Wall clock time and date at job start Tue Mar 31 2020 14:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00329 * 2 1 4 4 C 1.52999 * 109.47157 * 277.14516 * 3 2 1 5 5 C 1.52999 * 109.47070 * 185.05223 * 4 3 2 6 6 C 1.53000 * 109.46763 * 64.98594 * 5 4 3 7 7 C 1.52991 * 109.47064 * 184.98465 * 5 4 3 8 8 C 1.52997 * 109.47223 * 304.98657 * 5 4 3 9 9 S 1.65599 * 119.99883 * 180.02562 * 2 1 3 10 10 O 1.42097 * 106.40377 * 150.25812 * 9 2 1 11 11 O 1.42105 * 106.40368 * 17.33687 * 9 2 1 12 12 C 1.76202 * 107.21788 * 263.79865 * 9 2 1 13 13 C 1.37634 * 120.13152 * 246.02881 * 12 9 2 14 14 C 1.38615 * 120.25286 * 180.32067 * 13 12 9 15 15 C 1.38660 * 120.49681 * 359.67544 * 14 13 12 16 16 C 1.37597 * 120.24840 * 359.97438 * 15 14 13 17 17 C 1.40699 * 120.12429 * 65.72823 * 12 9 2 18 18 C 1.41389 * 120.24955 * 359.97438 * 17 12 9 19 19 H 1.08001 * 119.99585 * 31.24874 * 18 17 12 20 20 C 1.39949 * 120.00395 * 211.24874 * 18 17 12 21 21 N 1.30819 * 119.99907 * 23.79061 * 20 18 17 22 22 Si 1.86799 * 119.99695 * 203.79000 * 20 18 17 23 23 H 1.48499 * 109.47233 * 274.95230 * 22 20 18 24 24 H 1.48499 * 109.47563 * 34.95683 * 22 20 18 25 25 H 1.48508 * 109.46831 * 154.95137 * 22 20 18 26 26 H 1.09000 * 109.46759 * 270.00081 * 1 2 3 27 27 H 1.08998 * 109.47025 * 29.99399 * 1 2 3 28 28 H 1.08996 * 109.47304 * 149.99742 * 1 2 3 29 29 H 1.09000 * 109.46705 * 37.14636 * 3 2 1 30 30 H 1.08997 * 109.47134 * 157.14225 * 3 2 1 31 31 H 1.08997 * 109.47147 * 305.05535 * 4 3 2 32 32 H 1.09008 * 109.46892 * 65.05480 * 4 3 2 33 33 H 1.09003 * 109.47033 * 61.30869 * 6 5 4 34 34 H 1.09006 * 109.47216 * 181.30657 * 6 5 4 35 35 H 1.09002 * 109.47477 * 301.31052 * 6 5 4 36 36 H 1.09005 * 109.47430 * 60.00281 * 7 5 4 37 37 H 1.09002 * 109.47138 * 180.02562 * 7 5 4 38 38 H 1.09005 * 109.47536 * 300.00047 * 7 5 4 39 39 H 1.09006 * 109.47270 * 60.00343 * 8 5 4 40 40 H 1.09000 * 109.47034 * 179.97438 * 8 5 4 41 41 H 1.08993 * 109.47065 * 299.99935 * 8 5 4 42 42 H 1.08002 * 119.87411 * 0.02562 * 13 12 9 43 43 H 1.07990 * 119.74936 * 179.69884 * 14 13 12 44 44 H 1.07999 * 119.87410 * 180.02562 * 15 14 13 45 45 H 1.07996 * 120.12468 * 180.02562 * 16 15 14 46 46 H 0.96999 * 119.99831 * 3.18730 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.2972 1.8001 -1.4313 5 6 3.1686 3.0576 -1.4489 6 6 4.6002 2.6915 -1.0521 7 6 3.1673 3.6592 -2.8556 8 6 2.6098 4.0793 -0.4567 9 16 2.2930 -1.4341 -0.0006 10 8 3.5186 -1.1896 -0.6768 11 8 1.3667 -2.4321 -0.4073 12 6 2.7112 -1.7957 1.6724 13 6 4.0292 -1.8045 2.0687 14 6 4.3615 -2.0951 3.3827 15 6 3.3723 -2.3733 4.3136 16 6 2.0476 -2.3631 3.9415 17 6 1.6986 -2.0703 2.6099 18 6 0.3407 -2.0574 2.2160 19 1 0.0677 -2.3396 1.2099 20 6 -0.6494 -1.6790 3.1298 21 7 -0.3432 -0.9163 4.1475 22 14 -2.4083 -2.2630 2.8960 23 1 -3.1157 -1.3446 1.9679 24 1 -2.4031 -3.6346 2.3268 25 1 -3.1046 -2.2742 4.2077 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6698 1.9929 0.6206 30 1 3.1993 1.1098 0.3992 31 1 2.7443 1.0392 -2.0710 32 1 1.3002 2.0437 -1.7986 33 1 5.0065 1.9812 -1.7722 34 1 5.2158 3.5911 -1.0421 35 1 4.5983 2.2414 -0.0593 36 1 2.1474 3.9200 -3.1383 37 1 3.7885 4.5548 -2.8682 38 1 3.5655 2.9313 -3.5625 39 1 2.6108 3.6506 0.5456 40 1 3.2308 4.9749 -0.4689 41 1 1.5899 4.3400 -0.7393 42 1 4.8079 -1.5888 1.3520 43 1 5.3986 -2.1045 3.6836 44 1 3.6425 -2.5980 5.3348 45 1 1.2788 -2.5797 4.6683 46 1 0.5597 -0.5752 4.2436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601451446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:34 Heat of formation + Delta-G solvation = -84.948623 kcal Electronic energy + Delta-G solvation = -27409.379097 eV Core-core repulsion = 23810.616496 eV Total energy + Delta-G solvation = -3598.762601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.24382 -37.84818 -36.37524 -35.22392 -34.88690 -34.06838 -30.21578 -29.53189 -29.25375 -27.26566 -27.18656 -25.77066 -25.10781 -22.54023 -21.79839 -21.22257 -18.55704 -18.43709 -17.93822 -17.01041 -16.15207 -15.71068 -14.95708 -14.77156 -14.55152 -14.35587 -14.14023 -13.77468 -13.60589 -13.38793 -13.18325 -13.07577 -12.65060 -12.37347 -12.35771 -12.01890 -11.80565 -11.73284 -11.62186 -11.55146 -11.28264 -11.20745 -11.17012 -11.05857 -10.95407 -10.78798 -10.57967 -10.55465 -10.49882 -10.42519 -10.18730 -9.86228 -9.37259 -9.18628 -8.36664 -8.19621 -7.81669 -7.49110 -4.86229 1.47071 2.21201 2.62921 3.05071 3.14507 3.28949 3.80665 3.83687 4.30649 4.68326 4.83700 4.87259 4.89925 5.10980 5.23153 5.37396 5.54068 5.55636 5.64917 5.71109 5.75392 5.82103 5.83472 5.89533 5.93909 5.99906 6.03476 6.05106 6.13612 6.17602 6.23132 6.27371 6.36279 6.47580 6.53464 6.56975 6.58687 6.66966 6.88157 7.14414 7.21046 7.28170 7.40648 7.56917 7.66617 7.82141 7.98028 8.38385 8.57665 9.76362 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.005345 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.596819 B = 5237.128430 C = 6096.110403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.996 5.996 3 C 0.129 3.871 4 C -0.128 4.128 5 C -0.067 4.067 6 C -0.146 4.146 7 C -0.139 4.139 8 C -0.145 4.145 9 S 2.705 3.295 10 O -0.993 6.993 11 O -0.974 6.974 12 C -0.781 4.781 13 C 0.011 3.989 14 C -0.261 4.261 15 C -0.057 4.057 16 C -0.208 4.208 17 C 0.171 3.829 18 C -0.527 4.527 19 H 0.115 0.885 20 C 0.044 3.956 21 N -0.778 5.778 22 Si 1.059 2.941 23 H -0.269 1.269 24 H -0.268 1.268 25 H -0.272 1.272 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 8.242 -5.971 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.832 5.832 3 C 0.003 3.997 4 C -0.168 4.168 5 C -0.068 4.068 6 C -0.203 4.203 7 C -0.197 4.197 8 C -0.202 4.202 9 S 2.803 3.197 10 O -0.984 6.984 11 O -0.965 6.965 12 C -0.875 4.875 13 C -0.009 4.009 14 C -0.282 4.282 15 C -0.076 4.076 16 C -0.228 4.228 17 C 0.166 3.834 18 C -0.554 4.554 19 H 0.133 0.867 20 C -0.181 4.181 21 N -0.400 5.400 22 Si 0.882 3.118 23 H -0.194 1.194 24 H -0.193 1.193 25 H -0.196 1.196 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.126 0.874 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.050 7.863 -6.024 9.905 hybrid contribution 1.718 0.064 0.391 1.763 sum 1.768 7.926 -5.633 9.884 Atomic orbital electron populations 1.21642 0.78673 1.02015 1.03098 1.57273 1.14945 1.20742 1.90196 1.21275 0.96463 0.85555 0.96445 1.22102 0.99703 0.96825 0.98142 1.20502 0.95768 0.95052 0.95505 1.21950 0.95133 1.00979 1.02232 1.21859 1.01424 1.00375 0.95997 1.21959 1.00584 0.98329 0.99371 1.01013 0.71999 0.72130 0.74598 1.93440 1.45640 1.85512 1.73799 1.93458 1.63644 1.56744 1.82639 1.29910 1.00528 1.33034 1.24067 1.20329 0.93800 0.91426 0.95380 1.20465 0.97410 1.16114 0.94179 1.20846 0.93633 0.95833 0.97273 1.21332 0.95091 1.08902 0.97460 1.17033 0.91679 0.84153 0.90519 1.21449 0.91386 1.39256 1.03324 0.86732 1.27119 1.07259 0.92519 0.91154 1.70476 1.25521 1.18128 1.25839 0.83721 0.72324 0.78067 0.77733 1.19423 1.19305 1.19650 0.91248 0.92518 0.90587 0.90822 0.90425 0.91105 0.91776 0.92239 0.93081 0.92116 0.92856 0.92896 0.92674 0.92093 0.92977 0.92728 0.87305 0.88491 0.88617 0.87382 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 9.10 59.85 0.54 2.13 16 2 N -1.00 -18.57 3.17 -121.76 -0.39 -18.96 16 3 C 0.13 2.04 4.55 -4.04 -0.02 2.02 16 4 C -0.13 -1.78 4.58 -26.73 -0.12 -1.90 16 5 C -0.07 -0.79 0.80 -154.51 -0.12 -0.91 16 6 C -0.15 -1.77 8.26 37.16 0.31 -1.47 16 7 C -0.14 -1.42 8.47 37.15 0.31 -1.10 16 8 C -0.15 -1.54 7.99 37.16 0.30 -1.24 16 9 S 2.70 59.78 5.03 -107.50 -0.54 59.24 16 10 O -0.99 -22.34 16.13 -57.17 -0.92 -23.26 16 11 O -0.97 -23.75 14.17 -57.17 -0.81 -24.56 16 12 C -0.78 -18.60 5.97 -38.87 -0.23 -18.83 16 13 C 0.01 0.24 9.53 -39.66 -0.38 -0.14 16 14 C -0.26 -5.63 10.05 -39.29 -0.39 -6.02 16 15 C -0.06 -1.25 10.02 -39.66 -0.40 -1.65 16 16 C -0.21 -5.01 7.95 -38.87 -0.31 -5.32 16 17 C 0.17 4.27 5.17 -106.82 -0.55 3.72 16 18 C -0.53 -12.84 6.02 -37.74 -0.23 -13.06 16 19 H 0.12 2.84 4.70 -52.49 -0.25 2.59 16 20 C 0.04 1.01 4.51 -17.34 -0.08 0.93 16 21 N -0.78 -18.60 12.59 55.55 0.70 -17.90 16 22 Si 1.06 20.07 29.99 -169.99 -5.10 14.97 16 23 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 24 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 25 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 26 H 0.07 1.30 6.40 -51.93 -0.33 0.97 16 27 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 28 H 0.08 1.35 6.80 -51.93 -0.35 1.00 16 29 H 0.07 1.07 6.63 -51.93 -0.34 0.72 16 30 H 0.08 1.28 5.88 -51.93 -0.31 0.97 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.82 8.13 -51.92 -0.42 0.39 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.68 6.46 -51.93 -0.34 0.34 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.11 2.26 7.32 -52.49 -0.38 1.88 16 43 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.11 2.61 6.90 -52.49 -0.36 2.25 16 46 H 0.30 7.40 6.71 -40.82 -0.27 7.13 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -27.96 367.04 -10.03 -37.99 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.13 Total: 9.80 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: -1.37 Total: -42.84 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.31 Total: -36.86 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -1.73 Total: -47.82 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.10 Total: 14.97 kcal Atomic # 16 Polarization: 59.78 SS G_CDS: -0.54 Total: 59.24 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.96 -10.03 -37.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601451446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.959 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds