Wall clock time and date at job start Tue Mar 31 2020 14:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00329 * 2 1 4 4 C 1.52999 * 109.47157 * 277.14516 * 3 2 1 5 5 C 1.52999 * 109.47070 * 185.05223 * 4 3 2 6 6 C 1.53000 * 109.46763 * 64.98594 * 5 4 3 7 7 C 1.52991 * 109.47064 * 184.98465 * 5 4 3 8 8 C 1.52997 * 109.47223 * 304.98657 * 5 4 3 9 9 S 1.65599 * 119.99883 * 180.02562 * 2 1 3 10 10 O 1.42097 * 106.40377 * 150.25812 * 9 2 1 11 11 O 1.42105 * 106.40368 * 17.33687 * 9 2 1 12 12 C 1.76202 * 107.21788 * 263.79865 * 9 2 1 13 13 C 1.37634 * 120.13152 * 246.02881 * 12 9 2 14 14 C 1.38615 * 120.25286 * 180.32067 * 13 12 9 15 15 C 1.38660 * 120.49681 * 359.67544 * 14 13 12 16 16 C 1.37597 * 120.24840 * 359.97438 * 15 14 13 17 17 C 1.40699 * 120.12429 * 65.72823 * 12 9 2 18 18 C 1.41389 * 120.24955 * 359.97438 * 17 12 9 19 19 H 1.08001 * 119.99585 * 31.24874 * 18 17 12 20 20 C 1.39949 * 120.00395 * 211.24874 * 18 17 12 21 21 N 1.30819 * 119.99907 * 23.79061 * 20 18 17 22 22 Si 1.86799 * 119.99695 * 203.79000 * 20 18 17 23 23 H 1.48499 * 109.47233 * 274.95230 * 22 20 18 24 24 H 1.48499 * 109.47563 * 34.95683 * 22 20 18 25 25 H 1.48508 * 109.46831 * 154.95137 * 22 20 18 26 26 H 1.09000 * 109.46759 * 270.00081 * 1 2 3 27 27 H 1.08998 * 109.47025 * 29.99399 * 1 2 3 28 28 H 1.08996 * 109.47304 * 149.99742 * 1 2 3 29 29 H 1.09000 * 109.46705 * 37.14636 * 3 2 1 30 30 H 1.08997 * 109.47134 * 157.14225 * 3 2 1 31 31 H 1.08997 * 109.47147 * 305.05535 * 4 3 2 32 32 H 1.09008 * 109.46892 * 65.05480 * 4 3 2 33 33 H 1.09003 * 109.47033 * 61.30869 * 6 5 4 34 34 H 1.09006 * 109.47216 * 181.30657 * 6 5 4 35 35 H 1.09002 * 109.47477 * 301.31052 * 6 5 4 36 36 H 1.09005 * 109.47430 * 60.00281 * 7 5 4 37 37 H 1.09002 * 109.47138 * 180.02562 * 7 5 4 38 38 H 1.09005 * 109.47536 * 300.00047 * 7 5 4 39 39 H 1.09006 * 109.47270 * 60.00343 * 8 5 4 40 40 H 1.09000 * 109.47034 * 179.97438 * 8 5 4 41 41 H 1.08993 * 109.47065 * 299.99935 * 8 5 4 42 42 H 1.08002 * 119.87411 * 0.02562 * 13 12 9 43 43 H 1.07990 * 119.74936 * 179.69884 * 14 13 12 44 44 H 1.07999 * 119.87410 * 180.02562 * 15 14 13 45 45 H 1.07996 * 120.12468 * 180.02562 * 16 15 14 46 46 H 0.96999 * 119.99831 * 3.18730 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.2972 1.8001 -1.4313 5 6 3.1686 3.0576 -1.4489 6 6 4.6002 2.6915 -1.0521 7 6 3.1673 3.6592 -2.8556 8 6 2.6098 4.0793 -0.4567 9 16 2.2930 -1.4341 -0.0006 10 8 3.5186 -1.1896 -0.6768 11 8 1.3667 -2.4321 -0.4073 12 6 2.7112 -1.7957 1.6724 13 6 4.0292 -1.8045 2.0687 14 6 4.3615 -2.0951 3.3827 15 6 3.3723 -2.3733 4.3136 16 6 2.0476 -2.3631 3.9415 17 6 1.6986 -2.0703 2.6099 18 6 0.3407 -2.0574 2.2160 19 1 0.0677 -2.3396 1.2099 20 6 -0.6494 -1.6790 3.1298 21 7 -0.3432 -0.9163 4.1475 22 14 -2.4083 -2.2630 2.8960 23 1 -3.1157 -1.3446 1.9679 24 1 -2.4031 -3.6346 2.3268 25 1 -3.1046 -2.2742 4.2077 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6698 1.9929 0.6206 30 1 3.1993 1.1098 0.3992 31 1 2.7443 1.0392 -2.0710 32 1 1.3002 2.0437 -1.7986 33 1 5.0065 1.9812 -1.7722 34 1 5.2158 3.5911 -1.0421 35 1 4.5983 2.2414 -0.0593 36 1 2.1474 3.9200 -3.1383 37 1 3.7885 4.5548 -2.8682 38 1 3.5655 2.9313 -3.5625 39 1 2.6108 3.6506 0.5456 40 1 3.2308 4.9749 -0.4689 41 1 1.5899 4.3400 -0.7393 42 1 4.8079 -1.5888 1.3520 43 1 5.3986 -2.1045 3.6836 44 1 3.6425 -2.5980 5.3348 45 1 1.2788 -2.5797 4.6683 46 1 0.5597 -0.5752 4.2436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601451446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:33 Heat of formation + Delta-G solvation = -99.662731 kcal Electronic energy + Delta-G solvation = -27410.017149 eV Core-core repulsion = 23810.616496 eV Total energy + Delta-G solvation = -3599.400653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.63489 -39.30820 -38.17419 -36.75921 -36.51906 -35.81264 -31.99205 -31.30772 -30.47352 -28.11867 -28.09010 -27.34437 -26.67778 -23.85835 -23.53783 -22.99319 -20.20376 -19.67824 -19.46090 -18.63498 -17.87132 -17.24611 -16.67284 -16.25009 -15.71992 -15.67140 -15.58786 -15.27089 -15.06734 -14.76947 -14.59080 -14.35275 -14.25382 -14.05593 -13.52699 -13.42286 -13.31853 -13.06338 -13.00078 -12.82508 -12.81652 -12.65452 -12.60479 -12.52062 -12.41094 -12.25731 -11.99369 -11.87237 -11.65602 -11.54737 -11.42151 -11.31660 -11.10925 -10.92027 -10.05615 -9.76027 -9.63017 -9.30975 -6.70490 -0.23713 0.40802 0.85148 1.50819 1.61565 1.81493 2.20450 2.26190 2.57047 2.93507 3.31674 3.63590 3.80588 3.88800 3.94697 4.07550 4.18580 4.30840 4.39123 4.46926 4.59480 4.60176 4.69400 4.75931 4.78828 4.79514 4.88034 4.92607 4.97371 5.08148 5.09942 5.12174 5.13622 5.17704 5.24311 5.29466 5.34593 5.42968 5.48152 5.54036 5.56889 5.59312 5.73849 5.82702 5.87427 6.00246 6.17502 6.57661 6.76706 7.92876 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.005345 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.596819 B = 5237.128430 C = 6096.110403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.992 5.992 3 C 0.122 3.878 4 C -0.124 4.124 5 C -0.066 4.066 6 C -0.148 4.148 7 C -0.137 4.137 8 C -0.143 4.143 9 S 2.716 3.284 10 O -1.002 7.002 11 O -1.002 7.002 12 C -0.800 4.800 13 C -0.005 4.005 14 C -0.259 4.259 15 C -0.055 4.055 16 C -0.232 4.232 17 C 0.148 3.852 18 C -0.544 4.544 19 H 0.106 0.894 20 C 0.022 3.978 21 N -0.791 5.791 22 Si 1.094 2.906 23 H -0.243 1.243 24 H -0.270 1.270 25 H -0.267 1.267 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.122 0.878 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 9.821 -6.320 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.829 5.829 3 C -0.003 4.003 4 C -0.164 4.164 5 C -0.067 4.067 6 C -0.205 4.205 7 C -0.194 4.194 8 C -0.201 4.201 9 S 2.813 3.187 10 O -0.992 6.992 11 O -0.992 6.992 12 C -0.894 4.894 13 C -0.024 4.024 14 C -0.279 4.279 15 C -0.074 4.074 16 C -0.252 4.252 17 C 0.143 3.857 18 C -0.571 4.571 19 H 0.123 0.877 20 C -0.199 4.199 21 N -0.412 5.412 22 Si 0.911 3.089 23 H -0.166 1.166 24 H -0.195 1.195 25 H -0.192 1.192 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.116 0.884 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.062 9.448 -6.365 11.392 hybrid contribution 1.898 -0.409 0.501 2.005 sum 1.836 9.039 -5.864 10.929 Atomic orbital electron populations 1.21729 0.77744 1.03569 1.02608 1.57069 1.15503 1.20506 1.89870 1.21528 0.95860 0.84557 0.98322 1.22077 1.00927 0.97293 0.96068 1.20510 0.94805 0.94355 0.97009 1.21974 0.96047 1.01464 1.01031 1.21834 1.02331 1.00651 0.94573 1.21942 1.01375 0.98361 0.98379 1.00558 0.71691 0.72531 0.73950 1.93418 1.46223 1.85829 1.73774 1.93412 1.64287 1.58582 1.82953 1.30262 1.01105 1.33217 1.24774 1.20653 0.93760 0.91551 0.96469 1.20887 0.99053 1.14399 0.93592 1.21214 0.92811 0.94397 0.98956 1.21379 0.96039 1.10556 0.97221 1.17341 0.92388 0.84695 0.91288 1.21468 0.91805 1.40465 1.03335 0.87670 1.28179 1.09896 0.91549 0.90238 1.70563 1.24740 1.19281 1.26614 0.83315 0.69068 0.78102 0.78425 1.16629 1.19513 1.19166 0.92799 0.88597 0.91339 0.89189 0.91457 0.93083 0.90292 0.93445 0.91209 0.93499 0.91938 0.91484 0.93234 0.93000 0.91584 0.91817 0.85996 0.85176 0.85496 0.88356 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.01 9.10 127.77 1.16 4.18 16 2 N -0.99 -36.84 3.17 -539.14 -1.71 -38.55 16 3 C 0.12 3.80 4.55 86.38 0.39 4.19 16 4 C -0.12 -3.28 4.58 30.59 0.14 -3.14 16 5 C -0.07 -1.42 0.80 -52.19 -0.04 -1.46 16 6 C -0.15 -3.45 8.26 71.98 0.59 -2.85 16 7 C -0.14 -2.44 8.47 71.98 0.61 -1.83 16 8 C -0.14 -2.68 7.99 71.98 0.57 -2.11 16 9 S 2.72 121.88 5.03 -56.49 -0.28 121.60 16 10 O -1.00 -45.57 16.13 -128.00 -2.06 -47.64 16 11 O -1.00 -49.99 14.17 -128.00 -1.81 -51.80 16 12 C -0.80 -38.68 5.97 22.73 0.14 -38.54 16 13 C 0.00 -0.21 9.53 22.22 0.21 0.01 16 14 C -0.26 -10.78 10.05 22.46 0.23 -10.55 16 15 C -0.06 -2.36 10.02 22.22 0.22 -2.14 16 16 C -0.23 -11.32 7.95 22.73 0.18 -11.14 16 17 C 0.15 7.51 5.17 -21.29 -0.11 7.40 16 18 C -0.54 -27.04 6.02 23.46 0.14 -26.90 16 19 H 0.11 5.35 4.70 -2.91 -0.01 5.34 16 20 C 0.02 1.01 4.51 85.26 0.38 1.39 16 21 N -0.79 -38.26 12.59 21.83 0.27 -37.99 16 22 Si 1.09 39.93 29.99 68.60 2.06 41.99 16 23 H -0.24 -7.80 7.11 99.48 0.71 -7.09 16 24 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 25 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 26 H 0.05 2.01 6.40 -2.39 -0.02 2.00 16 27 H 0.10 2.47 8.06 -2.39 -0.02 2.45 16 28 H 0.07 2.43 6.80 -2.39 -0.02 2.41 16 29 H 0.09 2.50 6.63 -2.39 -0.02 2.48 16 30 H 0.07 2.23 5.88 -2.39 -0.01 2.22 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.83 8.13 -2.38 -0.02 1.81 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.05 1.20 6.40 -2.39 -0.02 1.19 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.05 1.06 6.46 -2.38 -0.02 1.04 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.12 5.02 7.32 -2.91 -0.02 5.00 16 43 H 0.13 4.48 8.06 -2.92 -0.02 4.46 16 44 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 45 H 0.10 4.88 6.90 -2.91 -0.02 4.86 16 46 H 0.29 14.54 6.71 -92.71 -0.62 13.92 16 Total: -1.00 -60.64 367.04 2.40 -58.25 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: 1.11 Total: 37.64 kcal Atomic # 6 Polarization: -88.32 SS G_CDS: 4.83 Total: -83.50 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -1.43 Total: -76.54 kcal Atomic # 8 Polarization: -95.56 SS G_CDS: -3.88 Total: -99.44 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.06 Total: 41.99 kcal Atomic # 16 Polarization: 121.88 SS G_CDS: -0.28 Total: 121.60 kcal Total: -60.64 2.40 -58.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601451446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.418 kcal (2) G-P(sol) polarization free energy of solvation -60.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds