Wall clock time and date at job start Tue Mar 31 2020 14:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47084 * 2 1 4 4 C 1.38234 * 120.00020 * 272.71090 * 3 2 1 5 5 C 1.38233 * 119.99957 * 179.72181 * 4 3 2 6 6 C 1.38228 * 120.00286 * 0.28750 * 5 4 3 7 7 C 1.38235 * 119.99761 * 359.95050 * 6 5 4 8 8 C 1.50698 * 120.00245 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47071 * 258.83716 * 8 7 6 10 10 C 1.38233 * 120.00039 * 92.92885 * 3 2 1 11 11 S 1.76199 * 119.99831 * 0.04010 * 10 3 2 12 12 O 1.42107 * 106.40141 * 189.19363 * 11 10 3 13 13 O 1.42093 * 106.40378 * 322.11721 * 11 10 3 14 14 N 1.65600 * 107.21850 * 75.66087 * 11 10 3 15 15 C 1.46501 * 119.99677 * 275.41666 * 14 11 10 16 16 C 1.46494 * 120.00296 * 95.41890 * 14 11 10 17 17 H 1.08998 * 109.47506 * 358.43373 * 16 14 11 18 18 C 1.53002 * 109.47046 * 238.43481 * 16 14 11 19 19 C 1.50700 * 109.47292 * 118.43402 * 16 14 11 20 20 H 1.08004 * 119.99988 * 5.70244 * 19 16 14 21 21 C 1.37879 * 120.00134 * 185.69982 * 19 16 14 22 22 N 1.31517 * 119.99830 * 191.19933 * 21 19 16 23 23 Si 1.86793 * 120.00226 * 11.20190 * 21 19 16 24 24 H 1.48498 * 109.47064 * 95.28533 * 23 21 19 25 25 H 1.48498 * 109.47665 * 215.28820 * 23 21 19 26 26 H 1.48503 * 109.47050 * 335.29157 * 23 21 19 27 27 H 1.09001 * 109.47369 * 187.41240 * 1 2 3 28 28 H 1.08997 * 109.47146 * 307.41583 * 1 2 3 29 29 H 1.08997 * 109.47007 * 67.41142 * 1 2 3 30 30 H 1.09002 * 109.47129 * 240.00181 * 2 1 3 31 31 H 1.09003 * 109.46976 * 120.00195 * 2 1 3 32 32 H 1.08004 * 120.00387 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.99917 * 180.25554 * 5 4 3 34 34 H 1.07994 * 120.00369 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.47205 * 18.83636 * 8 7 6 36 36 H 1.09001 * 109.47635 * 138.83672 * 8 7 6 37 37 H 1.09000 * 109.47039 * 316.34898 * 9 8 7 38 38 H 1.09002 * 109.47114 * 76.35133 * 9 8 7 39 39 H 1.09003 * 109.46660 * 196.34794 * 9 8 7 40 40 H 1.08997 * 109.47233 * 90.00348 * 15 14 11 41 41 H 1.08998 * 109.47001 * 210.00236 * 15 14 11 42 42 H 1.09004 * 109.47351 * 330.00191 * 15 14 11 43 43 H 1.08995 * 109.47167 * 68.35698 * 18 16 14 44 44 H 1.09008 * 109.46927 * 188.35635 * 18 16 14 45 45 H 1.09004 * 109.46971 * 308.35232 * 18 16 14 46 46 H 0.97003 * 119.99739 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2093 2.0913 -1.1958 5 6 2.6646 3.3965 -1.1955 6 6 2.9486 4.0293 0.0002 7 6 2.7763 3.3571 1.1958 8 6 3.0853 4.0470 2.4994 9 6 4.4511 3.5838 3.0104 10 6 2.3204 2.0521 1.1956 11 16 2.1012 1.1951 2.7194 12 8 2.2666 2.1598 3.7497 13 8 0.9269 0.4087 2.5723 14 7 3.3611 0.1308 2.8689 15 6 3.2853 -1.1877 2.2349 16 6 4.5515 0.5077 3.6351 17 1 4.4379 1.5267 4.0051 18 6 5.7850 0.4271 2.7335 19 6 4.7181 -0.4338 4.7999 20 1 4.0639 -1.2871 4.9025 21 6 5.7058 -0.2061 5.7346 22 7 5.9982 -1.1325 6.6213 23 14 6.6285 1.4180 5.7418 24 1 5.9950 2.3429 6.7157 25 1 8.0423 1.1825 6.1303 26 1 6.5816 2.0199 4.3850 27 1 -0.3634 -1.0191 0.1326 28 1 -0.3633 0.6244 0.8162 29 1 -0.3633 0.3947 -0.9488 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.9873 1.5971 -2.1301 33 1 2.7990 3.9218 -2.1296 34 1 3.3047 5.0488 0.0004 35 1 3.1020 5.1259 2.3446 36 1 2.3190 3.7972 3.2333 37 1 4.5363 2.5037 2.8914 38 1 5.2385 4.0756 2.4392 39 1 4.5513 3.8423 4.0645 40 1 3.6929 -1.1296 1.2257 41 1 3.8616 -1.9053 2.8188 42 1 2.2448 -1.5093 2.1885 43 1 5.7336 1.2097 1.9767 44 1 6.6841 0.5617 3.3350 45 1 5.8161 -0.5478 2.2468 46 1 6.6933 -0.9724 7.2786 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609897811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:00 Heat of formation + Delta-G solvation = -40.408164 kcal Electronic energy + Delta-G solvation = -28449.500856 eV Core-core repulsion = 24852.669674 eV Total energy + Delta-G solvation = -3596.831182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70423 -38.88495 -38.23281 -36.90809 -35.62831 -34.55927 -34.14413 -31.88778 -30.95379 -29.93518 -27.37106 -27.06953 -25.14199 -25.00753 -23.24109 -22.45658 -21.36935 -19.86191 -19.10679 -18.68151 -18.01057 -17.36560 -16.96407 -16.69407 -16.17243 -15.62132 -15.44205 -15.17104 -14.90936 -14.78447 -14.56836 -14.43314 -14.25725 -14.04452 -13.89543 -13.68082 -13.53378 -13.19513 -13.14426 -13.01159 -12.85550 -12.77101 -12.74223 -12.48507 -12.45055 -12.28073 -12.04211 -11.81632 -11.66946 -11.44156 -11.36218 -11.24521 -10.92344 -10.59098 -10.23823 -9.69955 -9.58193 -8.29574 -6.30319 -0.54496 -0.10493 0.35169 1.33171 1.40740 1.46093 2.05650 2.34944 2.56122 2.87133 3.06343 3.34553 3.64485 3.71358 3.93112 4.03169 4.21733 4.31588 4.32951 4.42886 4.47210 4.50226 4.51480 4.59918 4.65699 4.66698 4.73610 4.80813 4.87982 4.90543 4.92389 5.04921 5.06699 5.10115 5.19961 5.22378 5.31226 5.36372 5.41490 5.44183 5.52406 5.54714 5.60392 5.65713 5.90293 5.96978 6.36207 6.72441 7.32565 8.86749 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.006140 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.531567 B = 4559.272033 C = 5360.742188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.016 3.984 4 C -0.150 4.150 5 C -0.053 4.053 6 C -0.153 4.153 7 C 0.012 3.988 8 C -0.136 4.136 9 C -0.165 4.165 10 C -0.687 4.687 11 S 2.673 3.327 12 O -0.978 6.978 13 O -0.980 6.980 14 N -0.984 5.984 15 C 0.083 3.917 16 C 0.232 3.768 17 H 0.071 0.929 18 C -0.155 4.155 19 C -0.527 4.527 20 H 0.042 0.958 21 C 0.023 3.977 22 N -0.940 5.940 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.281 1.281 26 H -0.210 1.210 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 9.531 -20.266 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C 0.014 3.986 4 C -0.168 4.168 5 C -0.070 4.070 6 C -0.171 4.171 7 C 0.010 3.990 8 C -0.173 4.173 9 C -0.222 4.222 10 C -0.777 4.777 11 S 2.771 3.229 12 O -0.968 6.968 13 O -0.970 6.970 14 N -0.823 5.823 15 C -0.062 4.062 16 C 0.127 3.873 17 H 0.088 0.912 18 C -0.214 4.214 19 C -0.566 4.566 20 H 0.060 0.940 21 C -0.176 4.176 22 N -0.580 5.580 23 Si 0.727 3.273 24 H -0.208 1.208 25 H -0.206 1.206 26 H -0.132 1.132 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.171 0.829 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.868 9.542 -19.508 22.495 hybrid contribution 0.827 0.291 0.521 1.020 sum -5.042 9.832 -18.986 21.968 Atomic orbital electron populations 1.21676 0.93226 1.02848 1.01759 1.21422 0.98321 0.91849 1.05272 1.19792 0.90969 0.95858 0.91953 1.21465 1.01949 0.95743 0.97688 1.21852 0.91968 0.94137 0.99078 1.21488 1.02679 1.01647 0.91330 1.19839 0.90735 0.91206 0.97175 1.21514 1.00501 1.01024 0.94304 1.22236 0.96350 1.02262 1.01344 1.30337 1.20250 1.08012 1.19119 1.02084 0.73066 0.72926 0.74809 1.93445 1.86234 1.59712 1.57446 1.93509 1.46216 1.69783 1.87526 1.57066 1.34175 1.26179 1.64834 1.21721 1.02558 0.84103 0.97778 1.19170 0.82164 0.96790 0.89160 0.91155 1.22435 0.98112 1.01566 0.99266 1.21441 1.16043 1.10994 1.08130 0.93970 1.25651 0.97430 0.99519 0.94981 1.70061 1.32757 1.34918 1.20214 0.86567 0.77989 0.81224 0.81568 1.20769 1.20629 1.13182 0.91495 0.93514 0.91240 0.87197 0.90667 0.82376 0.81625 0.82881 0.88439 0.87100 0.92461 0.91095 0.92676 0.90636 0.91078 0.90186 0.92638 0.92965 0.92013 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.22 71.98 0.66 -2.62 16 2 C -0.13 -3.15 5.16 29.85 0.15 -3.00 16 3 C 0.02 0.40 5.12 -19.87 -0.10 0.30 16 4 C -0.15 -2.83 9.71 22.27 0.22 -2.61 16 5 C -0.05 -0.87 10.05 22.27 0.22 -0.65 16 6 C -0.15 -3.15 9.67 22.27 0.22 -2.94 16 7 C 0.01 0.34 5.10 -19.87 -0.10 0.24 16 8 C -0.14 -4.03 5.33 29.85 0.16 -3.87 16 9 C -0.17 -5.37 8.20 71.98 0.59 -4.78 16 10 C -0.69 -21.29 5.82 22.27 0.13 -21.16 16 11 S 2.67 103.17 4.68 -56.49 -0.26 102.91 16 12 O -0.98 -42.32 11.06 -128.00 -1.42 -43.74 16 13 O -0.98 -39.09 12.41 -128.00 -1.59 -40.68 16 14 N -0.98 -39.41 3.06 -520.46 -1.59 -41.00 16 15 C 0.08 2.84 7.74 127.77 0.99 3.83 16 16 C 0.23 10.49 1.25 44.25 0.06 10.54 16 17 H 0.07 3.26 2.85 -2.39 -0.01 3.25 16 18 C -0.15 -6.05 8.06 71.98 0.58 -5.47 16 19 C -0.53 -29.36 8.55 25.60 0.22 -29.14 16 20 H 0.04 2.61 7.49 -2.91 -0.02 2.59 16 21 C 0.02 1.30 5.37 84.65 0.45 1.76 16 22 N -0.94 -57.89 13.96 21.45 0.30 -57.60 16 23 Si 0.90 42.25 25.70 68.60 1.76 44.01 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.21 -8.48 5.35 99.48 0.53 -7.95 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.37 6.52 -2.39 -0.02 1.35 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.11 1.89 8.10 -2.39 -0.02 1.87 16 31 H 0.08 2.07 1.76 -2.39 0.00 2.07 16 32 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.15 2.28 8.03 -2.91 -0.02 2.25 16 35 H 0.10 2.22 7.99 -2.38 -0.02 2.20 16 36 H 0.11 3.86 5.07 -27.61 -0.14 3.72 16 37 H 0.06 2.06 1.96 -2.39 0.00 2.06 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 2.04 7.65 -2.39 -0.02 2.02 16 41 H 0.07 2.70 7.03 -2.39 -0.02 2.68 16 42 H 0.08 2.56 6.01 -2.38 -0.01 2.55 16 43 H 0.05 1.86 7.25 -2.39 -0.02 1.84 16 44 H 0.05 2.10 4.84 -2.38 -0.01 2.09 16 45 H 0.06 2.28 7.36 -2.38 -0.02 2.26 16 46 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -71.57 341.66 2.35 -69.22 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.70 Total: 26.44 kcal Atomic # 6 Polarization: -64.01 SS G_CDS: 4.45 Total: -59.56 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -1.29 Total: -98.59 kcal Atomic # 8 Polarization: -81.41 SS G_CDS: -3.00 Total: -84.42 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.76 Total: 44.01 kcal Atomic # 16 Polarization: 103.17 SS G_CDS: -0.26 Total: 102.91 kcal Total: -71.57 2.35 -69.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609897811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.812 kcal (2) G-P(sol) polarization free energy of solvation -71.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds