Wall clock time and date at job start Tue Mar 31 2020 15:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47257 * 2 1 4 4 C 1.53002 * 109.47565 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47173 * 176.55796 * 4 3 2 6 6 C 1.34779 * 119.99938 * 84.92283 * 5 4 3 7 7 O 1.21275 * 119.99647 * 179.97438 * 6 5 4 8 8 C 1.50696 * 120.00060 * 359.97438 * 6 5 4 9 9 S 1.80993 * 109.47097 * 179.97438 * 8 6 5 10 10 C 1.76197 * 100.00248 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99643 * 359.97438 * 10 9 8 12 12 C 1.38804 * 120.00267 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00061 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99715 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47249 * 90.00093 * 14 12 10 16 16 H 1.48509 * 109.46797 * 209.99868 * 14 12 10 17 17 H 1.48503 * 109.47306 * 329.99376 * 14 12 10 18 18 C 1.46497 * 119.99794 * 264.92115 * 5 4 3 19 19 H 1.09001 * 109.47071 * 174.99991 * 18 5 4 20 20 C 1.53005 * 109.47179 * 55.00465 * 18 5 4 21 21 C 1.50704 * 109.47272 * 295.00406 * 18 5 4 22 22 C 1.34512 * 125.79027 * 225.51106 * 21 18 5 23 23 C 1.41376 * 106.84266 * 180.02562 * 22 21 18 24 24 C 1.34513 * 106.83855 * 359.97438 * 23 22 21 25 25 C 1.50710 * 125.78843 * 180.02562 * 24 23 22 26 26 O 1.34298 * 108.42362 * 359.73896 * 24 23 22 27 27 H 1.09012 * 109.47010 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47362 * 299.99392 * 1 2 3 29 29 H 1.08996 * 109.47201 * 60.00242 * 1 2 3 30 30 H 1.09008 * 109.46862 * 240.00148 * 2 1 3 31 31 H 1.09003 * 109.47212 * 120.00469 * 2 1 3 32 32 H 1.09005 * 109.46969 * 59.99757 * 3 2 1 33 33 H 1.09003 * 109.47392 * 300.00359 * 3 2 1 34 34 H 1.08994 * 109.46798 * 56.55542 * 4 3 2 35 35 H 1.08997 * 109.46589 * 296.55571 * 4 3 2 36 36 H 1.08998 * 109.47509 * 300.00487 * 8 6 5 37 37 H 1.09005 * 109.47065 * 60.00128 * 8 6 5 38 38 H 0.96994 * 120.00107 * 180.02562 * 13 12 10 39 39 H 1.08998 * 109.47062 * 60.00175 * 20 18 5 40 40 H 1.09002 * 109.46906 * 179.97438 * 20 18 5 41 41 H 1.09001 * 109.46732 * 299.99734 * 20 18 5 42 42 H 1.08002 * 126.57717 * 359.96030 * 22 21 18 43 43 H 1.08000 * 126.58298 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.46893 * 90.00115 * 25 24 23 45 45 H 1.09000 * 109.46989 * 209.99946 * 25 24 23 46 46 H 1.08994 * 109.46758 * 329.99527 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8213 -0.0836 6 6 4.1859 3.5595 1.0368 7 8 4.5906 4.7007 0.9682 8 6 3.8259 2.9668 2.3748 9 16 4.1045 4.1960 3.6737 10 6 3.6183 3.2632 5.0872 11 1 3.2771 2.2450 4.9710 12 6 3.6736 3.8367 6.3500 13 7 3.3099 3.1399 7.4058 14 14 4.2630 5.5978 6.5508 15 1 3.1044 6.5217 6.4540 16 1 4.9116 5.7545 7.8775 17 1 5.2417 5.9174 5.4806 18 6 4.4077 3.3975 -1.3843 19 1 4.6632 4.4497 -1.2587 20 6 3.2151 3.2723 -2.3346 21 6 5.5885 2.6590 -1.9601 22 6 6.6698 3.2241 -2.5264 23 6 7.5216 2.1689 -2.9260 24 6 6.9101 1.0220 -2.5794 25 6 7.4475 -0.3673 -2.8081 26 8 5.7425 1.3251 -1.9892 27 1 -0.3634 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.8763 -0.8584 35 1 3.9337 0.9830 0.9184 36 1 2.7764 2.6727 2.3714 37 1 4.4478 2.0917 2.5637 38 1 3.3482 3.5409 8.2882 39 1 2.3611 3.8065 -1.9182 40 1 3.4750 3.7015 -3.3023 41 1 2.9596 2.2202 -2.4602 42 1 6.8518 4.2812 -2.6528 43 1 8.4798 2.2651 -3.4149 44 1 8.0419 -0.6732 -1.9473 45 1 6.6171 -1.0607 -2.9412 46 1 8.0720 -0.3727 -3.7014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603619041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:52 Heat of formation + Delta-G solvation = -39.626308 kcal Electronic energy + Delta-G solvation = -25898.533868 eV Core-core repulsion = 22301.736591 eV Total energy + Delta-G solvation = -3596.797278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.74223 -39.83406 -36.70144 -34.84489 -33.31461 -32.73605 -32.43034 -31.08905 -29.02853 -28.65130 -26.59845 -25.60798 -23.94073 -22.89313 -21.81104 -21.19882 -20.39934 -19.26668 -17.68508 -17.10424 -16.77609 -16.34674 -15.67447 -15.33004 -15.16734 -14.95385 -14.35918 -14.06455 -13.87384 -13.59714 -13.44015 -13.38667 -13.20708 -13.08691 -12.93433 -12.85397 -12.76581 -12.66564 -12.16177 -12.08112 -11.86517 -11.67547 -11.40576 -11.29332 -11.26173 -11.01684 -10.98323 -10.59578 -10.56139 -9.96994 -9.85083 -9.50617 -8.99585 -8.73506 -8.48351 -8.39717 -6.91089 -6.28232 -3.99802 1.55704 2.44398 2.64750 2.76691 2.96140 3.19600 3.33587 3.51225 3.59513 4.33219 4.35587 4.53707 4.71354 4.77951 4.79265 4.91003 4.95841 5.01241 5.03313 5.10374 5.11282 5.17803 5.19311 5.26325 5.38655 5.44157 5.48888 5.54120 5.62464 5.62898 5.70709 5.73854 5.78715 5.82929 5.87944 5.92494 5.97937 6.06946 6.10151 6.13658 6.30004 6.40432 6.54199 7.07154 7.40868 7.94889 8.38884 8.42439 9.18074 10.81031 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.003652 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.066490 B = 7665.878119 C = 8825.377315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.145 4.145 4 C 0.109 3.891 5 N -0.612 5.612 6 C 0.536 3.464 7 O -0.517 6.517 8 C -0.120 4.120 9 S -0.144 6.144 10 C -0.520 4.520 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.881 5.881 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.222 3.778 19 H 0.128 0.872 20 C -0.160 4.160 21 C -0.017 4.017 22 C -0.198 4.198 23 C -0.211 4.211 24 C -0.019 4.019 25 C -0.072 4.072 26 O -0.168 6.168 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.271 0.729 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 -7.600 -23.788 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.184 4.184 4 C -0.014 4.014 5 N -0.346 5.346 6 C 0.324 3.676 7 O -0.392 6.392 8 C -0.270 4.270 9 S 0.083 5.917 10 C -0.667 4.667 11 H 0.106 0.894 12 C -0.112 4.112 13 N -0.517 5.517 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C 0.118 3.882 19 H 0.146 0.854 20 C -0.218 4.218 21 C -0.068 4.068 22 C -0.218 4.218 23 C -0.230 4.230 24 C -0.069 4.069 25 C -0.129 4.129 26 O -0.064 6.064 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.121 -6.123 -23.554 24.429 hybrid contribution -0.086 -0.589 0.407 0.721 sum 2.035 -6.712 -23.147 24.186 Atomic orbital electron populations 1.21756 0.95687 1.01512 1.01969 1.21442 0.96092 0.96282 1.02119 1.22228 0.95292 0.97518 1.03341 1.21688 0.94015 0.82089 1.03654 1.48034 1.66639 1.14409 1.05526 1.20367 0.76434 0.85680 0.85098 1.90680 1.44526 1.17748 1.86219 1.23343 1.05161 1.03947 0.94558 1.84775 1.87457 1.20113 0.99368 1.22300 1.50790 1.02437 0.91190 0.89404 1.24701 0.93682 0.98222 0.94637 1.69935 1.45860 1.37211 0.98713 0.86747 0.81051 0.84640 0.79497 1.19203 1.19949 1.15920 1.19560 0.89055 0.97316 0.82311 0.85437 1.22250 0.97413 1.03114 0.99000 1.22826 0.99444 0.80423 1.04138 1.21570 0.94424 1.00585 1.05179 1.21528 1.02120 0.91532 1.07863 1.22470 0.86270 0.97546 1.00655 1.20283 1.00871 0.88713 1.03006 1.83962 1.35932 1.24288 1.62254 0.92837 0.92400 0.92949 0.92129 0.91607 0.91054 0.91192 0.89654 0.90168 0.88318 0.88564 0.91956 0.90920 0.91097 0.91580 0.83435 0.83643 0.90120 0.90657 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.15 -1.55 5.25 -26.73 -0.14 -1.69 16 4 C 0.11 1.28 4.20 -4.04 -0.02 1.26 16 5 N -0.61 -8.70 2.38 -167.43 -0.40 -9.10 16 6 C 0.54 9.92 7.66 -10.99 -0.08 9.83 16 7 O -0.52 -11.25 15.20 5.56 0.08 -11.16 16 8 C -0.12 -2.39 4.76 36.00 0.17 -2.22 16 9 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 10 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 11 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 12 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 13 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 14 Si 0.86 21.90 27.74 -169.99 -4.71 17.19 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 18 C 0.22 2.79 3.09 -69.08 -0.21 2.57 16 19 H 0.13 1.76 6.89 -51.93 -0.36 1.40 16 20 C -0.16 -1.54 8.00 37.16 0.30 -1.24 16 21 C -0.02 -0.22 6.03 -35.62 -0.21 -0.43 16 22 C -0.20 -2.40 10.79 -39.71 -0.43 -2.83 16 23 C -0.21 -2.31 10.81 -39.71 -0.43 -2.74 16 24 C -0.02 -0.21 7.32 -35.62 -0.26 -0.47 16 25 C -0.07 -0.49 10.42 36.01 0.38 -0.12 16 26 O -0.17 -2.08 8.53 5.72 0.05 -2.03 16 27 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.88 6.59 -51.93 -0.34 0.54 16 33 H 0.07 0.70 5.94 -51.93 -0.31 0.39 16 34 H 0.09 0.93 5.81 -51.93 -0.30 0.63 16 35 H 0.08 0.99 6.65 -51.93 -0.35 0.64 16 36 H 0.10 1.84 6.53 -51.92 -0.34 1.50 16 37 H 0.10 1.84 7.41 -51.91 -0.38 1.45 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.60 6.65 -51.93 -0.35 0.26 16 42 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -33.89 383.15 -8.31 -42.20 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.36 Total: 0.99 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.52 Total: -12.32 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.38 Total: -34.97 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.13 Total: -13.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.89 -8.31 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603619041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.572 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds