Wall clock time and date at job start Tue Mar 31 2020 15:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.52997 * 109.47298 * 59.99877 * 4 2 1 6 6 N 1.46495 * 109.47449 * 179.97438 * 5 4 2 7 7 S 1.65599 * 120.00307 * 165.00021 * 6 5 4 8 8 O 1.42102 * 104.28083 * 181.07207 * 7 6 5 9 9 O 1.42105 * 104.27676 * 308.93318 * 7 6 5 10 10 C 1.81402 * 104.44922 * 65.00029 * 7 6 5 11 11 C 1.52999 * 109.47409 * 180.02562 * 10 7 6 12 12 C 1.50695 * 109.47464 * 180.02562 * 11 10 7 13 13 H 1.08003 * 119.99833 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00252 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99825 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00051 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47143 * 90.00045 * 16 14 12 18 18 H 1.48504 * 109.46991 * 209.99996 * 16 14 12 19 19 H 1.48499 * 109.46904 * 330.00072 * 16 14 12 20 20 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 21 21 C 1.38237 * 119.99761 * 300.00365 * 20 2 1 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 2 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00191 * 119.97467 * 20 2 1 26 26 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 27 27 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 28 28 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 31 31 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 32 32 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 34 34 H 1.08998 * 109.47349 * 300.00486 * 5 4 2 35 35 H 1.09007 * 109.46746 * 60.00319 * 5 4 2 36 36 H 0.97001 * 120.00079 * 345.00319 * 6 5 4 37 37 H 1.09002 * 109.47043 * 300.00632 * 10 7 6 38 38 H 1.09003 * 109.46538 * 60.00187 * 10 7 6 39 39 H 1.09000 * 109.46953 * 300.00377 * 11 10 7 40 40 H 1.08997 * 109.46860 * 59.99901 * 11 10 7 41 41 H 0.97000 * 120.00001 * 179.97438 * 15 14 12 42 42 H 1.08005 * 120.00088 * 359.96779 * 21 20 2 43 43 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 46 46 H 1.07999 * 119.99990 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4985 6 7 2.0187 -0.6902 -3.6946 7 16 1.3389 -0.3714 -5.1706 8 8 2.0347 -1.2249 -6.0687 9 8 -0.0575 -0.5194 -4.9525 10 6 1.7520 1.3652 -5.4936 11 6 1.1714 1.7846 -6.8456 12 6 1.5151 3.2270 -7.1142 13 1 2.0905 3.7884 -6.3930 14 6 1.0950 3.8302 -8.2807 15 7 0.3948 3.1465 -9.1591 16 14 1.5217 5.6180 -8.6140 17 1 2.8177 5.6914 -9.3353 18 1 0.4568 6.2343 -9.4455 19 1 1.6299 6.3494 -7.3261 20 6 2.0324 -0.7104 1.2305 21 6 1.6984 -0.2382 2.4860 22 6 2.1588 -0.8902 3.6147 23 6 2.9523 -2.0150 3.4878 24 6 3.2903 -2.4844 2.2323 25 6 2.8267 -1.8346 1.1036 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9564 0.8900 32 1 3.1300 -0.7216 -1.2490 33 1 1.6766 -1.7489 -1.2492 34 1 0.4400 0.0001 -2.4984 35 1 1.8934 1.0277 -2.4984 36 1 2.7407 -1.3341 -3.6221 37 1 1.3302 1.9913 -4.7073 38 1 2.8354 1.4837 -5.5105 39 1 1.5929 1.1585 -7.6320 40 1 0.0880 1.6660 -6.8282 41 1 0.0989 3.5709 -9.9797 42 1 1.0778 0.6402 2.5851 43 1 1.8982 -0.5210 4.5956 44 1 3.3117 -2.5245 4.3697 45 1 3.9138 -3.3606 2.1332 46 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609541888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:47 Heat of formation + Delta-G solvation = -74.329074 kcal Electronic energy + Delta-G solvation = -25197.092772 eV Core-core repulsion = 21598.790669 eV Total energy + Delta-G solvation = -3598.302103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24644 -37.49321 -36.53752 -35.42870 -34.59097 -33.88986 -31.33097 -31.15857 -30.30650 -28.35168 -27.50363 -25.59794 -24.50994 -22.77170 -22.02486 -21.64229 -19.38427 -18.78723 -17.48876 -17.30764 -16.47239 -16.09099 -15.58110 -15.29714 -15.23689 -15.05089 -14.71219 -14.54499 -14.02006 -13.87802 -13.84483 -13.59553 -13.33049 -12.74914 -12.62337 -12.51692 -12.14822 -11.92985 -11.77655 -11.70677 -11.65812 -11.56087 -11.47292 -11.38663 -11.10570 -11.08413 -10.95862 -10.68891 -10.66195 -10.41218 -10.37948 -9.77540 -9.45226 -9.17386 -9.00136 -8.94256 -8.50481 -6.12530 -4.18064 0.81341 1.10698 1.14271 3.16186 3.25811 3.32060 3.34638 3.52619 4.20863 4.28512 4.38120 4.40035 4.66369 4.72172 4.74264 4.81155 4.81987 4.93030 5.06457 5.14868 5.21411 5.22663 5.27877 5.40690 5.43618 5.47056 5.62747 5.68507 5.68795 5.70447 5.77266 5.78677 5.81028 5.86652 6.02058 6.07989 6.13586 6.25658 6.26355 6.39928 6.49219 6.74739 7.11406 7.30493 7.36796 7.80414 8.17615 8.85335 9.46648 10.98503 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.002495 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.354889 B =11221.171844 C =12052.255877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.024 4.024 3 C -0.145 4.145 4 C -0.118 4.118 5 C 0.109 3.891 6 N -1.128 6.128 7 S 2.593 3.407 8 O -0.969 6.969 9 O -0.967 6.967 10 C -0.590 4.590 11 C 0.028 3.972 12 C -0.520 4.520 13 H 0.061 0.939 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.064 4.064 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.122 4.122 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.411 0.589 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -8.031 25.347 27.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.202 4.202 4 C -0.157 4.157 5 C -0.017 4.017 6 N -0.886 5.886 7 S 2.691 3.309 8 O -0.959 6.959 9 O -0.957 6.957 10 C -0.723 4.723 11 C -0.011 4.011 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.065 4.065 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.140 4.140 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.244 0.756 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.073 -8.542 24.656 26.410 hybrid contribution 0.904 1.238 0.104 1.536 sum 4.977 -7.304 24.760 26.290 Atomic orbital electron populations 1.22013 0.93208 1.02558 1.02569 1.19488 0.96112 0.95308 0.91541 1.22004 1.01433 0.94241 1.02565 1.21923 1.01299 0.99930 0.92505 1.21475 1.00099 0.95790 0.84312 1.55787 1.52837 1.56325 1.23611 1.05508 0.74395 0.78662 0.72347 1.93551 1.74833 1.64678 1.62845 1.93537 1.31596 1.86342 1.84240 1.30443 1.10907 1.20402 1.10558 1.18960 0.96726 0.98824 0.86625 1.20999 1.35226 0.95291 1.04418 0.92069 1.25071 0.94914 0.98528 0.96020 1.69953 1.36432 1.36798 1.09644 0.86470 0.78169 0.84296 0.78342 1.20481 1.21012 1.19777 1.19838 0.96996 0.95341 0.94276 1.20998 1.00269 1.00102 0.91934 1.21129 0.98199 0.96003 0.98465 1.21135 0.99058 0.97057 0.97429 1.21165 0.99955 0.99907 0.92656 1.21245 0.98052 0.95655 0.99046 0.92310 0.91263 0.92216 0.92265 0.91340 0.92313 0.90761 0.90637 0.89902 0.91457 0.75594 0.86371 0.86125 0.94851 0.94807 0.92533 0.86104 0.86279 0.86398 0.86229 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.93 37.16 0.29 -0.92 16 2 C -0.02 -0.19 0.63 -155.66 -0.10 -0.29 16 3 C -0.15 -1.13 7.93 37.16 0.29 -0.84 16 4 C -0.12 -1.01 3.07 -26.73 -0.08 -1.09 16 5 C 0.11 1.16 5.43 -4.05 -0.02 1.14 16 6 N -1.13 -13.98 5.88 -10.62 -0.06 -14.04 16 7 S 2.59 45.52 5.46 -107.50 -0.59 44.94 16 8 O -0.97 -19.98 18.08 -57.54 -1.04 -21.02 16 9 O -0.97 -19.83 17.50 -57.54 -1.01 -20.84 16 10 C -0.59 -11.06 6.01 37.16 0.22 -10.84 16 11 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 12 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 16 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 20 C -0.06 -0.55 4.76 -104.62 -0.50 -1.05 16 21 C -0.12 -0.93 8.71 -39.58 -0.34 -1.27 16 22 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 23 C -0.13 -0.97 10.05 -39.58 -0.40 -1.36 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.12 -1.02 8.98 -39.58 -0.36 -1.38 16 26 H 0.06 0.43 7.39 -51.92 -0.38 0.05 16 27 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 31 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 32 H 0.07 0.57 7.51 -51.93 -0.39 0.18 16 33 H 0.08 0.64 7.51 -51.93 -0.39 0.25 16 34 H 0.08 0.95 5.98 -51.93 -0.31 0.63 16 35 H 0.07 0.64 6.43 -51.92 -0.33 0.30 16 36 H 0.41 4.23 8.62 -34.47 -0.30 3.93 16 37 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 38 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 0.83 7.10 -52.48 -0.37 0.45 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.13 0.93 5.90 -52.49 -0.31 0.62 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -35.04 379.97 -10.77 -45.81 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.19 Total: 2.08 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: -2.33 Total: -33.06 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.67 Total: -39.75 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -2.05 Total: -41.85 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 45.52 SS G_CDS: -0.59 Total: 44.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.04 -10.77 -45.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609541888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.518 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds