Wall clock time and date at job start Tue Mar 31 2020 15:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.53006 * 109.46623 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99934 * 270.00562 * 5 4 3 7 7 O 1.21280 * 119.99979 * 179.97438 * 6 5 4 8 8 C 1.50696 * 119.99774 * 359.97438 * 6 5 4 9 9 S 1.81007 * 109.47016 * 180.02562 * 8 6 5 10 10 C 1.76195 * 100.00195 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99674 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00153 * 180.02562 * 10 9 8 13 13 N 1.31639 * 119.99925 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00282 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47122 * 59.99955 * 14 12 10 16 16 H 1.48508 * 109.47427 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47187 * 300.00050 * 14 12 10 18 18 C 1.46495 * 120.00074 * 89.99772 * 5 4 3 19 19 H 1.09002 * 109.47515 * 179.97438 * 18 5 4 20 20 C 1.53000 * 109.47459 * 300.00394 * 18 5 4 21 21 C 1.50701 * 109.47131 * 60.00128 * 18 5 4 22 22 C 1.34508 * 125.78959 * 139.71150 * 21 18 5 23 23 C 1.41387 * 106.84293 * 179.89177 * 22 21 18 24 24 C 1.34514 * 106.83683 * 0.37506 * 23 22 21 25 25 C 1.50700 * 125.79057 * 179.74562 * 24 23 22 26 26 O 1.34307 * 108.42419 * 359.77342 * 24 23 22 27 27 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 28 28 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 29 29 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 31 31 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 32 32 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 33 33 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 34 34 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 35 35 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 36 36 H 1.09000 * 109.47633 * 299.99863 * 8 6 5 37 37 H 1.09002 * 109.47195 * 60.01057 * 8 6 5 38 38 H 0.96996 * 120.00046 * 180.02562 * 13 12 10 39 39 H 1.09002 * 109.47103 * 59.99324 * 20 18 5 40 40 H 1.08994 * 109.47249 * 180.02562 * 20 18 5 41 41 H 1.09005 * 109.46767 * 299.99960 * 20 18 5 42 42 H 1.08002 * 126.58178 * 0.03483 * 22 21 18 43 43 H 1.07996 * 126.58622 * 180.11976 * 23 22 21 44 44 H 1.09000 * 109.47307 * 180.02562 * 25 24 23 45 45 H 1.08992 * 109.47271 * 300.00281 * 25 24 23 46 46 H 1.09005 * 109.46993 * 60.00383 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2835 3.4583 -1.1675 7 8 4.6874 4.6019 -1.1680 8 6 4.0333 2.7469 -2.4722 9 16 4.4264 3.8548 -3.8485 10 6 4.0533 2.7981 -5.2082 11 1 3.6982 1.7939 -5.0300 12 6 4.2169 3.2560 -6.5082 13 7 4.6512 4.4795 -6.7254 14 14 3.8220 2.1355 -7.9497 15 1 2.3936 1.7340 -7.8878 16 1 4.0782 2.8570 -9.2222 17 1 4.6797 0.9250 -7.8851 18 6 4.3021 3.5150 1.2684 19 1 4.6599 4.5251 1.0688 20 6 3.0008 3.5834 2.0702 21 6 5.3405 2.7620 2.0596 22 6 6.3356 3.3137 2.7768 23 6 7.0649 2.2482 3.3529 24 6 6.4766 1.1088 2.9464 25 6 6.9150 -0.2870 3.3079 26 8 5.4327 1.4261 2.1632 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9330 0.9287 0.8908 35 1 3.9338 0.9284 -0.8891 36 1 4.6638 1.8596 -2.5291 37 1 2.9854 2.4525 -2.5304 38 1 4.7652 4.7996 -7.6339 39 1 2.6434 2.5731 2.2697 40 1 3.1820 4.0982 3.0136 41 1 2.2497 4.1280 1.4979 42 1 6.5375 4.3684 2.8926 43 1 7.9307 2.3326 3.9928 44 1 6.2514 -1.0104 2.8340 45 1 7.9354 -0.4487 2.9607 46 1 6.8753 -0.4114 4.3900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603619043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:54 Heat of formation + Delta-G solvation = -37.814576 kcal Electronic energy + Delta-G solvation = -25873.673080 eV Core-core repulsion = 22276.954364 eV Total energy + Delta-G solvation = -3596.718715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.72334 -39.72252 -36.62777 -34.78555 -33.30549 -32.68877 -32.41630 -31.03273 -28.98047 -28.54075 -26.58260 -25.47644 -23.87555 -22.87169 -21.75556 -21.16977 -20.35112 -19.20744 -17.68094 -16.94785 -16.77351 -16.31894 -15.65755 -15.24035 -15.09917 -14.79424 -14.29600 -14.08900 -13.85074 -13.56804 -13.37893 -13.30120 -13.19686 -13.11936 -12.93082 -12.76989 -12.72992 -12.45353 -12.11590 -11.96657 -11.83408 -11.61772 -11.40855 -11.26062 -11.04397 -11.03170 -10.95857 -10.75473 -10.50069 -9.94145 -9.80624 -9.37281 -9.04725 -8.63829 -8.36522 -8.21865 -6.48857 -6.20356 -3.90924 1.59229 2.48889 2.69499 2.95512 3.06867 3.24110 3.26293 3.29685 3.60179 4.21375 4.39336 4.64557 4.77075 4.80304 4.91997 4.97933 5.03359 5.07285 5.09167 5.14715 5.19007 5.19571 5.22501 5.41349 5.48515 5.52807 5.55561 5.57506 5.66363 5.68255 5.71397 5.79668 5.82825 5.89172 5.92521 5.96006 6.05298 6.12808 6.13916 6.16313 6.33296 6.43305 6.61716 7.10741 7.51062 7.60487 8.36205 8.51896 9.24761 10.87035 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.003424 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.359369 B = 8175.136354 C = 9057.453427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.146 4.146 4 C 0.107 3.893 5 N -0.613 5.613 6 C 0.537 3.463 7 O -0.515 6.515 8 C -0.148 4.148 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.221 3.779 19 H 0.128 0.872 20 C -0.161 4.161 21 C -0.015 4.015 22 C -0.200 4.200 23 C -0.211 4.211 24 C -0.022 4.022 25 C -0.072 4.072 26 O -0.167 6.167 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.269 0.731 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 -9.976 22.255 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.184 4.184 4 C -0.016 4.016 5 N -0.348 5.348 6 C 0.325 3.675 7 O -0.389 6.389 8 C -0.299 4.299 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.117 3.883 19 H 0.146 0.854 20 C -0.219 4.219 21 C -0.066 4.066 22 C -0.219 4.219 23 C -0.230 4.230 24 C -0.072 4.072 25 C -0.129 4.129 26 O -0.064 6.064 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.674 -8.336 21.954 23.543 hybrid contribution -0.503 -1.938 -0.818 2.163 sum -2.177 -10.274 21.136 23.601 Atomic orbital electron populations 1.21755 0.95756 1.01448 1.01921 1.21449 0.96009 0.96437 1.02083 1.22261 0.95501 0.97348 1.03301 1.21740 0.93922 0.82179 1.03791 1.48045 1.67384 1.14649 1.04720 1.20410 0.75980 0.86486 0.84575 1.90685 1.44014 1.17540 1.86704 1.23566 1.04845 1.04471 0.96985 1.85381 1.86867 1.17885 0.93293 1.22811 1.51799 1.01477 0.92206 0.91014 1.24980 0.94663 0.95538 0.98331 1.70011 1.42874 1.15692 1.21724 0.86239 0.78960 0.80065 0.80331 1.19929 1.20809 1.19939 1.19566 0.91496 0.95673 0.81586 0.85431 1.22303 0.96446 1.02990 1.00160 1.22834 1.00654 0.80411 1.02671 1.21558 0.97008 1.00590 1.02778 1.21507 1.03586 0.91544 1.06361 1.22479 0.90252 0.97484 0.96962 1.20279 1.01884 0.88598 1.02115 1.84001 1.43071 1.24004 1.55281 0.92938 0.92487 0.92882 0.91699 0.92120 0.91083 0.91189 0.89569 0.90077 0.89317 0.89093 0.92146 0.91523 0.91193 0.90915 0.83411 0.83661 0.90669 0.89802 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.14 5.93 -26.73 -0.16 -1.30 16 3 C -0.15 -1.59 5.26 -26.73 -0.14 -1.73 16 4 C 0.11 1.31 4.54 -4.04 -0.02 1.30 16 5 N -0.61 -9.16 2.39 -167.43 -0.40 -9.56 16 6 C 0.54 10.44 7.69 -10.98 -0.08 10.36 16 7 O -0.52 -11.80 15.19 5.56 0.08 -11.72 16 8 C -0.15 -3.08 4.71 36.00 0.17 -2.91 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 14 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.22 2.92 3.11 -69.08 -0.21 2.71 16 19 H 0.13 1.86 6.89 -51.93 -0.36 1.51 16 20 C -0.16 -1.66 8.12 37.16 0.30 -1.36 16 21 C -0.01 -0.19 6.06 -35.63 -0.22 -0.41 16 22 C -0.20 -2.45 10.80 -39.70 -0.43 -2.88 16 23 C -0.21 -2.33 10.81 -39.70 -0.43 -2.76 16 24 C -0.02 -0.24 7.32 -35.62 -0.26 -0.50 16 25 C -0.07 -0.50 10.42 36.01 0.38 -0.13 16 26 O -0.17 -2.11 8.03 5.69 0.05 -2.06 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.72 5.44 -51.93 -0.28 0.44 16 33 H 0.07 0.88 7.22 -51.93 -0.38 0.50 16 34 H 0.09 1.00 5.41 -51.93 -0.28 0.71 16 35 H 0.08 1.04 6.44 -51.93 -0.33 0.70 16 36 H 0.09 1.75 7.40 -51.92 -0.38 1.36 16 37 H 0.09 1.75 7.19 -51.92 -0.37 1.38 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.07 0.64 6.17 -51.93 -0.32 0.32 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -34.19 385.77 -8.82 -43.02 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.33 Total: 1.02 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.54 Total: -13.55 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.33 Total: -35.09 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.13 Total: -13.78 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.19 -8.82 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603619043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.202 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds