Wall clock time and date at job start Tue Mar 31 2020 14:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47033 * 2 1 4 4 C 1.53003 * 109.46806 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46806 * 179.97438 * 4 3 2 6 6 H 1.08991 * 109.47582 * 305.00575 * 5 4 3 7 7 C 1.52998 * 109.47409 * 184.99771 * 5 4 3 8 8 N 1.46508 * 109.46938 * 65.00260 * 5 4 3 9 9 C 1.46507 * 119.99915 * 65.22882 * 8 5 4 10 10 S 1.65603 * 120.00071 * 245.22810 * 8 5 4 11 11 O 1.42097 * 106.39981 * 150.34479 * 10 8 5 12 12 O 1.42100 * 106.40018 * 17.42543 * 10 8 5 13 13 C 1.76200 * 107.21826 * 263.88429 * 10 8 5 14 14 C 1.37637 * 120.12898 * 246.86414 * 13 10 8 15 15 C 1.38612 * 120.24777 * 180.31688 * 14 13 10 16 16 C 1.38664 * 120.50152 * 359.67871 * 15 14 13 17 17 C 1.37598 * 120.24457 * 359.97438 * 16 15 14 18 18 C 1.40697 * 120.12554 * 66.55995 * 13 10 8 19 19 C 1.41393 * 120.24692 * 359.97438 * 18 13 10 20 20 H 1.08001 * 119.99827 * 29.41070 * 19 18 13 21 21 C 1.39945 * 120.00446 * 209.41235 * 19 18 13 22 22 N 1.30822 * 120.00483 * 197.25527 * 21 19 18 23 23 Si 1.86807 * 119.99809 * 17.24827 * 21 19 18 24 24 H 1.48495 * 109.47087 * 266.57038 * 23 21 19 25 25 H 1.48504 * 109.46886 * 26.56816 * 23 21 19 26 26 H 1.48497 * 109.47083 * 146.56338 * 23 21 19 27 27 H 1.09006 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47354 * 299.99512 * 1 2 3 29 29 H 1.08994 * 109.47520 * 59.99601 * 1 2 3 30 30 H 1.09003 * 109.46884 * 240.00342 * 2 1 3 31 31 H 1.09003 * 109.47325 * 120.00449 * 2 1 3 32 32 H 1.09003 * 109.47006 * 60.00417 * 3 2 1 33 33 H 1.08994 * 109.47293 * 300.00537 * 3 2 1 34 34 H 1.08994 * 109.46897 * 60.00516 * 4 3 2 35 35 H 1.09001 * 109.46963 * 299.99898 * 4 3 2 36 36 H 1.08993 * 109.47546 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.47177 * 300.00948 * 7 5 4 38 38 H 1.09005 * 109.46772 * 59.99996 * 7 5 4 39 39 H 1.08998 * 109.46421 * 274.67457 * 9 8 5 40 40 H 1.08991 * 109.46975 * 34.67894 * 9 8 5 41 41 H 1.09003 * 109.46887 * 154.67839 * 9 8 5 42 42 H 1.07998 * 119.87397 * 0.02562 * 14 13 10 43 43 H 1.08000 * 119.75054 * 179.69402 * 15 14 13 44 44 H 1.07995 * 119.87477 * 180.02562 * 16 15 14 45 45 H 1.08006 * 120.12184 * 180.02562 * 17 16 15 46 46 H 0.96995 * 120.00396 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0799 2.8850 -0.0013 6 1 3.6450 3.4238 -0.8429 7 6 5.6047 2.8869 -0.1276 8 7 3.6929 3.5403 1.2506 9 6 4.2464 3.0725 2.5239 10 16 2.6298 4.8098 1.2264 11 8 1.9347 4.7746 2.4653 12 8 1.9750 4.7608 -0.0338 13 6 3.5851 6.2903 1.2337 14 6 3.5490 7.1304 2.3233 15 6 4.2945 8.2990 2.3289 16 6 5.0890 8.6323 1.2425 17 6 5.1459 7.8037 0.1454 18 6 4.3927 6.6151 0.1283 19 6 4.4431 5.7562 -0.9938 20 1 3.5867 5.1491 -1.2480 21 6 5.6025 5.6926 -1.7749 22 7 5.5538 5.1797 -2.9774 23 14 7.2197 6.3402 -1.1004 24 1 7.4007 7.7530 -1.5202 25 1 7.2041 6.2624 0.3825 26 1 8.3397 5.5198 -1.6273 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9328 0.9288 -0.8909 35 1 3.9336 0.9285 0.8891 36 1 5.9681 3.9144 -0.1276 37 1 6.0397 2.3480 0.7141 38 1 5.8927 2.3992 -1.0590 39 1 3.6450 2.2445 2.8990 40 1 5.2724 2.7372 2.3727 41 1 4.2335 3.8879 3.2471 42 1 2.9340 6.8805 3.1751 43 1 4.2563 8.9549 3.1861 44 1 5.6660 9.5451 1.2578 45 1 5.7657 8.0650 -0.6996 46 1 6.3574 5.1360 -3.5189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601415215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:11 Heat of formation + Delta-G solvation = -74.017374 kcal Electronic energy + Delta-G solvation = -27914.001087 eV Core-core repulsion = 24315.712501 eV Total energy + Delta-G solvation = -3598.288586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -37.95060 -37.55197 -36.33300 -34.88676 -34.61875 -33.88790 -31.07652 -30.73955 -30.10676 -28.45914 -25.97528 -25.41765 -23.69717 -22.04341 -21.20238 -20.83526 -20.17487 -18.13041 -17.67196 -17.28964 -16.44391 -15.51460 -15.46497 -15.04824 -14.38466 -14.22305 -13.92969 -13.79417 -13.62700 -13.47092 -13.21303 -12.91615 -12.68136 -12.40300 -12.19802 -12.02361 -11.97811 -11.78550 -11.69454 -11.34328 -11.21862 -11.17991 -11.08704 -10.97469 -10.85520 -10.71881 -10.62208 -10.50151 -10.23281 -10.15710 -10.02518 -9.93903 -9.44607 -9.28308 -8.40027 -8.20004 -7.85646 -7.23909 -4.89098 1.45692 2.07468 2.50708 2.90195 2.98937 3.09574 3.71325 3.83581 4.21102 4.69978 4.96200 5.08312 5.15956 5.24520 5.31820 5.45311 5.58128 5.63544 5.74160 5.81509 5.87414 5.90216 5.94832 5.98767 6.08237 6.10671 6.12461 6.14962 6.20047 6.21998 6.32531 6.34762 6.39323 6.44637 6.53414 6.61224 6.68777 6.89518 6.93127 6.98622 7.08737 7.20989 7.37126 7.44051 7.55471 7.82482 8.11987 8.31125 8.50611 9.72753 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.006348 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.610490 B = 4409.884302 C = 5546.295237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.124 4.124 4 C -0.125 4.125 5 C 0.149 3.851 6 H 0.119 0.881 7 C -0.158 4.158 8 N -0.990 5.990 9 C 0.098 3.902 10 S 2.701 3.299 11 O -0.995 6.995 12 O -0.964 6.964 13 C -0.773 4.773 14 C 0.016 3.984 15 C -0.261 4.261 16 C -0.044 4.044 17 C -0.238 4.238 18 C 0.165 3.835 19 C -0.456 4.456 20 H 0.134 0.866 21 C 0.096 3.904 22 N -0.771 5.771 23 Si 0.898 3.102 24 H -0.267 1.267 25 H -0.241 1.241 26 H -0.284 1.284 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 -6.922 4.457 8.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.162 4.162 4 C -0.164 4.164 5 C 0.044 3.956 6 H 0.137 0.863 7 C -0.217 4.217 8 N -0.826 5.826 9 C -0.048 4.048 10 S 2.799 3.201 11 O -0.986 6.986 12 O -0.955 6.955 13 C -0.867 4.867 14 C -0.003 4.003 15 C -0.281 4.281 16 C -0.063 4.063 17 C -0.257 4.257 18 C 0.159 3.841 19 C -0.483 4.483 20 H 0.151 0.849 21 C -0.128 4.128 22 N -0.392 5.392 23 Si 0.724 3.276 24 H -0.194 1.194 25 H -0.164 1.164 26 H -0.211 1.211 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.124 0.876 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.396 -7.170 4.169 8.304 hybrid contribution 1.594 0.946 0.161 1.861 sum 1.990 -6.224 4.331 7.839 Atomic orbital electron populations 1.21795 0.96272 1.00987 1.02120 1.21517 0.95613 0.97309 1.01448 1.21653 0.95676 0.96147 1.02724 1.21959 0.95573 0.97136 1.01767 1.21018 0.95577 0.92722 0.86331 0.86340 1.22134 0.95634 1.03304 1.00578 1.57423 1.64743 1.48778 1.11650 1.21284 0.99154 0.99885 0.84477 1.01176 0.73302 0.73064 0.72534 1.93443 1.71586 1.87566 1.46024 1.93494 1.72681 1.86778 1.42522 1.29995 1.29888 1.23234 1.03580 1.20394 0.92991 0.92514 0.94444 1.20494 1.06912 1.00632 1.00095 1.20833 0.95296 0.96916 0.93224 1.21237 1.07655 0.97513 0.99325 1.17059 0.87086 0.90474 0.89432 1.20450 1.02036 1.20677 1.05110 0.84926 1.26159 1.01435 0.92113 0.93142 1.69672 1.31885 1.30906 1.06745 0.86564 0.79735 0.78871 0.82439 1.19351 1.16361 1.21121 0.93226 0.92782 0.92584 0.92232 0.92481 0.92620 0.90987 0.91319 0.92100 0.90859 0.93433 0.92261 0.93276 0.91483 0.91605 0.87003 0.88172 0.88360 0.87630 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.50 5.93 -26.73 -0.16 -1.66 16 3 C -0.12 -1.90 5.10 -26.73 -0.14 -2.04 16 4 C -0.13 -1.84 4.70 -26.73 -0.13 -1.96 16 5 C 0.15 2.64 1.68 -67.93 -0.11 2.52 16 6 H 0.12 2.46 4.77 -51.93 -0.25 2.21 16 7 C -0.16 -2.66 8.66 37.16 0.32 -2.34 16 8 N -0.99 -18.10 2.52 -114.61 -0.29 -18.39 16 9 C 0.10 1.48 9.53 59.85 0.57 2.05 16 10 S 2.70 58.87 5.04 -107.50 -0.54 58.33 16 11 O -1.00 -22.42 16.17 -57.17 -0.92 -23.35 16 12 O -0.96 -23.18 14.35 -57.17 -0.82 -24.01 16 13 C -0.77 -17.89 5.97 -38.87 -0.23 -18.12 16 14 C 0.02 0.36 9.54 -39.66 -0.38 -0.02 16 15 C -0.26 -5.35 10.05 -39.29 -0.39 -5.75 16 16 C -0.04 -0.92 10.02 -39.66 -0.40 -1.32 16 17 C -0.24 -5.48 7.18 -38.87 -0.28 -5.76 16 18 C 0.16 3.98 5.12 -106.83 -0.55 3.43 16 19 C -0.46 -11.12 6.28 -37.74 -0.24 -11.36 16 20 H 0.13 3.44 3.96 -52.49 -0.21 3.23 16 21 C 0.10 2.20 4.27 -17.34 -0.07 2.13 16 22 N -0.77 -17.87 13.93 55.55 0.77 -17.10 16 23 Si 0.90 18.65 23.16 -169.99 -3.94 14.72 16 24 H -0.27 -5.49 6.62 56.52 0.37 -5.12 16 25 H -0.24 -5.13 6.89 56.52 0.39 -4.74 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 36 H 0.07 1.40 4.42 -51.93 -0.23 1.17 16 37 H 0.05 0.68 6.57 -51.93 -0.34 0.34 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.88 6.21 -51.93 -0.32 0.55 16 41 H 0.07 0.99 7.79 -51.93 -0.40 0.58 16 42 H 0.11 2.23 7.32 -52.49 -0.38 1.84 16 43 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 44 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 45 H 0.11 2.37 4.59 -52.48 -0.24 2.13 16 46 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -27.50 358.46 -9.15 -36.66 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.00 Total: 9.39 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: -1.81 Total: -41.65 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.48 Total: -35.49 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -1.74 Total: -47.35 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -3.94 Total: 14.72 kcal Atomic # 16 Polarization: 58.87 SS G_CDS: -0.54 Total: 58.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.50 -9.15 -36.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.360 kcal (2) G-P(sol) polarization free energy of solvation -27.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds