Wall clock time and date at job start Tue Mar 31 2020 14:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47033 * 2 1 4 4 C 1.53003 * 109.46806 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46806 * 179.97438 * 4 3 2 6 6 H 1.08991 * 109.47582 * 305.00575 * 5 4 3 7 7 C 1.52998 * 109.47409 * 184.99771 * 5 4 3 8 8 N 1.46508 * 109.46938 * 65.00260 * 5 4 3 9 9 C 1.46507 * 119.99915 * 65.22882 * 8 5 4 10 10 S 1.65603 * 120.00071 * 245.22810 * 8 5 4 11 11 O 1.42097 * 106.39981 * 150.34479 * 10 8 5 12 12 O 1.42100 * 106.40018 * 17.42543 * 10 8 5 13 13 C 1.76200 * 107.21826 * 263.88429 * 10 8 5 14 14 C 1.37637 * 120.12898 * 246.86414 * 13 10 8 15 15 C 1.38612 * 120.24777 * 180.31688 * 14 13 10 16 16 C 1.38664 * 120.50152 * 359.67871 * 15 14 13 17 17 C 1.37598 * 120.24457 * 359.97438 * 16 15 14 18 18 C 1.40697 * 120.12554 * 66.55995 * 13 10 8 19 19 C 1.41393 * 120.24692 * 359.97438 * 18 13 10 20 20 H 1.08001 * 119.99827 * 29.41070 * 19 18 13 21 21 C 1.39945 * 120.00446 * 209.41235 * 19 18 13 22 22 N 1.30822 * 120.00483 * 197.25527 * 21 19 18 23 23 Si 1.86807 * 119.99809 * 17.24827 * 21 19 18 24 24 H 1.48495 * 109.47087 * 266.57038 * 23 21 19 25 25 H 1.48504 * 109.46886 * 26.56816 * 23 21 19 26 26 H 1.48497 * 109.47083 * 146.56338 * 23 21 19 27 27 H 1.09006 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47354 * 299.99512 * 1 2 3 29 29 H 1.08994 * 109.47520 * 59.99601 * 1 2 3 30 30 H 1.09003 * 109.46884 * 240.00342 * 2 1 3 31 31 H 1.09003 * 109.47325 * 120.00449 * 2 1 3 32 32 H 1.09003 * 109.47006 * 60.00417 * 3 2 1 33 33 H 1.08994 * 109.47293 * 300.00537 * 3 2 1 34 34 H 1.08994 * 109.46897 * 60.00516 * 4 3 2 35 35 H 1.09001 * 109.46963 * 299.99898 * 4 3 2 36 36 H 1.08993 * 109.47546 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.47177 * 300.00948 * 7 5 4 38 38 H 1.09005 * 109.46772 * 59.99996 * 7 5 4 39 39 H 1.08998 * 109.46421 * 274.67457 * 9 8 5 40 40 H 1.08991 * 109.46975 * 34.67894 * 9 8 5 41 41 H 1.09003 * 109.46887 * 154.67839 * 9 8 5 42 42 H 1.07998 * 119.87397 * 0.02562 * 14 13 10 43 43 H 1.08000 * 119.75054 * 179.69402 * 15 14 13 44 44 H 1.07995 * 119.87477 * 180.02562 * 16 15 14 45 45 H 1.08006 * 120.12184 * 180.02562 * 17 16 15 46 46 H 0.96995 * 120.00396 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0799 2.8850 -0.0013 6 1 3.6450 3.4238 -0.8429 7 6 5.6047 2.8869 -0.1276 8 7 3.6929 3.5403 1.2506 9 6 4.2464 3.0725 2.5239 10 16 2.6298 4.8098 1.2264 11 8 1.9347 4.7746 2.4653 12 8 1.9750 4.7608 -0.0338 13 6 3.5851 6.2903 1.2337 14 6 3.5490 7.1304 2.3233 15 6 4.2945 8.2990 2.3289 16 6 5.0890 8.6323 1.2425 17 6 5.1459 7.8037 0.1454 18 6 4.3927 6.6151 0.1283 19 6 4.4431 5.7562 -0.9938 20 1 3.5867 5.1491 -1.2480 21 6 5.6025 5.6926 -1.7749 22 7 5.5538 5.1797 -2.9774 23 14 7.2197 6.3402 -1.1004 24 1 7.4007 7.7530 -1.5202 25 1 7.2041 6.2624 0.3825 26 1 8.3397 5.5198 -1.6273 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9328 0.9288 -0.8909 35 1 3.9336 0.9285 0.8891 36 1 5.9681 3.9144 -0.1276 37 1 6.0397 2.3480 0.7141 38 1 5.8927 2.3992 -1.0590 39 1 3.6450 2.2445 2.8990 40 1 5.2724 2.7372 2.3727 41 1 4.2335 3.8879 3.2471 42 1 2.9340 6.8805 3.1751 43 1 4.2563 8.9549 3.1861 44 1 5.6660 9.5451 1.2578 45 1 5.7657 8.0650 -0.6996 46 1 6.3574 5.1360 -3.5189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601415215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:10 Heat of formation + Delta-G solvation = -90.038241 kcal Electronic energy + Delta-G solvation = -27914.695804 eV Core-core repulsion = 24315.712501 eV Total energy + Delta-G solvation = -3598.983303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.62254 -38.93369 -38.07662 -36.67477 -35.84414 -35.53997 -32.48031 -32.32438 -31.79955 -29.65241 -27.30955 -27.11831 -24.85728 -23.73039 -22.91802 -21.95859 -21.55289 -19.76329 -19.35956 -18.88985 -18.09846 -17.15143 -16.99683 -16.32732 -15.98054 -15.77533 -15.38944 -15.28532 -15.05481 -14.95212 -14.60427 -14.39036 -14.05512 -13.83849 -13.63370 -13.52325 -13.27611 -13.19197 -13.08876 -12.97920 -12.94193 -12.75012 -12.56782 -12.47563 -12.31801 -12.12948 -11.96817 -11.88274 -11.69952 -11.43330 -11.36257 -11.35621 -11.14339 -10.97198 -9.99322 -9.70086 -9.58592 -8.97201 -6.67921 -0.20156 0.35742 0.78792 1.23417 1.34384 1.43624 2.05137 2.26760 2.50313 2.98936 3.34952 3.65901 3.78003 4.07414 4.14951 4.18785 4.19911 4.29620 4.38877 4.48626 4.57293 4.62083 4.66574 4.69333 4.78714 4.86951 4.89027 4.90949 4.94717 4.97716 5.03779 5.05545 5.16278 5.17834 5.23299 5.31768 5.38858 5.39753 5.51326 5.56043 5.57053 5.62827 5.72494 5.84288 5.98489 6.11718 6.32011 6.56476 6.72472 8.04898 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.006348 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.610490 B = 4409.884302 C = 5546.295237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.126 4.126 4 C -0.118 4.118 5 C 0.147 3.853 6 H 0.081 0.919 7 C -0.155 4.155 8 N -0.985 5.985 9 C 0.087 3.913 10 S 2.709 3.291 11 O -1.008 7.008 12 O -0.997 6.997 13 C -0.791 4.791 14 C 0.001 3.999 15 C -0.255 4.255 16 C -0.042 4.042 17 C -0.263 4.263 18 C 0.147 3.853 19 C -0.475 4.475 20 H 0.107 0.893 21 C 0.079 3.921 22 N -0.799 5.799 23 Si 0.937 3.063 24 H -0.264 1.264 25 H -0.250 1.250 26 H -0.268 1.268 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.107 0.893 46 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 -7.572 6.164 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.164 4.164 4 C -0.157 4.157 5 C 0.042 3.958 6 H 0.099 0.901 7 C -0.214 4.214 8 N -0.823 5.823 9 C -0.058 4.058 10 S 2.807 3.193 11 O -0.998 6.998 12 O -0.987 6.987 13 C -0.885 4.885 14 C -0.019 4.019 15 C -0.275 4.275 16 C -0.061 4.061 17 C -0.282 4.282 18 C 0.143 3.857 19 C -0.501 4.501 20 H 0.125 0.875 21 C -0.143 4.143 22 N -0.421 5.421 23 Si 0.761 3.239 24 H -0.190 1.190 25 H -0.173 1.173 26 H -0.194 1.194 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.124 0.876 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.983 -7.811 5.874 9.973 hybrid contribution 1.030 1.190 -0.292 1.601 sum 3.014 -6.621 5.582 9.170 Atomic orbital electron populations 1.21824 0.96092 1.02187 1.01334 1.21494 0.95823 0.95209 1.02830 1.21651 0.96354 0.97846 1.00546 1.21927 0.94912 0.95222 1.03607 1.21007 0.96109 0.93830 0.84852 0.90144 1.22104 0.94866 1.02287 1.02111 1.57167 1.64460 1.47554 1.13125 1.21604 1.00814 1.00517 0.82845 1.00744 0.73585 0.73429 0.71558 1.93410 1.72344 1.87910 1.46177 1.93450 1.74028 1.87298 1.43971 1.30260 1.29793 1.24425 1.03993 1.20722 0.93640 0.93001 0.94516 1.20961 1.05307 1.00224 1.00968 1.21270 0.94931 0.97604 0.92272 1.21397 1.08460 0.97837 1.00550 1.17260 0.87825 0.91021 0.89620 1.20315 1.02099 1.21434 1.06286 0.87524 1.26534 1.02871 0.91926 0.92997 1.69676 1.33060 1.31915 1.07488 0.85962 0.77714 0.78870 0.81363 1.18964 1.17313 1.19360 0.90984 0.93531 0.93520 0.91011 0.90791 0.94420 0.93718 0.89924 0.89559 0.93248 0.90442 0.91821 0.91208 0.89059 0.91775 0.85652 0.84590 0.84698 0.87584 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.91 71.98 0.71 -2.86 16 2 C -0.12 -2.71 5.93 30.59 0.18 -2.52 16 3 C -0.13 -3.88 5.10 30.60 0.16 -3.72 16 4 C -0.12 -3.32 4.70 30.60 0.14 -3.17 16 5 C 0.15 5.25 1.68 44.99 0.08 5.32 16 6 H 0.08 3.54 4.77 -2.39 -0.01 3.53 16 7 C -0.16 -5.09 8.66 71.98 0.62 -4.46 16 8 N -0.98 -35.94 2.52 -516.50 -1.30 -37.24 16 9 C 0.09 2.46 9.53 127.77 1.22 3.67 16 10 S 2.71 121.24 5.04 -56.49 -0.28 120.96 16 11 O -1.01 -45.86 16.17 -128.00 -2.07 -47.93 16 12 O -1.00 -50.84 14.35 -128.00 -1.84 -52.68 16 13 C -0.79 -37.00 5.97 22.73 0.14 -36.86 16 14 C 0.00 0.04 9.54 22.22 0.21 0.25 16 15 C -0.25 -9.76 10.05 22.46 0.23 -9.54 16 16 C -0.04 -1.67 10.02 22.22 0.22 -1.45 16 17 C -0.26 -11.95 7.18 22.73 0.16 -11.79 16 18 C 0.15 7.24 5.12 -21.29 -0.11 7.13 16 19 C -0.47 -23.99 6.28 23.46 0.15 -23.84 16 20 H 0.11 5.91 3.96 -2.91 -0.01 5.90 16 21 C 0.08 3.69 4.27 85.26 0.36 4.05 16 22 N -0.80 -37.95 13.93 21.83 0.30 -37.65 16 23 Si 0.94 37.87 23.16 68.60 1.59 39.45 16 24 H -0.26 -10.39 6.62 99.48 0.66 -9.73 16 25 H -0.25 -10.36 6.89 99.48 0.69 -9.68 16 26 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 27 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.26 7.75 -2.39 -0.02 1.25 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 2.00 7.66 -2.39 -0.02 1.98 16 36 H 0.05 1.87 4.42 -2.39 -0.01 1.86 16 37 H 0.08 2.01 6.57 -2.39 -0.02 1.99 16 38 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 2.12 6.21 -2.39 -0.01 2.10 16 41 H 0.06 1.83 7.79 -2.39 -0.02 1.81 16 42 H 0.13 4.85 7.32 -2.91 -0.02 4.83 16 43 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 44 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 45 H 0.11 4.71 4.59 -2.91 -0.01 4.70 16 46 H 0.30 12.73 8.30 -92.71 -0.77 11.96 16 Total: -1.00 -61.26 358.46 1.78 -59.48 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.91 Total: 35.39 kcal Atomic # 6 Polarization: -84.26 SS G_CDS: 4.47 Total: -79.79 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.00 Total: -74.89 kcal Atomic # 8 Polarization: -96.70 SS G_CDS: -3.91 Total: -100.61 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.59 Total: 39.45 kcal Atomic # 16 Polarization: 121.24 SS G_CDS: -0.28 Total: 120.96 kcal Total: -61.26 1.78 -59.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.556 kcal (2) G-P(sol) polarization free energy of solvation -61.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds