Wall clock time and date at job start Tue Mar 31 2020 15:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47257 * 2 1 4 4 C 1.53002 * 109.47565 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47173 * 176.55796 * 4 3 2 6 6 C 1.34779 * 119.99938 * 84.92283 * 5 4 3 7 7 O 1.21275 * 119.99647 * 179.97438 * 6 5 4 8 8 C 1.50696 * 120.00060 * 359.97438 * 6 5 4 9 9 S 1.80993 * 109.47097 * 179.97438 * 8 6 5 10 10 C 1.76197 * 100.00248 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99643 * 359.97438 * 10 9 8 12 12 C 1.38804 * 120.00267 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00061 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99715 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47249 * 90.00093 * 14 12 10 16 16 H 1.48509 * 109.46797 * 209.99868 * 14 12 10 17 17 H 1.48503 * 109.47306 * 329.99376 * 14 12 10 18 18 C 1.46497 * 119.99794 * 264.92115 * 5 4 3 19 19 H 1.09001 * 109.47071 * 174.99991 * 18 5 4 20 20 C 1.53005 * 109.47179 * 55.00465 * 18 5 4 21 21 C 1.50704 * 109.47272 * 295.00406 * 18 5 4 22 22 C 1.34512 * 125.79027 * 225.51106 * 21 18 5 23 23 C 1.41376 * 106.84266 * 180.02562 * 22 21 18 24 24 C 1.34513 * 106.83855 * 359.97438 * 23 22 21 25 25 C 1.50710 * 125.78843 * 180.02562 * 24 23 22 26 26 O 1.34298 * 108.42362 * 359.73896 * 24 23 22 27 27 H 1.09012 * 109.47010 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47362 * 299.99392 * 1 2 3 29 29 H 1.08996 * 109.47201 * 60.00242 * 1 2 3 30 30 H 1.09008 * 109.46862 * 240.00148 * 2 1 3 31 31 H 1.09003 * 109.47212 * 120.00469 * 2 1 3 32 32 H 1.09005 * 109.46969 * 59.99757 * 3 2 1 33 33 H 1.09003 * 109.47392 * 300.00359 * 3 2 1 34 34 H 1.08994 * 109.46798 * 56.55542 * 4 3 2 35 35 H 1.08997 * 109.46589 * 296.55571 * 4 3 2 36 36 H 1.08998 * 109.47509 * 300.00487 * 8 6 5 37 37 H 1.09005 * 109.47065 * 60.00128 * 8 6 5 38 38 H 0.96994 * 120.00107 * 180.02562 * 13 12 10 39 39 H 1.08998 * 109.47062 * 60.00175 * 20 18 5 40 40 H 1.09002 * 109.46906 * 179.97438 * 20 18 5 41 41 H 1.09001 * 109.46732 * 299.99734 * 20 18 5 42 42 H 1.08002 * 126.57717 * 359.96030 * 22 21 18 43 43 H 1.08000 * 126.58298 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.46893 * 90.00115 * 25 24 23 45 45 H 1.09000 * 109.46989 * 209.99946 * 25 24 23 46 46 H 1.08994 * 109.46758 * 329.99527 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8213 -0.0836 6 6 4.1859 3.5595 1.0368 7 8 4.5906 4.7007 0.9682 8 6 3.8259 2.9668 2.3748 9 16 4.1045 4.1960 3.6737 10 6 3.6183 3.2632 5.0872 11 1 3.2771 2.2450 4.9710 12 6 3.6736 3.8367 6.3500 13 7 3.3099 3.1399 7.4058 14 14 4.2630 5.5978 6.5508 15 1 3.1044 6.5217 6.4540 16 1 4.9116 5.7545 7.8775 17 1 5.2417 5.9174 5.4806 18 6 4.4077 3.3975 -1.3843 19 1 4.6632 4.4497 -1.2587 20 6 3.2151 3.2723 -2.3346 21 6 5.5885 2.6590 -1.9601 22 6 6.6698 3.2241 -2.5264 23 6 7.5216 2.1689 -2.9260 24 6 6.9101 1.0220 -2.5794 25 6 7.4475 -0.3673 -2.8081 26 8 5.7425 1.3251 -1.9892 27 1 -0.3634 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.8763 -0.8584 35 1 3.9337 0.9830 0.9184 36 1 2.7764 2.6727 2.3714 37 1 4.4478 2.0917 2.5637 38 1 3.3482 3.5409 8.2882 39 1 2.3611 3.8065 -1.9182 40 1 3.4750 3.7015 -3.3023 41 1 2.9596 2.2202 -2.4602 42 1 6.8518 4.2812 -2.6528 43 1 8.4798 2.2651 -3.4149 44 1 8.0419 -0.6732 -1.9473 45 1 6.6171 -1.0607 -2.9412 46 1 8.0720 -0.3727 -3.7014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603619041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:51 Heat of formation + Delta-G solvation = -58.389661 kcal Electronic energy + Delta-G solvation = -25899.347508 eV Core-core repulsion = 22301.736591 eV Total energy + Delta-G solvation = -3597.610918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.61978 -41.15851 -37.93107 -35.73230 -34.68830 -34.17390 -33.72353 -31.96218 -30.32457 -29.72260 -27.87128 -27.34452 -24.86911 -23.91310 -22.69035 -22.02181 -21.39885 -20.53761 -19.62182 -18.46581 -17.82712 -17.28092 -17.14440 -16.82726 -16.49350 -16.09383 -15.84694 -15.40761 -14.97823 -14.82640 -14.67431 -14.48815 -14.10750 -14.03178 -13.89536 -13.71841 -13.68089 -13.62685 -13.42868 -13.32958 -13.03467 -12.91636 -12.70751 -12.63056 -12.49415 -12.26460 -12.17162 -11.88686 -11.81761 -11.42336 -11.18167 -11.00651 -10.83979 -10.56179 -9.92856 -9.25536 -9.02683 -8.52832 -6.24279 0.64991 0.95309 1.30040 1.38952 1.42612 1.50171 1.64096 1.89975 2.04822 2.23776 2.65130 2.85384 3.37776 3.57591 3.84683 3.91515 3.95342 4.03321 4.11207 4.17060 4.20963 4.23313 4.31997 4.37554 4.55290 4.60730 4.62161 4.72070 4.73310 4.76472 4.81315 4.87062 4.90488 4.96161 5.00505 5.10142 5.15386 5.26941 5.28701 5.33490 5.45273 5.49521 5.61311 5.69492 6.09296 6.10276 6.21539 6.92064 6.96415 8.59692 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.003652 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.066490 B = 7665.878119 C = 8825.377315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.139 4.139 4 C 0.106 3.894 5 N -0.598 5.598 6 C 0.538 3.462 7 O -0.556 6.556 8 C -0.105 4.105 9 S -0.172 6.172 10 C -0.528 4.528 11 H 0.061 0.939 12 C 0.048 3.952 13 N -0.916 5.916 14 Si 0.913 3.087 15 H -0.261 1.261 16 H -0.258 1.258 17 H -0.238 1.238 18 C 0.220 3.780 19 H 0.111 0.889 20 C -0.151 4.151 21 C -0.037 4.037 22 C -0.208 4.208 23 C -0.226 4.226 24 C -0.022 4.022 25 C -0.072 4.072 26 O -0.177 6.177 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.277 0.723 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.154 0.846 43 H 0.166 0.834 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 -8.341 -25.992 27.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.178 4.178 4 C -0.016 4.016 5 N -0.330 5.330 6 C 0.326 3.674 7 O -0.434 6.434 8 C -0.255 4.255 9 S 0.055 5.945 10 C -0.676 4.676 11 H 0.079 0.921 12 C -0.158 4.158 13 N -0.554 5.554 14 Si 0.735 3.265 15 H -0.185 1.185 16 H -0.182 1.182 17 H -0.162 1.162 18 C 0.116 3.884 19 H 0.129 0.871 20 C -0.209 4.209 21 C -0.087 4.087 22 C -0.228 4.228 23 C -0.244 4.244 24 C -0.072 4.072 25 C -0.128 4.128 26 O -0.075 6.075 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.171 0.829 43 H 0.184 0.816 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.490 -6.905 -25.788 26.813 hybrid contribution -0.185 -0.509 0.949 1.092 sum 2.305 -7.414 -24.840 26.025 Atomic orbital electron populations 1.21758 0.95375 1.02104 1.01714 1.21427 0.96320 0.95159 1.02696 1.22167 0.94125 0.98584 1.02877 1.21872 0.94906 0.80670 1.04105 1.48017 1.65053 1.14845 1.05114 1.20041 0.76483 0.85397 0.85510 1.90664 1.46716 1.19289 1.86721 1.23297 1.06249 1.02321 0.93679 1.84663 1.87547 1.22242 1.00096 1.22419 1.50547 1.01722 0.92881 0.92061 1.25535 0.93782 1.02059 0.94388 1.70009 1.46910 1.39049 0.99406 0.85891 0.80756 0.79936 0.79944 1.18544 1.18207 1.16189 1.19682 0.90570 0.96408 0.81699 0.87080 1.22203 0.95913 1.03903 0.98869 1.22740 0.99766 0.80843 1.05393 1.21858 0.94554 1.01397 1.04980 1.21850 1.02972 0.91250 1.08376 1.23251 0.85415 0.99238 0.99250 1.20478 1.01490 0.86585 1.04248 1.83936 1.36865 1.23967 1.62697 0.91858 0.93808 0.92073 0.90346 0.92240 0.93100 0.90053 0.88019 0.90769 0.87044 0.87705 0.91315 0.90912 0.89407 0.90619 0.82858 0.81633 0.89514 0.89641 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.91 71.98 0.71 -1.76 16 2 C -0.12 -1.97 5.93 30.59 0.18 -1.78 16 3 C -0.14 -2.77 5.25 30.59 0.16 -2.61 16 4 C 0.11 2.37 4.20 86.38 0.36 2.73 16 5 N -0.60 -16.59 2.38 -802.01 -1.90 -18.49 16 6 C 0.54 19.93 7.66 87.66 0.67 20.60 16 7 O -0.56 -24.47 15.20 -3.01 -0.05 -24.52 16 8 C -0.10 -4.21 4.76 71.23 0.34 -3.87 16 9 S -0.17 -8.91 18.55 -56.49 -1.05 -9.96 16 10 C -0.53 -31.17 10.04 67.96 0.68 -30.49 16 11 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 12 C 0.05 2.84 5.50 84.86 0.47 3.30 16 13 N -0.92 -56.08 13.97 21.65 0.30 -55.78 16 14 Si 0.91 45.38 27.74 68.60 1.90 47.28 16 15 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 18 C 0.22 5.34 3.09 44.25 0.14 5.48 16 19 H 0.11 3.09 6.89 -2.39 -0.02 3.07 16 20 C -0.15 -2.62 8.00 71.98 0.58 -2.04 16 21 C -0.04 -0.89 6.03 24.83 0.15 -0.74 16 22 C -0.21 -4.84 10.79 22.19 0.24 -4.60 16 23 C -0.23 -4.53 10.81 22.19 0.24 -4.29 16 24 C -0.02 -0.42 7.32 24.84 0.18 -0.24 16 25 C -0.07 -0.77 10.42 71.24 0.74 -0.03 16 26 O -0.18 -4.08 8.53 -2.44 -0.02 -4.10 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.23 6.59 -2.38 -0.02 1.22 16 33 H 0.08 1.44 5.94 -2.39 -0.01 1.43 16 34 H 0.10 1.99 5.81 -2.39 -0.01 1.98 16 35 H 0.07 1.76 6.65 -2.39 -0.02 1.74 16 36 H 0.11 4.18 6.53 -2.40 -0.02 4.17 16 37 H 0.10 4.02 7.41 -2.39 -0.02 4.00 16 38 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.07 1.27 7.91 -2.39 -0.02 1.25 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.17 6.65 -2.39 -0.02 1.16 16 42 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -73.71 383.15 5.95 -67.75 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.92 Total: 18.15 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 5.84 Total: -20.33 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -1.60 Total: -74.28 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.07 Total: -28.62 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.90 Total: 47.28 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -73.71 5.95 -67.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603619041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.363 kcal (2) G-P(sol) polarization free energy of solvation -73.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds