Wall clock time and date at job start Tue Mar 31 2020 14:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46709 * 2 1 4 4 C 1.38238 * 120.00210 * 255.52879 * 3 2 1 5 5 C 1.38225 * 120.00306 * 180.25282 * 4 3 2 6 6 C 1.38242 * 119.99700 * 359.76547 * 5 4 3 7 7 C 1.38227 * 120.00324 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00337 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46954 * 270.42570 * 8 7 6 10 10 C 1.38238 * 119.99934 * 75.31523 * 3 2 1 11 11 S 1.76196 * 120.00112 * 359.97438 * 10 3 2 12 12 O 1.42095 * 106.40310 * 151.38464 * 11 10 3 13 13 O 1.42105 * 106.40055 * 18.47106 * 11 10 3 14 14 N 1.65597 * 107.21973 * 264.92965 * 11 10 3 15 15 C 1.46503 * 119.99734 * 294.52546 * 14 11 10 16 16 C 1.46499 * 120.00010 * 114.52767 * 14 11 10 17 17 H 1.09000 * 109.47156 * 353.25060 * 16 14 11 18 18 C 1.53002 * 109.47332 * 113.25467 * 16 14 11 19 19 C 1.50700 * 109.46999 * 233.25396 * 16 14 11 20 20 H 1.08000 * 120.00180 * 359.97438 * 19 16 14 21 21 C 1.37875 * 119.99940 * 180.02562 * 19 16 14 22 22 N 1.31515 * 120.00162 * 359.97438 * 21 19 16 23 23 Si 1.86808 * 119.99967 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.46957 * 269.99669 * 23 21 19 25 25 H 1.48498 * 109.47182 * 29.99563 * 23 21 19 26 26 H 1.48498 * 109.47082 * 149.99863 * 23 21 19 27 27 H 1.09002 * 109.47247 * 73.54448 * 1 2 3 28 28 H 1.09008 * 109.47040 * 193.53481 * 1 2 3 29 29 H 1.08997 * 109.47778 * 313.53637 * 1 2 3 30 30 H 1.09003 * 109.46934 * 240.00129 * 2 1 3 31 31 H 1.08999 * 109.47062 * 119.99872 * 2 1 3 32 32 H 1.08003 * 119.99589 * 0.04067 * 4 3 2 33 33 H 1.07995 * 120.00418 * 179.78919 * 5 4 3 34 34 H 1.08005 * 119.99748 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47004 * 30.42454 * 8 7 6 36 36 H 1.08999 * 109.47156 * 150.42760 * 8 7 6 37 37 H 1.08997 * 109.47423 * 59.99768 * 9 8 7 38 38 H 1.08998 * 109.47096 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.47170 * 299.99782 * 9 8 7 40 40 H 1.08995 * 109.47325 * 275.71339 * 15 14 11 41 41 H 1.08991 * 109.47106 * 35.71883 * 15 14 11 42 42 H 1.09001 * 109.46570 * 155.71480 * 15 14 11 43 43 H 1.09001 * 109.46622 * 59.99922 * 18 16 14 44 44 H 1.08995 * 109.46997 * 180.02562 * 18 16 14 45 45 H 1.09003 * 109.46588 * 300.00040 * 18 16 14 46 46 H 0.97004 * 119.99702 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.5447 1.9729 -1.1592 5 6 3.0102 3.2744 -1.1579 6 6 2.9588 4.0256 0.0015 7 6 2.4424 3.4751 1.1595 8 6 2.3870 4.2939 2.4235 9 6 3.6871 4.1088 3.2085 10 6 1.9765 2.1737 1.1581 11 16 1.3175 1.4722 2.6340 12 8 1.9654 2.1293 3.7145 13 8 1.3424 0.0628 2.4542 14 7 -0.2788 1.9055 2.7125 15 6 -0.6483 3.3138 2.8751 16 6 -1.3214 0.8806 2.6193 17 1 -0.8657 -0.0809 2.3829 18 6 -2.0591 0.7805 3.9560 19 6 -2.2976 1.2544 1.5337 20 1 -2.1557 2.1645 0.9698 21 6 -3.3723 0.4349 1.2610 22 7 -3.5454 -0.6731 1.9480 23 14 -4.5819 0.8978 -0.0852 24 1 -5.6741 1.7215 0.4926 25 1 -3.8786 1.6756 -1.1366 26 1 -5.1547 -0.3357 -0.6816 27 1 -0.3634 0.2911 -0.9856 28 1 -0.3633 -0.9992 0.2405 29 1 -0.3634 0.7078 0.7449 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.5845 1.3860 -2.0650 33 1 3.4136 3.7045 -2.0626 34 1 3.3229 5.0425 0.0026 35 1 2.2627 5.3465 2.1693 36 1 1.5449 3.9653 3.0326 37 1 4.5292 4.4373 2.5994 38 1 3.6472 4.7013 4.1224 39 1 3.8113 3.0561 3.4626 40 1 -0.6215 3.5767 3.9326 41 1 0.0558 3.9398 2.3271 42 1 -1.6543 3.4726 2.4867 43 1 -2.5148 1.7421 4.1924 44 1 -2.8345 0.0177 3.8868 45 1 -1.3530 0.5102 4.7412 46 1 -4.3018 -1.2494 1.7563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609897813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:04 Heat of formation + Delta-G solvation = -31.270340 kcal Electronic energy + Delta-G solvation = -28456.538047 eV Core-core repulsion = 24860.103111 eV Total energy + Delta-G solvation = -3596.434936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.55628 -37.32047 -36.37092 -35.31341 -34.29706 -32.99375 -32.61754 -29.76360 -29.16829 -28.67934 -25.59134 -25.34327 -23.93150 -23.64623 -21.88791 -20.74053 -20.05299 -18.41500 -17.20945 -16.82177 -16.33360 -16.00534 -15.51221 -15.14090 -14.60109 -14.36469 -13.88915 -13.61505 -13.51410 -13.18815 -13.07998 -12.97530 -12.78051 -12.55414 -12.12170 -11.97086 -11.91302 -11.72773 -11.53369 -11.47558 -11.29550 -11.12883 -11.00650 -10.91696 -10.83441 -10.65443 -10.52529 -10.29410 -10.15668 -10.01005 -9.85836 -9.55213 -9.22797 -9.00025 -8.49333 -8.43612 -7.97532 -6.11155 -4.17135 0.90758 1.16863 1.47439 3.23479 3.31717 3.33463 3.49396 3.78731 4.30548 4.35487 4.67018 4.82144 4.92293 5.08143 5.19200 5.25197 5.42135 5.49031 5.54865 5.58973 5.63365 5.78865 5.89897 6.02939 6.08139 6.11642 6.14553 6.20323 6.31193 6.37052 6.46381 6.51562 6.55780 6.63537 6.69258 6.85178 6.86492 6.86533 7.01861 7.07259 7.09149 7.42612 7.47011 7.61520 7.78120 8.02241 8.23147 8.83166 9.46990 10.93996 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.006067 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.023548 B = 4613.981400 C = 5260.300796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.140 4.140 3 C 0.043 3.957 4 C -0.155 4.155 5 C -0.064 4.064 6 C -0.157 4.157 7 C 0.022 3.978 8 C -0.118 4.118 9 C -0.136 4.136 10 C -0.675 4.675 11 S 2.677 3.323 12 O -0.970 6.970 13 O -0.954 6.954 14 N -0.981 5.981 15 C 0.090 3.910 16 C 0.258 3.742 17 H 0.076 0.924 18 C -0.148 4.148 19 C -0.520 4.520 20 H 0.064 0.936 21 C 0.069 3.931 22 N -0.883 5.883 23 Si 0.890 3.110 24 H -0.281 1.281 25 H -0.274 1.274 26 H -0.286 1.286 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.033 0.967 44 H 0.094 0.906 45 H 0.010 0.990 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.606 7.792 -2.815 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.178 4.178 3 C 0.042 3.958 4 C -0.174 4.174 5 C -0.082 4.082 6 C -0.176 4.176 7 C 0.021 3.979 8 C -0.155 4.155 9 C -0.193 4.193 10 C -0.761 4.761 11 S 2.770 3.230 12 O -0.960 6.960 13 O -0.944 6.944 14 N -0.822 5.822 15 C -0.056 4.056 16 C 0.156 3.844 17 H 0.093 0.907 18 C -0.208 4.208 19 C -0.560 4.560 20 H 0.082 0.918 21 C -0.134 4.134 22 N -0.521 5.521 23 Si 0.718 3.282 24 H -0.207 1.207 25 H -0.199 1.199 26 H -0.211 1.211 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.052 0.948 44 H 0.113 0.887 45 H 0.030 0.970 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.933 7.130 -2.191 13.236 hybrid contribution -0.765 0.796 -1.788 2.101 sum 10.169 7.926 -3.979 13.493 Atomic orbital electron populations 1.22220 0.91094 1.04975 1.02902 1.21679 0.99366 0.91231 1.05518 1.19822 0.89307 0.95673 0.91018 1.21159 1.02283 0.95932 0.98022 1.21320 0.95264 0.93963 0.97654 1.21010 1.03474 1.00282 0.92828 1.19604 0.91200 0.91634 0.95456 1.21253 1.01943 0.98994 0.93333 1.21694 0.94660 1.04101 0.98855 1.30761 1.19335 1.05165 1.20809 1.02310 0.73036 0.73618 0.74035 1.93531 1.74706 1.76246 1.51475 1.93437 1.86241 1.28951 1.85796 1.57411 1.22830 1.14448 1.87491 1.21534 1.03139 0.80784 1.00147 1.19026 0.84644 0.86501 0.94211 0.90691 1.22139 1.00877 1.01768 0.96015 1.21240 1.08949 1.08103 1.17661 0.91816 1.24839 0.97472 0.94828 0.96235 1.69868 1.30012 1.12228 1.39999 0.86624 0.81397 0.78017 0.82179 1.20671 1.19891 1.21139 0.94208 0.91581 0.88157 0.91821 0.85100 0.85637 0.85873 0.85788 0.90777 0.88486 0.93877 0.92269 0.90483 0.93366 0.93094 0.89281 0.94809 0.88737 0.97046 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 7.95 37.16 0.30 -2.86 16 2 C -0.14 -2.51 5.34 -27.88 -0.15 -2.66 16 3 C 0.04 0.74 5.16 -104.62 -0.54 0.20 16 4 C -0.16 -2.25 9.67 -39.59 -0.38 -2.64 16 5 C -0.06 -0.82 10.05 -39.58 -0.40 -1.21 16 6 C -0.16 -2.09 9.70 -39.58 -0.38 -2.48 16 7 C 0.02 0.35 4.78 -104.62 -0.50 -0.15 16 8 C -0.12 -1.67 4.47 -27.88 -0.12 -1.79 16 9 C -0.14 -1.85 9.25 37.16 0.34 -1.51 16 10 C -0.67 -11.90 5.68 -39.58 -0.22 -12.13 16 11 S 2.68 52.32 4.41 -107.50 -0.47 51.85 16 12 O -0.97 -18.91 12.22 -57.17 -0.70 -19.61 16 13 O -0.95 -20.56 11.27 -57.17 -0.64 -21.20 16 14 N -0.98 -19.81 2.60 -115.85 -0.30 -20.11 16 15 C 0.09 1.55 8.75 59.85 0.52 2.07 16 16 C 0.26 6.03 1.59 -69.08 -0.11 5.92 16 17 H 0.08 1.91 5.43 -51.93 -0.28 1.63 16 18 C -0.15 -3.42 9.06 37.16 0.34 -3.08 16 19 C -0.52 -12.70 5.80 -34.44 -0.20 -12.90 16 20 H 0.06 1.54 6.96 -52.49 -0.37 1.17 16 21 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -23.31 11.32 55.43 0.63 -22.68 16 23 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.41 8.14 -51.92 -0.42 0.98 16 29 H 0.10 2.18 1.77 -51.93 -0.09 2.09 16 30 H 0.06 0.96 7.96 -51.93 -0.41 0.55 16 31 H 0.13 2.50 5.10 -52.57 -0.27 2.23 16 32 H 0.13 1.53 8.01 -52.48 -0.42 1.11 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.10 1.48 2.97 -51.93 -0.15 1.33 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.21 6.23 -51.93 -0.32 0.88 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.76 5.03 -51.93 -0.26 0.50 16 42 H 0.09 1.58 6.61 -51.93 -0.34 1.23 16 43 H 0.03 0.73 7.85 -51.93 -0.41 0.32 16 44 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 45 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -27.96 346.57 -9.48 -37.44 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.58 Total: 7.68 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: -1.61 Total: -33.55 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.33 Total: -42.79 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.34 Total: -40.82 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 52.32 SS G_CDS: -0.47 Total: 51.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.96 -9.48 -37.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609897813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.165 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds