Wall clock time and date at job start Tue Mar 31 2020 14:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47084 * 2 1 4 4 C 1.38234 * 120.00020 * 272.71090 * 3 2 1 5 5 C 1.38233 * 119.99957 * 179.72181 * 4 3 2 6 6 C 1.38228 * 120.00286 * 0.28750 * 5 4 3 7 7 C 1.38235 * 119.99761 * 359.95050 * 6 5 4 8 8 C 1.50698 * 120.00245 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47071 * 258.83716 * 8 7 6 10 10 C 1.38233 * 120.00039 * 92.92885 * 3 2 1 11 11 S 1.76199 * 119.99831 * 0.04010 * 10 3 2 12 12 O 1.42107 * 106.40141 * 189.19363 * 11 10 3 13 13 O 1.42093 * 106.40378 * 322.11721 * 11 10 3 14 14 N 1.65600 * 107.21850 * 75.66087 * 11 10 3 15 15 C 1.46501 * 119.99677 * 275.41666 * 14 11 10 16 16 C 1.46494 * 120.00296 * 95.41890 * 14 11 10 17 17 H 1.08998 * 109.47506 * 358.43373 * 16 14 11 18 18 C 1.53002 * 109.47046 * 238.43481 * 16 14 11 19 19 C 1.50700 * 109.47292 * 118.43402 * 16 14 11 20 20 H 1.08004 * 119.99988 * 5.70244 * 19 16 14 21 21 C 1.37879 * 120.00134 * 185.69982 * 19 16 14 22 22 N 1.31517 * 119.99830 * 191.19933 * 21 19 16 23 23 Si 1.86793 * 120.00226 * 11.20190 * 21 19 16 24 24 H 1.48498 * 109.47064 * 95.28533 * 23 21 19 25 25 H 1.48498 * 109.47665 * 215.28820 * 23 21 19 26 26 H 1.48503 * 109.47050 * 335.29157 * 23 21 19 27 27 H 1.09001 * 109.47369 * 187.41240 * 1 2 3 28 28 H 1.08997 * 109.47146 * 307.41583 * 1 2 3 29 29 H 1.08997 * 109.47007 * 67.41142 * 1 2 3 30 30 H 1.09002 * 109.47129 * 240.00181 * 2 1 3 31 31 H 1.09003 * 109.46976 * 120.00195 * 2 1 3 32 32 H 1.08004 * 120.00387 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.99917 * 180.25554 * 5 4 3 34 34 H 1.07994 * 120.00369 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.47205 * 18.83636 * 8 7 6 36 36 H 1.09001 * 109.47635 * 138.83672 * 8 7 6 37 37 H 1.09000 * 109.47039 * 316.34898 * 9 8 7 38 38 H 1.09002 * 109.47114 * 76.35133 * 9 8 7 39 39 H 1.09003 * 109.46660 * 196.34794 * 9 8 7 40 40 H 1.08997 * 109.47233 * 90.00348 * 15 14 11 41 41 H 1.08998 * 109.47001 * 210.00236 * 15 14 11 42 42 H 1.09004 * 109.47351 * 330.00191 * 15 14 11 43 43 H 1.08995 * 109.47167 * 68.35698 * 18 16 14 44 44 H 1.09008 * 109.46927 * 188.35635 * 18 16 14 45 45 H 1.09004 * 109.46971 * 308.35232 * 18 16 14 46 46 H 0.97003 * 119.99739 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2093 2.0913 -1.1958 5 6 2.6646 3.3965 -1.1955 6 6 2.9486 4.0293 0.0002 7 6 2.7763 3.3571 1.1958 8 6 3.0853 4.0470 2.4994 9 6 4.4511 3.5838 3.0104 10 6 2.3204 2.0521 1.1956 11 16 2.1012 1.1951 2.7194 12 8 2.2666 2.1598 3.7497 13 8 0.9269 0.4087 2.5723 14 7 3.3611 0.1308 2.8689 15 6 3.2853 -1.1877 2.2349 16 6 4.5515 0.5077 3.6351 17 1 4.4379 1.5267 4.0051 18 6 5.7850 0.4271 2.7335 19 6 4.7181 -0.4338 4.7999 20 1 4.0639 -1.2871 4.9025 21 6 5.7058 -0.2061 5.7346 22 7 5.9982 -1.1325 6.6213 23 14 6.6285 1.4180 5.7418 24 1 5.9950 2.3429 6.7157 25 1 8.0423 1.1825 6.1303 26 1 6.5816 2.0199 4.3850 27 1 -0.3634 -1.0191 0.1326 28 1 -0.3633 0.6244 0.8162 29 1 -0.3633 0.3947 -0.9488 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.9873 1.5971 -2.1301 33 1 2.7990 3.9218 -2.1296 34 1 3.3047 5.0488 0.0004 35 1 3.1020 5.1259 2.3446 36 1 2.3190 3.7972 3.2333 37 1 4.5363 2.5037 2.8914 38 1 5.2385 4.0756 2.4392 39 1 4.5513 3.8423 4.0645 40 1 3.6929 -1.1296 1.2257 41 1 3.8616 -1.9053 2.8188 42 1 2.2448 -1.5093 2.1885 43 1 5.7336 1.2097 1.9767 44 1 6.6841 0.5617 3.3350 45 1 5.8161 -0.5478 2.2468 46 1 6.6933 -0.9724 7.2786 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609897811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:01 Heat of formation + Delta-G solvation = -20.902870 kcal Electronic energy + Delta-G solvation = -28448.655043 eV Core-core repulsion = 24852.669674 eV Total energy + Delta-G solvation = -3595.985369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.69958 -37.46264 -36.62992 -35.43035 -34.49247 -33.17405 -32.51011 -30.25112 -29.84655 -28.86711 -25.90155 -25.14269 -24.05946 -23.95032 -22.12697 -20.77729 -20.29736 -18.45880 -17.47415 -17.23922 -16.44010 -16.03376 -15.72697 -15.40817 -14.60185 -14.47684 -14.12162 -13.73636 -13.64182 -13.55942 -13.22027 -13.13422 -12.83398 -12.71296 -12.38792 -12.25013 -12.13991 -12.02649 -11.97348 -11.76074 -11.38509 -11.35024 -11.21432 -11.13260 -11.00023 -10.80403 -10.59245 -10.55012 -10.26566 -10.14115 -9.72879 -9.59501 -9.38668 -9.19474 -8.60152 -8.52857 -8.11573 -6.15792 -4.13383 0.76817 1.02481 1.32215 3.24436 3.32123 3.36705 3.38013 3.67209 4.22772 4.35898 4.53902 4.66789 4.78436 4.88528 5.12037 5.15516 5.27165 5.36848 5.39079 5.45324 5.52503 5.60806 5.69117 5.75814 5.87635 5.93374 5.97359 6.03424 6.07858 6.12894 6.14671 6.28888 6.33469 6.34824 6.39572 6.40758 6.52991 6.56188 6.62917 6.65114 6.75521 6.90452 6.92949 7.27361 7.37855 7.64838 8.44497 8.89867 9.46205 10.96778 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.006140 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.531567 B = 4559.272033 C = 5360.742188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.028 3.972 4 C -0.154 4.154 5 C -0.064 4.064 6 C -0.153 4.153 7 C 0.032 3.968 8 C -0.135 4.135 9 C -0.158 4.158 10 C -0.678 4.678 11 S 2.677 3.323 12 O -0.948 6.948 13 O -0.964 6.964 14 N -0.973 5.973 15 C 0.085 3.915 16 C 0.228 3.772 17 H 0.074 0.926 18 C -0.160 4.160 19 C -0.526 4.526 20 H 0.082 0.918 21 C 0.079 3.921 22 N -0.890 5.890 23 Si 0.852 3.148 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.247 1.247 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.027 0.973 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 7.062 -15.735 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.027 3.973 4 C -0.172 4.172 5 C -0.083 4.083 6 C -0.172 4.172 7 C 0.030 3.970 8 C -0.173 4.173 9 C -0.215 4.215 10 C -0.763 4.763 11 S 2.769 3.231 12 O -0.938 6.938 13 O -0.954 6.954 14 N -0.812 5.812 15 C -0.060 4.060 16 C 0.125 3.875 17 H 0.091 0.909 18 C -0.219 4.219 19 C -0.565 4.565 20 H 0.100 0.900 21 C -0.124 4.124 22 N -0.527 5.527 23 Si 0.678 3.322 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.171 1.171 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.348 7.111 -15.002 17.774 hybrid contribution 1.133 1.080 -0.779 1.748 sum -5.215 8.192 -15.780 18.529 Atomic orbital electron populations 1.21677 0.93148 1.02960 1.01629 1.21342 0.98292 0.91967 1.04641 1.19568 0.90691 0.95312 0.91751 1.21048 1.03320 0.95339 0.97530 1.21334 0.94463 0.94495 0.97958 1.21142 1.03531 1.00508 0.92029 1.19767 0.89495 0.91373 0.96345 1.21599 1.02115 0.99193 0.94346 1.22210 0.94497 1.03205 1.01589 1.30954 1.17204 1.07478 1.20656 1.02376 0.73580 0.73230 0.73930 1.93455 1.86035 1.59274 1.55056 1.93530 1.45764 1.69147 1.86944 1.57117 1.35042 1.24722 1.64333 1.21599 1.02091 0.85553 0.96796 1.19381 0.80028 0.98318 0.89820 0.90919 1.22561 1.00062 1.00037 0.99222 1.21121 1.17413 1.11510 1.06436 0.89986 1.24843 0.96109 0.96228 0.95255 1.69919 1.31343 1.32622 1.18802 0.87398 0.79419 0.85501 0.79837 1.20051 1.21126 1.17065 0.91954 0.90683 0.93639 0.90303 0.88894 0.85642 0.85754 0.85592 0.91318 0.84659 0.90655 0.93522 0.91316 0.93894 0.88832 0.90952 0.95394 0.92150 0.92755 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.22 37.16 0.34 -1.41 16 2 C -0.13 -1.66 5.16 -27.88 -0.14 -1.81 16 3 C 0.03 0.40 5.12 -104.63 -0.54 -0.13 16 4 C -0.15 -1.86 9.71 -39.58 -0.38 -2.25 16 5 C -0.06 -0.73 10.05 -39.59 -0.40 -1.13 16 6 C -0.15 -1.96 9.67 -39.59 -0.38 -2.34 16 7 C 0.03 0.49 5.10 -104.62 -0.53 -0.05 16 8 C -0.14 -2.11 5.33 -27.88 -0.15 -2.26 16 9 C -0.16 -2.71 8.20 37.16 0.30 -2.41 16 10 C -0.68 -11.10 5.82 -39.58 -0.23 -11.33 16 11 S 2.68 50.81 4.68 -107.50 -0.50 50.30 16 12 O -0.95 -19.78 11.06 -57.17 -0.63 -20.41 16 13 O -0.96 -18.60 12.41 -57.17 -0.71 -19.31 16 14 N -0.97 -19.19 3.06 -115.86 -0.35 -19.55 16 15 C 0.09 1.43 7.74 59.85 0.46 1.90 16 16 C 0.23 5.11 1.25 -69.08 -0.09 5.03 16 17 H 0.07 1.67 2.85 -51.93 -0.15 1.53 16 18 C -0.16 -3.23 8.06 37.16 0.30 -2.94 16 19 C -0.53 -14.02 8.55 -34.44 -0.29 -14.31 16 20 H 0.08 2.36 7.49 -52.48 -0.39 1.97 16 21 C 0.08 2.18 5.37 -17.82 -0.10 2.09 16 22 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 23 Si 0.85 20.27 25.70 -169.99 -4.37 15.90 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.25 -5.31 5.35 56.52 0.30 -5.01 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.11 6.52 -51.93 -0.34 0.78 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.09 1.34 1.76 -51.93 -0.09 1.24 16 32 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 33 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.13 1.30 8.03 -52.49 -0.42 0.88 16 35 H 0.07 0.88 7.99 -51.93 -0.41 0.46 16 36 H 0.14 2.33 5.07 -53.52 -0.27 2.06 16 37 H 0.07 1.41 1.96 -51.93 -0.10 1.31 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 41 H 0.09 1.69 7.03 -51.93 -0.37 1.32 16 42 H 0.07 1.12 6.01 -51.93 -0.31 0.81 16 43 H 0.03 0.50 7.25 -51.93 -0.38 0.12 16 44 H 0.06 1.27 4.84 -51.92 -0.25 1.02 16 45 H 0.05 1.03 7.36 -51.93 -0.38 0.65 16 46 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -30.77 341.66 -8.93 -39.70 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.46 Total: 6.98 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: -1.82 Total: -33.35 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.42 Total: -44.95 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.34 Total: -39.73 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.37 Total: 15.90 kcal Atomic # 16 Polarization: 50.81 SS G_CDS: -0.50 Total: 50.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.77 -8.93 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609897811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.793 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds