations 1.21906 0.93706 1.02373 1.02200 1.21071 0.96936 0.95677 0.96348 1.22006 1.00781 0.96325 1.02256 1.20701 0.91759 0.96758 0.96777 1.21953 1.01920 0.94460 1.01900 1.22011 1.01879 1.00373 0.96287 1.21493 0.96224 0.96418 0.85878 1.55290 1.27403 1.76380 1.27674 1.00367 0.72894 0.73734 0.71549 1.93486 1.85668 1.78431 1.41582 1.93415 1.85044 1.72066 1.49569 1.30162 1.25560 1.23793 1.08967 1.20571 0.92472 0.96074 0.94599 1.20880 1.06979 0.97581 1.01564 1.21243 0.96436 0.98320 0.93486 1.21584 1.01561 0.98715 0.98657 1.17300 0.88919 0.88708 0.89201 1.20122 1.07913 1.28390 0.93506 0.88872 1.26804 0.97464 0.91309 1.02343 1.69822 1.20573 1.27436 1.25487 0.85331 0.79416 0.79116 0.76971 1.19291 1.18362 1.16380 0.92127 0.92123 0.91783 0.90928 0.93560 0.91761 0.92256 0.93171 0.90379 0.92590 0.92554 0.90405 0.93338 0.92140 0.91239 0.74543 0.86146 0.85569 0.86036 0.86732 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.49 71.98 0.61 -1.54 16 2 C -0.08 -1.54 2.28 -10.80 -0.02 -1.56 16 3 C -0.16 -3.15 8.49 71.98 0.61 -2.54 16 4 C -0.06 -1.31 0.34 -52.18 -0.02 -1.33 16 5 C -0.15 -2.99 7.95 71.98 0.57 -2.42 16 6 C -0.15 -3.31 7.60 71.99 0.55 -2.76 16 7 C 0.13 3.73 4.73 86.38 0.41 4.14 16 8 N -1.11 -38.32 4.47 -187.50 -0.84 -39.16 16 9 S 2.72 120.49 4.96 -56.49 -0.28 120.21 16 10 O -1.00 -51.04 16.53 -128.00 -2.12 -53.16 16 11 O -1.01 -46.27 16.53 -128.00 -2.12 -48.38 16 12 C -0.79 -38.20 5.90 22.73 0.13 -38.07 16 13 C -0.02 -0.79 9.53 22.22 0.21 -0.58 16 14 C -0.25 -10.59 10.05 22.46 0.23 -10.37 16 15 C -0.08 -3.36 10.02 22.22 0.22 -3.14 16 16 C -0.19 -9.27 8.66 22.73 0.20 -9.07 16 17 C 0.16 8.42 5.55 -21.29 -0.12 8.30 16 18 C -0.47 -23.85 7.63 23.46 0.18 -23.67 16 19 H 0.09 4.39 5.82 -2.91 -0.02 4.37 16 20 C 0.04 1.86 5.25 85.26 0.45 2.31 16 21 N -0.81 -40.50 10.85 21.83 0.24 -40.26 16 22 Si 0.97 36.45 29.57 68.60 2.03 38.48 16 23 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 24 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 25 H -0.24 -8.36 7.11 99.48 0.71 -7.65 16 26 H 0.06 0.88 6.43 -2.39 -0.02 0.87 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.87 6.43 -2.39 -0.02 0.85 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.07 6.43 -2.39 -0.02 1.06 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.19 6.43 -2.38 -0.02 1.18 16 33 H 0.05 1.11 7.18 -2.38 -0.02 1.09 16 34 H 0.08 1.27 6.43 -2.39 -0.02 1.26 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.34 6.43 -2.38 -0.02 1.33 16 37 H 0.08 1.39 6.43 -2.39 -0.02 1.37 16 38 H 0.05 1.16 6.61 -2.39 -0.02 1.15 16 39 H 0.06 1.90 6.43 -2.39 -0.02 1.89 16 40 H 0.07 2.08 7.82 -2.38 -0.02 2.06 16 41 H 0.42 13.09 6.28 -96.74 -0.61 12.48 16 42 H 0.12 5.00 7.32 -2.91 -0.02 4.98 16 43 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 44 H 0.12 4.54 8.06 -2.92 -0.02 4.52 16 45 H 0.11 5.86 6.21 -2.91 -0.02 5.85 16 46 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 Total: -1.00 -64.05 362.36 1.51 -62.53 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: 0.39 Total: 42.03 kcal Atomic # 6 Polarization: -86.50 SS G_CDS: 4.21 Total: -82.29 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -0.60 Total: -79.42 kcal Atomic # 8 Polarization: -97.31 SS G_CDS: -4.23 Total: -101.54 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 16 Polarization: 120.49 SS G_CDS: -0.28 Total: 120.21 kcal Total: -64.05 1.51 -62.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601398988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.995 kcal (2) G-P(sol) polarization free energy of solvation -64.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds