Wall clock time and date at job start Tue Mar 31 2020 14:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47507 * 2 1 4 4 C 1.53004 * 109.47315 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46904 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47449 * 54.99564 * 5 4 3 7 7 C 1.53010 * 109.46834 * 174.99911 * 5 4 3 8 8 N 1.46501 * 109.46886 * 294.99442 * 5 4 3 9 9 C 1.46497 * 120.00050 * 294.11957 * 8 5 4 10 10 S 1.65595 * 119.99833 * 114.12219 * 8 5 4 11 11 O 1.42094 * 106.40485 * 342.55903 * 10 8 5 12 12 O 1.42105 * 106.40032 * 209.63737 * 10 8 5 13 13 C 1.76204 * 107.21924 * 96.09810 * 10 8 5 14 14 C 1.37637 * 120.12878 * 112.81385 * 13 10 8 15 15 C 1.38610 * 120.25054 * 179.97438 * 14 13 10 16 16 C 1.38653 * 120.50076 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.25013 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12717 * 292.79402 * 13 10 8 19 19 C 1.41394 * 120.24065 * 0.02562 * 18 13 10 20 20 H 1.07993 * 120.00107 * 327.87411 * 19 18 13 21 21 C 1.39948 * 119.99740 * 147.87947 * 19 18 13 22 22 N 1.30821 * 120.00261 * 165.90495 * 21 19 18 23 23 Si 1.86805 * 119.99816 * 345.89490 * 21 19 18 24 24 H 1.48505 * 109.46684 * 86.93835 * 23 21 19 25 25 H 1.48497 * 109.47011 * 206.93415 * 23 21 19 26 26 H 1.48497 * 109.47470 * 326.93553 * 23 21 19 27 27 H 1.08995 * 109.47501 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46727 * 300.00524 * 1 2 3 29 29 H 1.08994 * 109.46953 * 59.99573 * 1 2 3 30 30 H 1.09007 * 109.47343 * 239.99895 * 2 1 3 31 31 H 1.08999 * 109.47256 * 120.00079 * 2 1 3 32 32 H 1.08998 * 109.47317 * 60.00337 * 3 2 1 33 33 H 1.09006 * 109.47068 * 299.99895 * 3 2 1 34 34 H 1.08994 * 109.47416 * 59.99783 * 4 3 2 35 35 H 1.09006 * 109.46682 * 299.99783 * 4 3 2 36 36 H 1.09002 * 109.46894 * 59.99581 * 7 5 4 37 37 H 1.09001 * 109.46823 * 179.97438 * 7 5 4 38 38 H 1.08999 * 109.46815 * 299.99863 * 7 5 4 39 39 H 1.09003 * 109.47517 * 269.99948 * 9 8 5 40 40 H 1.09003 * 109.47457 * 30.00502 * 9 8 5 41 41 H 1.09000 * 109.47377 * 149.99878 * 9 8 5 42 42 H 1.08004 * 119.87387 * 359.97438 * 14 13 10 43 43 H 1.07996 * 119.75295 * 180.27987 * 15 14 13 44 44 H 1.08000 * 119.87732 * 179.97438 * 16 15 14 45 45 H 1.08001 * 120.12944 * 180.02562 * 17 16 15 46 46 H 0.97001 * 120.00368 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4235 0.8422 7 6 5.6050 2.8866 0.1251 8 7 3.6921 3.5406 -1.2513 9 6 4.2555 3.0824 -2.5237 10 16 2.6166 4.7996 -1.2275 11 8 1.9568 4.7400 0.0295 12 8 1.9274 4.7621 -2.4697 13 6 3.5576 6.2893 -1.2253 14 6 3.5234 7.1296 -2.3149 15 6 4.2622 8.3024 -2.3156 16 6 5.0433 8.6428 -1.2218 17 6 5.0927 7.8178 -0.1217 18 6 4.3464 6.6247 -0.1096 19 6 4.3894 5.7691 1.0153 20 1 3.5204 5.1873 1.2846 21 6 5.5580 5.6763 1.7796 22 7 5.5246 5.1135 2.9601 23 14 7.1658 6.3557 1.1139 24 1 7.2742 7.7964 1.4575 25 1 8.3033 5.6160 1.7172 26 1 7.1979 6.1950 -0.3620 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9284 0.8892 36 1 6.0393 2.3480 -0.7172 37 1 5.9684 3.9143 0.1251 38 1 5.8937 2.3987 1.0561 39 1 5.1734 3.6316 -2.7333 40 1 4.4759 2.0168 -2.4608 41 1 3.5363 3.2580 -3.3237 42 1 2.9187 6.8742 -3.1725 43 1 4.2259 8.9581 -3.1730 44 1 5.6153 9.5589 -1.2334 45 1 5.7015 8.0851 0.7294 46 1 6.3346 5.0495 3.4900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601415214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:07 Heat of formation + Delta-G solvation = -89.914404 kcal Electronic energy + Delta-G solvation = -27930.299969 eV Core-core repulsion = 24331.322035 eV Total energy + Delta-G solvation = -3598.977933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.62548 -38.93099 -38.08474 -36.67690 -35.82837 -35.51869 -32.48096 -32.31661 -31.80945 -29.64489 -27.26939 -27.10750 -24.88261 -23.73356 -22.91289 -21.96590 -21.53722 -19.74271 -19.36322 -18.91106 -18.10158 -17.14864 -17.00485 -16.33222 -15.97156 -15.76433 -15.42249 -15.27119 -15.02298 -15.00622 -14.60620 -14.31670 -14.04968 -13.80452 -13.60820 -13.48332 -13.38815 -13.20412 -13.08900 -12.98962 -12.94722 -12.78826 -12.55076 -12.46786 -12.21312 -12.12513 -12.00253 -11.88341 -11.69366 -11.43100 -11.39992 -11.33683 -11.16341 -10.93918 -9.99547 -9.69734 -9.57769 -8.94117 -6.67660 -0.20163 0.34890 0.77465 1.23440 1.33614 1.42735 2.04902 2.26511 2.52014 2.97897 3.33745 3.65971 3.78448 4.08185 4.18190 4.18985 4.20821 4.29701 4.40556 4.49011 4.55839 4.60856 4.69003 4.70308 4.77000 4.86660 4.87088 4.92405 4.95334 5.00303 5.03005 5.07871 5.15654 5.18363 5.23802 5.31294 5.38653 5.39126 5.51380 5.55306 5.56234 5.64315 5.72605 5.83555 5.99186 6.11954 6.33816 6.56494 6.73266 8.08275 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.006376 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.811079 B = 4390.472269 C = 5521.252124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.126 4.126 4 C -0.119 4.119 5 C 0.148 3.852 6 H 0.081 0.919 7 C -0.152 4.152 8 N -0.984 5.984 9 C 0.081 3.919 10 S 2.710 3.290 11 O -0.996 6.996 12 O -1.008 7.008 13 C -0.789 4.789 14 C 0.000 4.000 15 C -0.252 4.252 16 C -0.043 4.043 17 C -0.266 4.266 18 C 0.149 3.851 19 C -0.478 4.478 20 H 0.106 0.894 21 C 0.079 3.921 22 N -0.803 5.803 23 Si 0.938 3.062 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.253 1.253 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.110 0.890 46 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 -7.507 -6.318 10.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.164 4.164 4 C -0.158 4.158 5 C 0.042 3.958 6 H 0.099 0.901 7 C -0.210 4.210 8 N -0.823 5.823 9 C -0.064 4.064 10 S 2.807 3.193 11 O -0.986 6.986 12 O -0.998 6.998 13 C -0.882 4.882 14 C -0.020 4.020 15 C -0.272 4.272 16 C -0.061 4.061 17 C -0.286 4.286 18 C 0.144 3.856 19 C -0.505 4.505 20 H 0.124 0.876 21 C -0.142 4.142 22 N -0.426 5.426 23 Si 0.762 3.238 24 H -0.187 1.187 25 H -0.195 1.195 26 H -0.177 1.177 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.144 0.856 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.128 0.872 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.811 -7.764 -6.039 10.002 hybrid contribution 1.054 1.212 0.291 1.632 sum 2.865 -6.552 -5.748 9.175 Atomic orbital electron populations 1.21823 0.96106 1.02182 1.01329 1.21495 0.95819 0.95204 1.02843 1.21650 0.96316 0.97846 1.00561 1.21942 0.94945 0.95246 1.03637 1.21004 0.96055 0.93815 0.84888 0.90083 1.22076 0.94861 1.02076 1.02024 1.57123 1.63767 1.48158 1.13207 1.21665 0.98993 1.02494 0.83263 1.00701 0.73551 0.73444 0.71558 1.93452 1.73796 1.87242 1.44118 1.93401 1.72610 1.87882 1.45932 1.30331 1.29946 1.24323 1.03600 1.20738 0.93549 0.93053 0.94620 1.20985 1.05276 1.00082 1.00834 1.21287 0.94873 0.97669 0.92262 1.21541 1.08749 0.97693 1.00586 1.17291 0.87624 0.90963 0.89703 1.20273 1.01263 1.22343 1.06670 0.87607 1.26478 1.02638 0.92188 0.92900 1.69657 1.32622 1.31835 1.08453 0.86002 0.77768 0.79070 0.80991 1.18713 1.19525 1.17657 0.90980 0.93541 0.93528 0.90739 0.91028 0.93729 0.94412 0.89438 0.89899 0.90656 0.93500 0.91916 0.92661 0.87978 0.90757 0.85569 0.84497 0.84647 0.87236 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.91 71.98 0.71 -2.86 16 2 C -0.12 -2.70 5.93 30.59 0.18 -2.52 16 3 C -0.13 -3.87 5.10 30.60 0.16 -3.71 16 4 C -0.12 -3.34 4.70 30.60 0.14 -3.20 16 5 C 0.15 5.29 1.69 44.99 0.08 5.36 16 6 H 0.08 3.59 4.80 -2.39 -0.01 3.58 16 7 C -0.15 -5.04 8.71 71.99 0.63 -4.41 16 8 N -0.98 -35.97 2.52 -516.49 -1.30 -37.28 16 9 C 0.08 2.28 9.53 127.77 1.22 3.49 16 10 S 2.71 121.09 5.12 -56.49 -0.29 120.80 16 11 O -1.00 -50.67 14.27 -128.00 -1.83 -52.50 16 12 O -1.01 -45.57 15.70 -128.00 -2.01 -47.58 16 13 C -0.79 -36.91 5.97 22.73 0.14 -36.77 16 14 C 0.00 0.00 9.53 22.22 0.21 0.21 16 15 C -0.25 -9.63 10.05 22.46 0.23 -9.40 16 16 C -0.04 -1.67 10.02 22.22 0.22 -1.45 16 17 C -0.27 -12.12 7.24 22.73 0.16 -11.95 16 18 C 0.15 7.33 5.08 -21.29 -0.11 7.22 16 19 C -0.48 -24.32 6.32 23.46 0.15 -24.17 16 20 H 0.11 5.93 4.21 -2.91 -0.01 5.92 16 21 C 0.08 3.74 4.19 85.26 0.36 4.09 16 22 N -0.80 -38.30 13.93 21.83 0.30 -38.00 16 23 Si 0.94 38.25 23.20 68.60 1.59 39.84 16 24 H -0.26 -10.36 6.36 99.48 0.63 -9.73 16 25 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 26 H -0.25 -10.59 7.06 99.48 0.70 -9.89 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.04 1.26 7.75 -2.38 -0.02 1.24 16 34 H 0.09 1.99 6.76 -2.39 -0.02 1.98 16 35 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.07 1.99 7.51 -2.39 -0.02 1.98 16 37 H 0.05 1.80 4.51 -2.39 -0.01 1.79 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.10 2.18 6.64 -2.39 -0.02 2.17 16 41 H 0.07 2.09 7.08 -2.39 -0.02 2.08 16 42 H 0.13 4.87 7.32 -2.91 -0.02 4.85 16 43 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 44 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 45 H 0.11 4.88 4.51 -2.91 -0.01 4.87 16 46 H 0.30 12.79 8.30 -92.71 -0.77 12.03 16 Total: -1.00 -61.25 358.06 1.84 -59.41 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.90 Total: 35.37 kcal Atomic # 6 Polarization: -84.54 SS G_CDS: 4.47 Total: -80.06 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.00 Total: -75.27 kcal Atomic # 8 Polarization: -96.24 SS G_CDS: -3.84 Total: -100.08 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 1.59 Total: 39.84 kcal Atomic # 16 Polarization: 121.09 SS G_CDS: -0.29 Total: 120.80 kcal Total: -61.25 1.84 -59.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.503 kcal (2) G-P(sol) polarization free energy of solvation -61.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds