Wall clock time and date at job start Tue Mar 31 2020 15:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.52997 * 109.47298 * 59.99877 * 4 2 1 6 6 N 1.46495 * 109.47449 * 179.97438 * 5 4 2 7 7 S 1.65599 * 120.00307 * 165.00021 * 6 5 4 8 8 O 1.42102 * 104.28083 * 181.07207 * 7 6 5 9 9 O 1.42105 * 104.27676 * 308.93318 * 7 6 5 10 10 C 1.81402 * 104.44922 * 65.00029 * 7 6 5 11 11 C 1.52999 * 109.47409 * 180.02562 * 10 7 6 12 12 C 1.50695 * 109.47464 * 180.02562 * 11 10 7 13 13 H 1.08003 * 119.99833 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00252 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99825 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00051 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47143 * 90.00045 * 16 14 12 18 18 H 1.48504 * 109.46991 * 209.99996 * 16 14 12 19 19 H 1.48499 * 109.46904 * 330.00072 * 16 14 12 20 20 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 21 21 C 1.38237 * 119.99761 * 300.00365 * 20 2 1 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 2 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00191 * 119.97467 * 20 2 1 26 26 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 27 27 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 28 28 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 31 31 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 32 32 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 34 34 H 1.08998 * 109.47349 * 300.00486 * 5 4 2 35 35 H 1.09007 * 109.46746 * 60.00319 * 5 4 2 36 36 H 0.97001 * 120.00079 * 345.00319 * 6 5 4 37 37 H 1.09002 * 109.47043 * 300.00632 * 10 7 6 38 38 H 1.09003 * 109.46538 * 60.00187 * 10 7 6 39 39 H 1.09000 * 109.46953 * 300.00377 * 11 10 7 40 40 H 1.08997 * 109.46860 * 59.99901 * 11 10 7 41 41 H 0.97000 * 120.00001 * 179.97438 * 15 14 12 42 42 H 1.08005 * 120.00088 * 359.96779 * 21 20 2 43 43 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 46 46 H 1.07999 * 119.99990 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4985 6 7 2.0187 -0.6902 -3.6946 7 16 1.3389 -0.3714 -5.1706 8 8 2.0347 -1.2249 -6.0687 9 8 -0.0575 -0.5194 -4.9525 10 6 1.7520 1.3652 -5.4936 11 6 1.1714 1.7846 -6.8456 12 6 1.5151 3.2270 -7.1142 13 1 2.0905 3.7884 -6.3930 14 6 1.0950 3.8302 -8.2807 15 7 0.3948 3.1465 -9.1591 16 14 1.5217 5.6180 -8.6140 17 1 2.8177 5.6914 -9.3353 18 1 0.4568 6.2343 -9.4455 19 1 1.6299 6.3494 -7.3261 20 6 2.0324 -0.7104 1.2305 21 6 1.6984 -0.2382 2.4860 22 6 2.1588 -0.8902 3.6147 23 6 2.9523 -2.0150 3.4878 24 6 3.2903 -2.4844 2.2323 25 6 2.8267 -1.8346 1.1036 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9564 0.8900 32 1 3.1300 -0.7216 -1.2490 33 1 1.6766 -1.7489 -1.2492 34 1 0.4400 0.0001 -2.4984 35 1 1.8934 1.0277 -2.4984 36 1 2.7407 -1.3341 -3.6221 37 1 1.3302 1.9913 -4.7073 38 1 2.8354 1.4837 -5.5105 39 1 1.5929 1.1585 -7.6320 40 1 0.0880 1.6660 -6.8282 41 1 0.0989 3.5709 -9.9797 42 1 1.0778 0.6402 2.5851 43 1 1.8982 -0.5210 4.5956 44 1 3.3117 -2.5245 4.3697 45 1 3.9138 -3.3606 2.1332 46 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609541888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:46 Heat of formation + Delta-G solvation = -97.239847 kcal Electronic energy + Delta-G solvation = -25198.086257 eV Core-core repulsion = 21598.790669 eV Total energy + Delta-G solvation = -3599.295588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84151 -38.29085 -37.98679 -36.98591 -35.87767 -35.51819 -33.10666 -31.89598 -30.93469 -29.10956 -28.12078 -27.57211 -25.24428 -23.58343 -23.36200 -22.64205 -20.42371 -19.79933 -19.03381 -18.15310 -18.05987 -17.19492 -17.03928 -16.51587 -16.18706 -15.96277 -15.86477 -15.64726 -15.10113 -14.68444 -14.54768 -14.49763 -14.43235 -14.16975 -13.71262 -13.51122 -13.34892 -13.18090 -13.08713 -12.92298 -12.85153 -12.78858 -12.75157 -12.38514 -12.29705 -12.22056 -12.15956 -12.09570 -11.79383 -11.69298 -11.34494 -11.29944 -11.12366 -10.63704 -10.25929 -9.74060 -9.52095 -8.24930 -6.38729 -0.64255 0.53556 0.57479 1.41636 1.43366 1.54425 1.89421 2.38839 2.83898 2.95593 3.08578 3.29647 3.60305 3.76435 3.99841 4.02948 4.14878 4.17743 4.22333 4.24803 4.36848 4.40205 4.42370 4.57264 4.63935 4.72766 4.78875 4.79731 4.86489 5.02909 5.05724 5.08926 5.11935 5.24164 5.24248 5.29256 5.29628 5.31416 5.40549 5.49804 5.68986 5.69787 5.70539 5.80988 6.07618 6.18461 6.20290 6.75200 7.31363 8.87313 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.002495 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.354889 B =11221.171844 C =12052.255877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.018 4.018 3 C -0.146 4.146 4 C -0.113 4.113 5 C 0.098 3.902 6 N -1.108 6.108 7 S 2.621 3.379 8 O -1.001 7.001 9 O -0.998 6.998 10 C -0.588 4.588 11 C 0.019 3.981 12 C -0.537 4.537 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.935 5.935 16 Si 0.974 3.026 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.257 1.257 20 C -0.074 4.074 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.129 4.129 25 C -0.136 4.136 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.425 0.575 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.005 0.995 40 H 0.007 0.993 41 H 0.267 0.733 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 -7.045 27.526 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 C -0.203 4.203 4 C -0.152 4.152 5 C -0.027 4.027 6 N -0.870 5.870 7 S 2.717 3.283 8 O -0.992 6.992 9 O -0.988 6.988 10 C -0.720 4.720 11 C -0.020 4.020 12 C -0.576 4.576 13 H 0.095 0.905 14 C -0.204 4.204 15 N -0.574 5.574 16 Si 0.797 3.203 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.180 1.180 20 C -0.074 4.074 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.155 4.155 24 C -0.147 4.147 25 C -0.154 4.154 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.261 0.739 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.076 0.924 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.424 -7.559 26.844 28.411 hybrid contribution 0.487 0.861 -0.468 1.094 sum 5.910 -6.698 26.376 27.848 Atomic orbital electron populations 1.22031 0.93573 1.02175 1.02759 1.19421 0.95764 0.95514 0.91217 1.22019 1.01480 0.93942 1.02898 1.21900 1.02079 0.99684 0.91505 1.21772 0.99938 0.96909 0.84081 1.55256 1.52991 1.56520 1.22189 1.04392 0.73481 0.77552 0.72834 1.93500 1.75287 1.65405 1.64977 1.93497 1.33821 1.86478 1.85015 1.30337 1.12123 1.22092 1.07476 1.18824 0.95350 0.98133 0.89656 1.21522 1.34915 0.96382 1.04784 0.90529 1.26127 0.94733 1.03621 0.95903 1.70103 1.37944 1.39054 1.10327 0.85314 0.77911 0.78287 0.78751 1.19700 1.20941 1.18041 1.19909 0.97395 0.95634 0.94489 1.21187 1.00541 1.00583 0.92020 1.21412 0.97994 0.96018 0.99193 1.21428 0.98878 0.97147 0.98050 1.21426 1.00130 1.00417 0.92735 1.21431 0.98400 0.95897 0.99673 0.91488 0.91726 0.92898 0.92181 0.91323 0.91722 0.89427 0.90647 0.90690 0.89662 0.73899 0.83877 0.83867 0.97644 0.97461 0.92445 0.85241 0.84632 0.84712 0.84856 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 7.93 71.98 0.57 -1.72 16 2 C -0.02 -0.27 0.63 -52.93 -0.03 -0.30 16 3 C -0.15 -1.97 7.93 71.98 0.57 -1.40 16 4 C -0.11 -1.70 3.07 30.59 0.09 -1.61 16 5 C 0.10 1.90 5.43 86.38 0.47 2.36 16 6 N -1.11 -25.48 5.88 -187.50 -1.10 -26.58 16 7 S 2.62 91.05 5.46 -56.49 -0.31 90.74 16 8 O -1.00 -41.44 18.08 -127.65 -2.31 -43.75 16 9 O -1.00 -41.19 17.50 -127.65 -2.23 -43.42 16 10 C -0.59 -21.54 6.01 71.98 0.43 -21.10 16 11 C 0.02 1.00 4.98 29.85 0.15 1.15 16 12 C -0.54 -29.48 9.11 25.60 0.23 -29.25 16 13 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 14 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 15 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 16 Si 0.97 43.04 29.54 68.60 2.03 45.06 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 20 C -0.07 -1.14 4.76 -19.86 -0.09 -1.24 16 21 C -0.13 -1.82 8.71 22.27 0.19 -1.63 16 22 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 23 C -0.14 -1.82 10.05 22.27 0.22 -1.59 16 24 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 25 C -0.14 -2.07 8.98 22.27 0.20 -1.87 16 26 H 0.07 0.90 7.39 -2.38 -0.02 0.88 16 27 H 0.06 1.05 6.43 -2.39 -0.02 1.03 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.91 6.43 -2.39 -0.02 0.89 16 31 H 0.06 0.79 7.39 -2.38 -0.02 0.77 16 32 H 0.09 1.10 7.51 -2.38 -0.02 1.09 16 33 H 0.07 1.15 7.51 -2.39 -0.02 1.13 16 34 H 0.07 1.61 5.98 -2.39 -0.01 1.60 16 35 H 0.09 1.37 6.43 -2.38 -0.02 1.36 16 36 H 0.42 7.81 8.62 -96.75 -0.83 6.98 16 37 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 38 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 39 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.13 1.55 7.10 -2.91 -0.02 1.53 16 43 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 44 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.13 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.13 1.73 5.90 -2.91 -0.02 1.72 16 Total: -1.00 -76.21 379.97 0.41 -75.80 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.14 Total: 19.86 kcal Atomic # 6 Polarization: -65.06 SS G_CDS: 3.92 Total: -61.14 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -0.82 Total: -83.15 kcal Atomic # 8 Polarization: -82.63 SS G_CDS: -4.54 Total: -87.18 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 91.05 SS G_CDS: -0.31 Total: 90.74 kcal Total: -76.21 0.41 -75.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609541888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.440 kcal (2) G-P(sol) polarization free energy of solvation -76.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds