Wall clock time and date at job start Tue Mar 31 2020 14:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46729 * 2 1 4 4 C 1.53004 * 109.46857 * 174.99901 * 3 2 1 5 5 C 1.52995 * 109.46816 * 182.54034 * 4 3 2 6 6 N 1.46497 * 109.47069 * 295.00030 * 3 2 1 7 7 C 1.46510 * 119.99796 * 305.97090 * 6 3 2 8 8 C 1.53004 * 109.46740 * 272.88881 * 7 6 3 9 9 S 1.65596 * 120.00182 * 125.97241 * 6 3 2 10 10 O 1.42101 * 106.40414 * 163.16730 * 9 6 3 11 11 O 1.42097 * 106.40044 * 30.24908 * 9 6 3 12 12 C 1.76202 * 107.21922 * 276.70657 * 9 6 3 13 13 C 1.37637 * 120.12760 * 112.05626 * 12 9 6 14 14 C 1.38615 * 120.24743 * 180.31901 * 13 12 9 15 15 C 1.38654 * 120.49889 * 359.68249 * 14 13 12 16 16 C 1.37593 * 120.25189 * 359.97438 * 15 14 13 17 17 C 1.40698 * 120.12453 * 291.75654 * 12 9 6 18 18 C 1.41392 * 120.24946 * 359.97438 * 17 12 9 19 19 H 1.08000 * 119.99397 * 329.06663 * 18 17 12 20 20 C 1.39941 * 120.00272 * 149.06095 * 18 17 12 21 21 N 1.30815 * 120.00270 * 339.86385 * 20 18 17 22 22 Si 1.86800 * 119.99822 * 159.86239 * 20 18 17 23 23 H 1.48499 * 109.46916 * 270.00009 * 22 20 18 24 24 H 1.48503 * 109.47315 * 30.00197 * 22 20 18 25 25 H 1.48500 * 109.47120 * 150.00137 * 22 20 18 26 26 H 1.08993 * 109.47050 * 299.99783 * 1 2 3 27 27 H 1.08998 * 109.46818 * 60.00421 * 1 2 3 28 28 H 1.09003 * 109.46348 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47120 * 239.99673 * 2 1 3 30 30 H 1.08998 * 109.46818 * 119.99579 * 2 1 3 31 31 H 1.08999 * 109.47148 * 55.00014 * 3 2 1 32 32 H 1.08994 * 109.47262 * 302.54218 * 4 3 2 33 33 H 1.09006 * 109.46673 * 62.54020 * 4 3 2 34 34 H 1.09000 * 109.47047 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.47233 * 299.99411 * 5 4 3 36 36 H 1.08997 * 109.47410 * 60.00230 * 5 4 3 37 37 H 1.09000 * 109.47089 * 32.89019 * 7 6 3 38 38 H 1.08997 * 109.47217 * 152.89090 * 7 6 3 39 39 H 1.09004 * 109.46357 * 186.19048 * 8 7 6 40 40 H 1.09004 * 109.47391 * 306.18840 * 8 7 6 41 41 H 1.08996 * 109.47252 * 66.19084 * 8 7 6 42 42 H 1.08001 * 119.87588 * 0.02562 * 13 12 9 43 43 H 1.07997 * 119.74802 * 179.69592 * 14 13 12 44 44 H 1.08005 * 119.87581 * 180.02562 * 15 14 13 45 45 H 1.07999 * 120.13156 * 180.02562 * 16 15 14 46 46 H 0.97001 * 120.00041 * 354.31569 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5649 1.4444 0.1258 5 6 4.0695 2.8874 0.1895 6 7 1.6524 2.0975 -1.2518 7 6 2.0029 1.4873 -2.5368 8 6 3.4015 1.9461 -2.9546 9 16 0.8181 3.5275 -1.2143 10 8 0.9378 4.0960 -2.5112 11 8 1.2264 4.1993 -0.0306 12 6 -0.8855 3.1320 -0.9998 13 6 -1.5279 3.4578 0.1731 14 6 -2.8663 3.1420 0.3471 15 6 -3.5746 2.5014 -0.6581 16 6 -2.9547 2.1725 -1.8415 17 6 -1.5959 2.4876 -2.0291 18 6 -0.9482 2.1542 -3.2410 19 1 -0.1401 2.7694 -3.6082 20 6 -1.3542 1.0272 -3.9644 21 7 -2.0288 0.0768 -3.3704 22 14 -0.9329 0.8800 -5.7783 23 1 -2.0197 1.4850 -6.5895 24 1 0.3421 1.5914 -6.0497 25 1 -0.7862 -0.5534 -6.1376 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6054 1.9816 0.8418 32 1 3.8551 0.9175 1.0346 33 1 4.0013 0.9447 -0.7391 34 1 5.1558 2.8887 0.2786 35 1 3.7793 3.4143 -0.7195 36 1 3.6330 3.3871 1.0542 37 1 1.9906 0.4018 -2.4389 38 1 1.2796 1.7921 -3.2931 39 1 3.6183 1.5819 -3.9588 40 1 3.4444 3.0352 -2.9459 41 1 4.1380 1.5479 -2.2567 42 1 -0.9859 3.9572 0.9626 43 1 -3.3611 3.3970 1.2726 44 1 -4.6173 2.2604 -0.5119 45 1 -3.5084 1.6739 -2.6234 46 1 -2.1766 0.1128 -2.4124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601417057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:17 Heat of formation + Delta-G solvation = -75.382345 kcal Electronic energy + Delta-G solvation = -28812.520965 eV Core-core repulsion = 25214.173189 eV Total energy + Delta-G solvation = -3598.347776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.17682 -37.81080 -36.41702 -34.89393 -34.11318 -32.81476 -31.81773 -30.20504 -29.48412 -29.34617 -25.77279 -25.42504 -22.67085 -21.84484 -21.60769 -21.21269 -20.01428 -18.51417 -17.96185 -17.28058 -16.15855 -15.52316 -14.99301 -14.69527 -14.44336 -14.09369 -13.94899 -13.79531 -13.45151 -13.28485 -13.16339 -12.65462 -12.60308 -12.38558 -12.26799 -12.07373 -11.61218 -11.53338 -11.41882 -11.29401 -11.20732 -11.15174 -11.09417 -10.96435 -10.85696 -10.59383 -10.50172 -10.46470 -10.37744 -10.11527 -10.01341 -9.70830 -9.34593 -9.19500 -8.39916 -8.18467 -7.79910 -7.42404 -4.86461 1.48342 2.21501 2.62753 3.07063 3.15299 3.26729 3.81921 3.85079 4.32855 4.71493 4.91128 5.10191 5.28446 5.32109 5.37547 5.51952 5.60109 5.70760 5.76430 5.81647 5.86282 5.89652 5.93889 6.03862 6.09198 6.13420 6.16854 6.26726 6.28160 6.35672 6.44110 6.46908 6.54951 6.58979 6.62250 6.77515 6.86827 6.89848 6.98781 7.15437 7.28413 7.31055 7.44290 7.57702 7.68138 7.82779 7.97966 8.38687 8.58568 9.80236 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.008021 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.283138 B = 3490.148304 C = 4439.465552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.128 4.128 3 C 0.156 3.844 4 C -0.133 4.133 5 C -0.152 4.152 6 N -0.980 5.980 7 C 0.109 3.891 8 C -0.177 4.177 9 S 2.701 3.299 10 O -0.973 6.973 11 O -0.994 6.994 12 C -0.776 4.776 13 C 0.011 3.989 14 C -0.259 4.259 15 C -0.056 4.056 16 C -0.209 4.209 17 C 0.176 3.824 18 C -0.531 4.531 19 H 0.120 0.880 20 C 0.044 3.956 21 N -0.782 5.782 22 Si 1.057 2.943 23 H -0.272 1.272 24 H -0.266 1.266 25 H -0.273 1.273 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.110 0.890 46 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.136 -2.703 2.823 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.167 4.167 3 C 0.049 3.951 4 C -0.172 4.172 5 C -0.209 4.209 6 N -0.815 5.815 7 C -0.016 4.016 8 C -0.235 4.235 9 S 2.800 3.200 10 O -0.963 6.963 11 O -0.985 6.985 12 C -0.871 4.871 13 C -0.009 4.009 14 C -0.279 4.279 15 C -0.075 4.075 16 C -0.229 4.229 17 C 0.171 3.829 18 C -0.557 4.557 19 H 0.137 0.863 20 C -0.180 4.180 21 N -0.404 5.404 22 Si 0.880 3.120 23 H -0.197 1.197 24 H -0.191 1.191 25 H -0.198 1.198 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.127 0.873 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.307 -2.879 1.424 7.982 hybrid contribution -0.756 0.437 1.607 1.829 sum 6.552 -2.442 3.031 7.621 Atomic orbital electron populations 1.21863 0.94793 1.01239 1.03654 1.21831 0.97145 0.96053 1.01633 1.20825 0.94309 0.93892 0.86089 1.22004 0.95715 0.97634 1.01870 1.21786 0.99750 0.96627 1.02734 1.57467 1.70738 1.42809 1.10513 1.21533 0.96631 0.98633 0.84780 1.22473 0.98145 1.02017 1.00909 1.01132 0.74050 0.72324 0.72531 1.93462 1.87267 1.75541 1.40061 1.93439 1.82915 1.72257 1.49889 1.29928 1.22529 1.31229 1.03364 1.20305 0.94400 0.92354 0.93820 1.20454 0.95524 1.11911 1.00041 1.20833 0.97565 0.95313 0.93802 1.21365 0.95243 1.08476 0.97834 1.16990 0.90772 0.85495 0.89682 1.21549 1.18715 1.11051 1.04429 0.86288 1.27053 0.91840 0.91766 1.07356 1.70441 1.24455 1.30044 1.15489 0.83740 0.78407 0.77466 0.72428 1.19696 1.19053 1.19839 0.93330 0.90047 0.93606 0.91451 0.92011 0.89380 0.91701 0.91019 0.93389 0.92916 0.91984 0.90930 0.87534 0.92243 0.92494 0.92284 0.87472 0.88620 0.88746 0.87250 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.80 37.16 0.36 -2.34 16 2 C -0.13 -1.84 5.25 -26.72 -0.14 -1.98 16 3 C 0.16 2.41 1.97 -67.93 -0.13 2.27 16 4 C -0.13 -1.74 4.91 -26.73 -0.13 -1.87 16 5 C -0.15 -2.14 9.10 37.15 0.34 -1.80 16 6 N -0.98 -17.49 1.52 -107.29 -0.16 -17.66 16 7 C 0.11 1.86 5.36 -4.03 -0.02 1.83 16 8 C -0.18 -2.59 8.99 37.16 0.33 -2.26 16 9 S 2.70 58.29 5.08 -107.50 -0.55 57.74 16 10 O -0.97 -23.30 14.47 -57.17 -0.83 -24.13 16 11 O -0.99 -22.05 15.43 -57.17 -0.88 -22.94 16 12 C -0.78 -17.77 5.28 -38.87 -0.21 -17.98 16 13 C 0.01 0.24 9.53 -39.66 -0.38 -0.13 16 14 C -0.26 -5.44 10.05 -39.29 -0.39 -5.84 16 15 C -0.06 -1.20 10.02 -39.66 -0.40 -1.60 16 16 C -0.21 -4.90 7.85 -38.87 -0.31 -5.20 16 17 C 0.18 4.20 4.11 -106.82 -0.44 3.76 16 18 C -0.53 -12.52 6.31 -37.74 -0.24 -12.76 16 19 H 0.12 2.89 4.09 -52.49 -0.21 2.68 16 20 C 0.04 0.99 5.03 -17.35 -0.09 0.90 16 21 N -0.78 -18.20 12.45 55.55 0.69 -17.51 16 22 Si 1.06 19.91 29.98 -169.99 -5.10 14.82 16 23 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 25 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.62 5.79 -51.93 -0.30 1.32 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.94 6.29 -51.93 -0.33 0.62 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.45 7.23 -51.93 -0.38 1.07 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.87 5.45 -51.93 -0.28 0.59 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.83 6.60 -51.93 -0.34 0.48 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.12 6.06 -51.93 -0.31 0.81 16 38 H 0.11 2.07 4.27 -51.93 -0.22 1.85 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 41 H 0.06 0.75 5.17 -51.93 -0.27 0.49 16 42 H 0.11 2.20 7.33 -52.49 -0.38 1.81 16 43 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 45 H 0.11 2.61 6.69 -52.49 -0.35 2.26 16 46 H 0.30 7.18 6.47 -40.82 -0.26 6.91 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -26.60 356.22 -9.95 -36.55 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -6.66 Total: 12.75 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: -1.84 Total: -44.99 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.53 Total: -35.17 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.71 Total: -47.07 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.10 Total: 14.82 kcal Atomic # 16 Polarization: 58.29 SS G_CDS: -0.55 Total: 57.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.60 -9.95 -36.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601417057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.836 kcal (2) G-P(sol) polarization free energy of solvation -26.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds