Wall clock time and date at job start Tue Mar 31 2020 14:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47507 * 2 1 4 4 C 1.53004 * 109.47315 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46904 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47449 * 54.99564 * 5 4 3 7 7 C 1.53010 * 109.46834 * 174.99911 * 5 4 3 8 8 N 1.46501 * 109.46886 * 294.99442 * 5 4 3 9 9 C 1.46497 * 120.00050 * 294.11957 * 8 5 4 10 10 S 1.65595 * 119.99833 * 114.12219 * 8 5 4 11 11 O 1.42094 * 106.40485 * 342.55903 * 10 8 5 12 12 O 1.42105 * 106.40032 * 209.63737 * 10 8 5 13 13 C 1.76204 * 107.21924 * 96.09810 * 10 8 5 14 14 C 1.37637 * 120.12878 * 112.81385 * 13 10 8 15 15 C 1.38610 * 120.25054 * 179.97438 * 14 13 10 16 16 C 1.38653 * 120.50076 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.25013 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12717 * 292.79402 * 13 10 8 19 19 C 1.41394 * 120.24065 * 0.02562 * 18 13 10 20 20 H 1.07993 * 120.00107 * 327.87411 * 19 18 13 21 21 C 1.39948 * 119.99740 * 147.87947 * 19 18 13 22 22 N 1.30821 * 120.00261 * 165.90495 * 21 19 18 23 23 Si 1.86805 * 119.99816 * 345.89490 * 21 19 18 24 24 H 1.48505 * 109.46684 * 86.93835 * 23 21 19 25 25 H 1.48497 * 109.47011 * 206.93415 * 23 21 19 26 26 H 1.48497 * 109.47470 * 326.93553 * 23 21 19 27 27 H 1.08995 * 109.47501 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46727 * 300.00524 * 1 2 3 29 29 H 1.08994 * 109.46953 * 59.99573 * 1 2 3 30 30 H 1.09007 * 109.47343 * 239.99895 * 2 1 3 31 31 H 1.08999 * 109.47256 * 120.00079 * 2 1 3 32 32 H 1.08998 * 109.47317 * 60.00337 * 3 2 1 33 33 H 1.09006 * 109.47068 * 299.99895 * 3 2 1 34 34 H 1.08994 * 109.47416 * 59.99783 * 4 3 2 35 35 H 1.09006 * 109.46682 * 299.99783 * 4 3 2 36 36 H 1.09002 * 109.46894 * 59.99581 * 7 5 4 37 37 H 1.09001 * 109.46823 * 179.97438 * 7 5 4 38 38 H 1.08999 * 109.46815 * 299.99863 * 7 5 4 39 39 H 1.09003 * 109.47517 * 269.99948 * 9 8 5 40 40 H 1.09003 * 109.47457 * 30.00502 * 9 8 5 41 41 H 1.09000 * 109.47377 * 149.99878 * 9 8 5 42 42 H 1.08004 * 119.87387 * 359.97438 * 14 13 10 43 43 H 1.07996 * 119.75295 * 180.27987 * 15 14 13 44 44 H 1.08000 * 119.87732 * 179.97438 * 16 15 14 45 45 H 1.08001 * 120.12944 * 180.02562 * 17 16 15 46 46 H 0.97001 * 120.00368 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4235 0.8422 7 6 5.6050 2.8866 0.1251 8 7 3.6921 3.5406 -1.2513 9 6 4.2555 3.0824 -2.5237 10 16 2.6166 4.7996 -1.2275 11 8 1.9568 4.7400 0.0295 12 8 1.9274 4.7621 -2.4697 13 6 3.5576 6.2893 -1.2253 14 6 3.5234 7.1296 -2.3149 15 6 4.2622 8.3024 -2.3156 16 6 5.0433 8.6428 -1.2218 17 6 5.0927 7.8178 -0.1217 18 6 4.3464 6.6247 -0.1096 19 6 4.3894 5.7691 1.0153 20 1 3.5204 5.1873 1.2846 21 6 5.5580 5.6763 1.7796 22 7 5.5246 5.1135 2.9601 23 14 7.1658 6.3557 1.1139 24 1 7.2742 7.7964 1.4575 25 1 8.3033 5.6160 1.7172 26 1 7.1979 6.1950 -0.3620 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9284 0.8892 36 1 6.0393 2.3480 -0.7172 37 1 5.9684 3.9143 0.1251 38 1 5.8937 2.3987 1.0561 39 1 5.1734 3.6316 -2.7333 40 1 4.4759 2.0168 -2.4608 41 1 3.5363 3.2580 -3.3237 42 1 2.9187 6.8742 -3.1725 43 1 4.2259 8.9581 -3.1730 44 1 5.6153 9.5589 -1.2334 45 1 5.7015 8.0851 0.7294 46 1 6.3346 5.0495 3.4900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601415214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:08 Heat of formation + Delta-G solvation = -74.009594 kcal Electronic energy + Delta-G solvation = -27929.610284 eV Core-core repulsion = 24331.322035 eV Total energy + Delta-G solvation = -3598.288249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -37.94532 -37.55095 -36.34378 -34.89206 -34.60581 -33.85625 -31.07130 -30.72768 -30.11421 -28.44749 -25.92173 -25.40644 -23.72000 -22.04358 -21.19283 -20.84117 -20.15772 -18.10759 -17.66955 -17.31092 -16.44631 -15.52679 -15.45981 -15.03002 -14.37750 -14.19869 -13.94308 -13.82551 -13.61403 -13.50796 -13.09809 -12.89376 -12.62312 -12.40281 -12.19897 -12.04761 -11.96126 -11.87906 -11.71316 -11.33005 -11.22327 -11.18606 -11.03422 -10.95744 -10.85547 -10.72145 -10.61181 -10.46073 -10.24024 -10.15915 -9.99817 -9.96157 -9.45558 -9.24354 -8.38321 -8.20366 -7.84405 -7.20017 -4.88011 1.45662 2.06893 2.49779 2.91356 2.99650 3.09842 3.72297 3.83610 4.23355 4.68794 4.96506 5.07733 5.16503 5.24775 5.32136 5.47043 5.59173 5.65670 5.74305 5.81067 5.89578 5.91454 5.96537 5.98568 6.05883 6.10559 6.14205 6.16131 6.19161 6.26671 6.32955 6.34264 6.39645 6.46759 6.53503 6.62247 6.68700 6.91008 6.94013 7.00053 7.07958 7.20818 7.37712 7.44419 7.55377 7.82893 8.15282 8.31673 8.52503 9.77045 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.006376 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.811079 B = 4390.472269 C = 5521.252124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.124 4.124 4 C -0.126 4.126 5 C 0.149 3.851 6 H 0.120 0.880 7 C -0.155 4.155 8 N -0.989 5.989 9 C 0.090 3.910 10 S 2.703 3.297 11 O -0.963 6.963 12 O -0.996 6.996 13 C -0.771 4.771 14 C 0.016 3.984 15 C -0.259 4.259 16 C -0.044 4.044 17 C -0.241 4.241 18 C 0.166 3.834 19 C -0.460 4.460 20 H 0.134 0.866 21 C 0.096 3.904 22 N -0.776 5.776 23 Si 0.900 3.100 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.244 1.244 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 -6.863 -4.565 8.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.162 4.162 4 C -0.165 4.165 5 C 0.044 3.956 6 H 0.138 0.862 7 C -0.214 4.214 8 N -0.826 5.826 9 C -0.056 4.056 10 S 2.800 3.200 11 O -0.954 6.954 12 O -0.987 6.987 13 C -0.864 4.864 14 C -0.004 4.004 15 C -0.279 4.279 16 C -0.063 4.063 17 C -0.261 4.261 18 C 0.161 3.839 19 C -0.487 4.487 20 H 0.152 0.848 21 C -0.128 4.128 22 N -0.397 5.397 23 Si 0.726 3.274 24 H -0.192 1.192 25 H -0.212 1.212 26 H -0.167 1.167 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.128 0.872 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.250 -7.131 -4.288 8.324 hybrid contribution 1.611 0.968 -0.172 1.887 sum 1.860 -6.162 -4.459 7.831 Atomic orbital electron populations 1.21794 0.96269 1.00982 1.02127 1.21517 0.95622 0.97316 1.01439 1.21654 0.95645 0.96134 1.02747 1.21973 0.95600 0.97223 1.01739 1.21019 0.95596 0.92641 0.86348 0.86241 1.22111 0.95558 1.03149 1.00544 1.57368 1.64055 1.49397 1.11746 1.21372 0.98913 1.00377 0.84979 1.01113 0.73242 0.73109 0.72500 1.93494 1.72453 1.86748 1.42695 1.93432 1.71887 1.87567 1.45827 1.30050 1.30073 1.23102 1.03199 1.20404 0.92904 0.92556 0.94540 1.20512 1.06954 1.00502 0.99951 1.20848 0.95268 0.96963 0.93210 1.21385 1.07940 0.97394 0.99362 1.17095 0.86858 0.90415 0.89526 1.20433 1.01313 1.21506 1.05436 0.84833 1.26122 1.01268 0.92332 0.93045 1.69651 1.31500 1.30837 1.07709 0.86587 0.79695 0.79115 0.82005 1.19169 1.21246 1.16706 0.93228 0.92570 0.92790 0.92496 0.92230 0.90929 0.92656 0.92123 0.91261 0.93591 0.91041 0.92322 0.93313 0.91339 0.90839 0.86964 0.88137 0.88333 0.87244 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.15 0.37 -1.45 16 2 C -0.12 -1.50 5.93 -26.73 -0.16 -1.66 16 3 C -0.12 -1.90 5.10 -26.73 -0.14 -2.03 16 4 C -0.13 -1.85 4.70 -26.73 -0.13 -1.98 16 5 C 0.15 2.66 1.69 -67.92 -0.11 2.54 16 6 H 0.12 2.49 4.80 -51.93 -0.25 2.24 16 7 C -0.15 -2.64 8.71 37.16 0.32 -2.31 16 8 N -0.99 -18.12 2.52 -114.60 -0.29 -18.41 16 9 C 0.09 1.35 9.53 59.85 0.57 1.92 16 10 S 2.70 58.79 5.12 -107.50 -0.55 58.24 16 11 O -0.96 -23.10 14.27 -57.17 -0.82 -23.91 16 12 O -1.00 -22.31 15.70 -57.17 -0.90 -23.21 16 13 C -0.77 -17.84 5.97 -38.87 -0.23 -18.07 16 14 C 0.02 0.34 9.53 -39.66 -0.38 -0.04 16 15 C -0.26 -5.30 10.05 -39.29 -0.39 -5.70 16 16 C -0.04 -0.92 10.02 -39.66 -0.40 -1.32 16 17 C -0.24 -5.57 7.24 -38.87 -0.28 -5.85 16 18 C 0.17 4.02 5.08 -106.82 -0.54 3.48 16 19 C -0.46 -11.26 6.32 -37.74 -0.24 -11.50 16 20 H 0.13 3.49 4.21 -52.49 -0.22 3.27 16 21 C 0.10 2.21 4.19 -17.34 -0.07 2.14 16 22 N -0.78 -18.02 13.93 55.55 0.77 -17.25 16 23 Si 0.90 18.82 23.20 -169.99 -3.94 14.88 16 24 H -0.27 -5.48 6.36 56.52 0.36 -5.12 16 25 H -0.29 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.24 -5.23 7.06 56.52 0.40 -4.83 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 34 H 0.06 0.79 6.76 -51.93 -0.35 0.44 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.66 7.51 -51.93 -0.39 0.27 16 37 H 0.07 1.38 4.51 -51.93 -0.23 1.14 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.85 6.64 -51.93 -0.34 0.50 16 41 H 0.07 1.09 7.08 -51.93 -0.37 0.72 16 42 H 0.11 2.23 7.32 -52.48 -0.38 1.85 16 43 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 44 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.11 2.47 4.51 -52.49 -0.24 2.23 16 46 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -27.40 358.06 -9.15 -36.56 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.01 Total: 9.55 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: -1.81 Total: -41.84 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.48 Total: -35.66 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -1.71 Total: -47.12 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -3.94 Total: 14.88 kcal Atomic # 16 Polarization: 58.79 SS G_CDS: -0.55 Total: 58.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.40 -9.15 -36.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.454 kcal (2) G-P(sol) polarization free energy of solvation -27.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds