Wall clock time and date at job start Tue Mar 31 2020 14:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46729 * 2 1 4 4 C 1.53004 * 109.46857 * 174.99901 * 3 2 1 5 5 C 1.52995 * 109.46816 * 182.54034 * 4 3 2 6 6 N 1.46497 * 109.47069 * 295.00030 * 3 2 1 7 7 C 1.46510 * 119.99796 * 305.97090 * 6 3 2 8 8 C 1.53004 * 109.46740 * 272.88881 * 7 6 3 9 9 S 1.65596 * 120.00182 * 125.97241 * 6 3 2 10 10 O 1.42101 * 106.40414 * 163.16730 * 9 6 3 11 11 O 1.42097 * 106.40044 * 30.24908 * 9 6 3 12 12 C 1.76202 * 107.21922 * 276.70657 * 9 6 3 13 13 C 1.37637 * 120.12760 * 112.05626 * 12 9 6 14 14 C 1.38615 * 120.24743 * 180.31901 * 13 12 9 15 15 C 1.38654 * 120.49889 * 359.68249 * 14 13 12 16 16 C 1.37593 * 120.25189 * 359.97438 * 15 14 13 17 17 C 1.40698 * 120.12453 * 291.75654 * 12 9 6 18 18 C 1.41392 * 120.24946 * 359.97438 * 17 12 9 19 19 H 1.08000 * 119.99397 * 329.06663 * 18 17 12 20 20 C 1.39941 * 120.00272 * 149.06095 * 18 17 12 21 21 N 1.30815 * 120.00270 * 339.86385 * 20 18 17 22 22 Si 1.86800 * 119.99822 * 159.86239 * 20 18 17 23 23 H 1.48499 * 109.46916 * 270.00009 * 22 20 18 24 24 H 1.48503 * 109.47315 * 30.00197 * 22 20 18 25 25 H 1.48500 * 109.47120 * 150.00137 * 22 20 18 26 26 H 1.08993 * 109.47050 * 299.99783 * 1 2 3 27 27 H 1.08998 * 109.46818 * 60.00421 * 1 2 3 28 28 H 1.09003 * 109.46348 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47120 * 239.99673 * 2 1 3 30 30 H 1.08998 * 109.46818 * 119.99579 * 2 1 3 31 31 H 1.08999 * 109.47148 * 55.00014 * 3 2 1 32 32 H 1.08994 * 109.47262 * 302.54218 * 4 3 2 33 33 H 1.09006 * 109.46673 * 62.54020 * 4 3 2 34 34 H 1.09000 * 109.47047 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.47233 * 299.99411 * 5 4 3 36 36 H 1.08997 * 109.47410 * 60.00230 * 5 4 3 37 37 H 1.09000 * 109.47089 * 32.89019 * 7 6 3 38 38 H 1.08997 * 109.47217 * 152.89090 * 7 6 3 39 39 H 1.09004 * 109.46357 * 186.19048 * 8 7 6 40 40 H 1.09004 * 109.47391 * 306.18840 * 8 7 6 41 41 H 1.08996 * 109.47252 * 66.19084 * 8 7 6 42 42 H 1.08001 * 119.87588 * 0.02562 * 13 12 9 43 43 H 1.07997 * 119.74802 * 179.69592 * 14 13 12 44 44 H 1.08005 * 119.87581 * 180.02562 * 15 14 13 45 45 H 1.07999 * 120.13156 * 180.02562 * 16 15 14 46 46 H 0.97001 * 120.00041 * 354.31569 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5649 1.4444 0.1258 5 6 4.0695 2.8874 0.1895 6 7 1.6524 2.0975 -1.2518 7 6 2.0029 1.4873 -2.5368 8 6 3.4015 1.9461 -2.9546 9 16 0.8181 3.5275 -1.2143 10 8 0.9378 4.0960 -2.5112 11 8 1.2264 4.1993 -0.0306 12 6 -0.8855 3.1320 -0.9998 13 6 -1.5279 3.4578 0.1731 14 6 -2.8663 3.1420 0.3471 15 6 -3.5746 2.5014 -0.6581 16 6 -2.9547 2.1725 -1.8415 17 6 -1.5959 2.4876 -2.0291 18 6 -0.9482 2.1542 -3.2410 19 1 -0.1401 2.7694 -3.6082 20 6 -1.3542 1.0272 -3.9644 21 7 -2.0288 0.0768 -3.3704 22 14 -0.9329 0.8800 -5.7783 23 1 -2.0197 1.4850 -6.5895 24 1 0.3421 1.5914 -6.0497 25 1 -0.7862 -0.5534 -6.1376 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6054 1.9816 0.8418 32 1 3.8551 0.9175 1.0346 33 1 4.0013 0.9447 -0.7391 34 1 5.1558 2.8887 0.2786 35 1 3.7793 3.4143 -0.7195 36 1 3.6330 3.3871 1.0542 37 1 1.9906 0.4018 -2.4389 38 1 1.2796 1.7921 -3.2931 39 1 3.6183 1.5819 -3.9588 40 1 3.4444 3.0352 -2.9459 41 1 4.1380 1.5479 -2.2567 42 1 -0.9859 3.9572 0.9626 43 1 -3.3611 3.3970 1.2726 44 1 -4.6173 2.2604 -0.5119 45 1 -3.5084 1.6739 -2.6234 46 1 -2.1766 0.1128 -2.4124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601417057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:16 Heat of formation + Delta-G solvation = -88.550024 kcal Electronic energy + Delta-G solvation = -28813.091958 eV Core-core repulsion = 25214.173189 eV Total energy + Delta-G solvation = -3598.918769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.71076 -39.28788 -38.16751 -36.66885 -35.83534 -34.10255 -32.99026 -31.92326 -31.21386 -30.66773 -27.17822 -27.01553 -23.96558 -23.56623 -22.96643 -22.73426 -21.35012 -20.20360 -19.46051 -18.89748 -17.84073 -17.02887 -16.67086 -16.29828 -15.81109 -15.54831 -15.50197 -15.14675 -14.95401 -14.77875 -14.57826 -14.30078 -13.93570 -13.81824 -13.59412 -13.37962 -13.22607 -13.03857 -12.99374 -12.94157 -12.75751 -12.72167 -12.57788 -12.39161 -12.24629 -12.06907 -11.94164 -11.73600 -11.71573 -11.50460 -11.32731 -11.13195 -11.01728 -10.91139 -10.01266 -9.68843 -9.56454 -9.19586 -6.65302 -0.16941 0.45916 0.89076 1.52593 1.62130 1.80319 2.26667 2.29597 2.62196 3.01190 3.37630 3.64742 3.76259 4.15885 4.16836 4.19893 4.24437 4.33888 4.43913 4.51501 4.54846 4.58467 4.62878 4.66511 4.76140 4.80681 4.86099 4.97156 5.04637 5.12963 5.14303 5.16110 5.17901 5.29117 5.36886 5.37360 5.42779 5.51891 5.54056 5.61583 5.62374 5.67542 5.82523 5.89509 6.03736 6.05987 6.22276 6.62726 6.82740 8.01978 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.008021 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.283138 B = 3490.148304 C = 4439.465552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C 0.147 3.853 4 C -0.126 4.126 5 C -0.155 4.155 6 N -0.971 5.971 7 C 0.104 3.896 8 C -0.172 4.172 9 S 2.709 3.291 10 O -1.003 7.003 11 O -1.005 7.005 12 C -0.788 4.788 13 C -0.003 4.003 14 C -0.258 4.258 15 C -0.055 4.055 16 C -0.232 4.232 17 C 0.159 3.841 18 C -0.544 4.544 19 H 0.108 0.892 20 C 0.022 3.978 21 N -0.795 5.795 22 Si 1.090 2.910 23 H -0.270 1.270 24 H -0.255 1.255 25 H -0.262 1.262 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.082 0.918 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.097 0.903 46 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.555 -4.003 3.470 10.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C 0.042 3.958 4 C -0.165 4.165 5 C -0.212 4.212 6 N -0.809 5.809 7 C -0.020 4.020 8 C -0.230 4.230 9 S 2.807 3.193 10 O -0.993 6.993 11 O -0.996 6.996 12 C -0.882 4.882 13 C -0.023 4.023 14 C -0.278 4.278 15 C -0.074 4.074 16 C -0.252 4.252 17 C 0.155 3.845 18 C -0.571 4.571 19 H 0.126 0.874 20 C -0.198 4.198 21 N -0.417 5.417 22 Si 0.908 3.092 23 H -0.195 1.195 24 H -0.179 1.179 25 H -0.187 1.187 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.135 0.865 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.115 0.885 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.710 -4.169 2.092 9.880 hybrid contribution -1.225 0.871 1.530 2.145 sum 7.485 -3.299 3.622 8.945 Atomic orbital electron populations 1.21825 0.97036 1.00886 1.01759 1.21804 0.94944 0.95551 1.03489 1.21099 0.96330 0.94037 0.84368 1.21992 0.93279 0.97308 1.03934 1.21813 1.01421 0.97014 1.00945 1.57186 1.69827 1.41937 1.11902 1.21610 0.97273 0.99467 0.83677 1.22443 0.97102 1.00886 1.02618 1.00722 0.73779 0.73136 0.71627 1.93414 1.87543 1.76963 1.41413 1.93412 1.82904 1.73235 1.50056 1.30217 1.23640 1.30815 1.03493 1.20585 0.95170 0.92612 0.93921 1.20820 0.95200 1.10768 1.00979 1.21153 0.98933 0.94299 0.93010 1.21384 0.95340 1.09808 0.98655 1.17203 0.91216 0.85919 0.90186 1.21532 1.18974 1.11549 1.05018 0.87417 1.28000 0.90979 0.91018 1.09799 1.70512 1.25663 1.30578 1.14919 0.83348 0.78742 0.78138 0.68960 1.19498 1.17915 1.18671 0.94113 0.93055 0.93163 0.90635 0.88924 0.90716 0.88831 0.89588 0.90826 0.95110 0.93445 0.89222 0.90195 0.90448 0.94360 0.89941 0.86462 0.85630 0.85980 0.88457 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.30 9.80 71.99 0.71 -4.59 16 2 C -0.12 -3.15 5.25 30.60 0.16 -2.99 16 3 C 0.15 4.32 1.97 44.99 0.09 4.41 16 4 C -0.13 -2.89 4.91 30.59 0.15 -2.74 16 5 C -0.15 -4.05 9.10 71.98 0.65 -3.40 16 6 N -0.97 -34.29 1.52 -493.36 -0.75 -35.04 16 7 C 0.10 3.47 5.36 86.38 0.46 3.93 16 8 C -0.17 -4.77 8.99 71.98 0.65 -4.12 16 9 S 2.71 119.25 5.08 -56.49 -0.29 118.96 16 10 O -1.00 -49.64 14.47 -128.00 -1.85 -51.50 16 11 O -1.01 -45.22 15.43 -128.00 -1.98 -47.20 16 12 C -0.79 -36.84 5.28 22.73 0.12 -36.72 16 13 C 0.00 -0.14 9.53 22.22 0.21 0.07 16 14 C -0.26 -10.57 10.05 22.46 0.23 -10.34 16 15 C -0.06 -2.34 10.02 22.22 0.22 -2.12 16 16 C -0.23 -11.08 7.85 22.73 0.18 -10.90 16 17 C 0.16 7.84 4.11 -21.29 -0.09 7.75 16 18 C -0.54 -26.40 6.31 23.46 0.15 -26.25 16 19 H 0.11 5.43 4.09 -2.91 -0.01 5.42 16 20 C 0.02 1.02 5.03 85.26 0.43 1.45 16 21 N -0.79 -37.64 12.45 21.82 0.27 -37.36 16 22 Si 1.09 40.00 29.98 68.60 2.06 42.06 16 23 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 25 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 2.06 5.79 -2.39 -0.01 2.05 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.90 6.29 -2.39 -0.02 1.88 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 2.40 7.23 -2.39 -0.02 2.38 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.74 5.45 -2.38 -0.01 1.73 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.03 0.93 6.60 -2.39 -0.02 0.91 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 2.63 6.06 -2.39 -0.01 2.62 16 38 H 0.08 3.14 4.27 -2.39 -0.01 3.13 16 39 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.04 1.20 7.85 -2.38 -0.02 1.18 16 41 H 0.08 1.86 5.17 -2.39 -0.01 1.85 16 42 H 0.12 4.81 7.33 -2.91 -0.02 4.78 16 43 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 44 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 45 H 0.10 4.79 6.69 -2.91 -0.02 4.77 16 46 H 0.29 14.31 6.47 -92.71 -0.60 13.71 16 Total: -1.00 -58.91 356.22 2.93 -55.97 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: 1.15 Total: 40.66 kcal Atomic # 6 Polarization: -90.88 SS G_CDS: 4.32 Total: -86.56 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -0.48 Total: -72.40 kcal Atomic # 8 Polarization: -94.87 SS G_CDS: -3.83 Total: -98.70 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.06 Total: 42.06 kcal Atomic # 16 Polarization: 119.25 SS G_CDS: -0.29 Total: 118.96 kcal Total: -58.91 2.93 -55.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601417057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.577 kcal (2) G-P(sol) polarization free energy of solvation -58.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds