Wall clock time and date at job start Tue Mar 31 2020 14:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46709 * 2 1 4 4 C 1.38238 * 120.00210 * 255.52879 * 3 2 1 5 5 C 1.38225 * 120.00306 * 180.25282 * 4 3 2 6 6 C 1.38242 * 119.99700 * 359.76547 * 5 4 3 7 7 C 1.38227 * 120.00324 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00337 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46954 * 270.42570 * 8 7 6 10 10 C 1.38238 * 119.99934 * 75.31523 * 3 2 1 11 11 S 1.76196 * 120.00112 * 359.97438 * 10 3 2 12 12 O 1.42095 * 106.40310 * 151.38464 * 11 10 3 13 13 O 1.42105 * 106.40055 * 18.47106 * 11 10 3 14 14 N 1.65597 * 107.21973 * 264.92965 * 11 10 3 15 15 C 1.46503 * 119.99734 * 294.52546 * 14 11 10 16 16 C 1.46499 * 120.00010 * 114.52767 * 14 11 10 17 17 H 1.09000 * 109.47156 * 353.25060 * 16 14 11 18 18 C 1.53002 * 109.47332 * 113.25467 * 16 14 11 19 19 C 1.50700 * 109.46999 * 233.25396 * 16 14 11 20 20 H 1.08000 * 120.00180 * 359.97438 * 19 16 14 21 21 C 1.37875 * 119.99940 * 180.02562 * 19 16 14 22 22 N 1.31515 * 120.00162 * 359.97438 * 21 19 16 23 23 Si 1.86808 * 119.99967 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.46957 * 269.99669 * 23 21 19 25 25 H 1.48498 * 109.47182 * 29.99563 * 23 21 19 26 26 H 1.48498 * 109.47082 * 149.99863 * 23 21 19 27 27 H 1.09002 * 109.47247 * 73.54448 * 1 2 3 28 28 H 1.09008 * 109.47040 * 193.53481 * 1 2 3 29 29 H 1.08997 * 109.47778 * 313.53637 * 1 2 3 30 30 H 1.09003 * 109.46934 * 240.00129 * 2 1 3 31 31 H 1.08999 * 109.47062 * 119.99872 * 2 1 3 32 32 H 1.08003 * 119.99589 * 0.04067 * 4 3 2 33 33 H 1.07995 * 120.00418 * 179.78919 * 5 4 3 34 34 H 1.08005 * 119.99748 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47004 * 30.42454 * 8 7 6 36 36 H 1.08999 * 109.47156 * 150.42760 * 8 7 6 37 37 H 1.08997 * 109.47423 * 59.99768 * 9 8 7 38 38 H 1.08998 * 109.47096 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.47170 * 299.99782 * 9 8 7 40 40 H 1.08995 * 109.47325 * 275.71339 * 15 14 11 41 41 H 1.08991 * 109.47106 * 35.71883 * 15 14 11 42 42 H 1.09001 * 109.46570 * 155.71480 * 15 14 11 43 43 H 1.09001 * 109.46622 * 59.99922 * 18 16 14 44 44 H 1.08995 * 109.46997 * 180.02562 * 18 16 14 45 45 H 1.09003 * 109.46588 * 300.00040 * 18 16 14 46 46 H 0.97004 * 119.99702 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.5447 1.9729 -1.1592 5 6 3.0102 3.2744 -1.1579 6 6 2.9588 4.0256 0.0015 7 6 2.4424 3.4751 1.1595 8 6 2.3870 4.2939 2.4235 9 6 3.6871 4.1088 3.2085 10 6 1.9765 2.1737 1.1581 11 16 1.3175 1.4722 2.6340 12 8 1.9654 2.1293 3.7145 13 8 1.3424 0.0628 2.4542 14 7 -0.2788 1.9055 2.7125 15 6 -0.6483 3.3138 2.8751 16 6 -1.3214 0.8806 2.6193 17 1 -0.8657 -0.0809 2.3829 18 6 -2.0591 0.7805 3.9560 19 6 -2.2976 1.2544 1.5337 20 1 -2.1557 2.1645 0.9698 21 6 -3.3723 0.4349 1.2610 22 7 -3.5454 -0.6731 1.9480 23 14 -4.5819 0.8978 -0.0852 24 1 -5.6741 1.7215 0.4926 25 1 -3.8786 1.6756 -1.1366 26 1 -5.1547 -0.3357 -0.6816 27 1 -0.3634 0.2911 -0.9856 28 1 -0.3633 -0.9992 0.2405 29 1 -0.3634 0.7078 0.7449 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.5845 1.3860 -2.0650 33 1 3.4136 3.7045 -2.0626 34 1 3.3229 5.0425 0.0026 35 1 2.2627 5.3465 2.1693 36 1 1.5449 3.9653 3.0326 37 1 4.5292 4.4373 2.5994 38 1 3.6472 4.7013 4.1224 39 1 3.8113 3.0561 3.4626 40 1 -0.6215 3.5767 3.9326 41 1 0.0558 3.9398 2.3271 42 1 -1.6543 3.4726 2.4867 43 1 -2.5148 1.7421 4.1924 44 1 -2.8345 0.0177 3.8868 45 1 -1.3530 0.5102 4.7412 46 1 -4.3018 -1.2494 1.7563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609897813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:04 Heat of formation + Delta-G solvation = -46.185398 kcal Electronic energy + Delta-G solvation = -28457.184812 eV Core-core repulsion = 24860.103111 eV Total energy + Delta-G solvation = -3597.081701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69035 -38.82398 -38.03601 -36.85503 -35.55039 -34.47995 -34.14835 -31.15347 -30.72540 -29.92818 -27.27459 -27.08183 -25.03849 -24.96387 -23.17866 -22.45428 -21.27150 -19.87510 -18.72421 -18.31198 -18.05249 -17.35419 -16.84466 -16.57783 -16.17465 -15.56826 -15.31331 -15.08193 -14.90623 -14.60544 -14.43160 -14.39641 -14.18334 -13.83563 -13.63189 -13.44352 -13.24591 -13.13206 -12.95270 -12.94939 -12.81285 -12.77570 -12.64393 -12.46050 -12.36603 -12.13234 -12.03656 -12.02422 -11.62621 -11.47133 -11.30364 -11.07068 -10.89780 -10.44356 -10.21760 -9.60093 -9.57204 -8.04862 -6.15140 -0.47342 -0.08401 0.36066 1.44382 1.47574 1.54773 2.11406 2.47383 2.55237 2.87576 3.23968 3.42980 3.67405 3.77550 3.95443 4.10622 4.26666 4.34885 4.36835 4.47861 4.52484 4.61810 4.63703 4.73698 4.77169 4.80161 4.95268 4.97102 4.99116 5.00649 5.11702 5.13477 5.18650 5.22678 5.29096 5.32536 5.39498 5.45531 5.57422 5.61378 5.65375 5.74314 5.80489 5.92211 5.98088 6.13468 6.33385 6.89855 7.50953 9.00176 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.006067 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.023548 B = 4613.981400 C = 5260.300796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C 0.017 3.983 4 C -0.159 4.159 5 C -0.053 4.053 6 C -0.151 4.151 7 C 0.012 3.988 8 C -0.124 4.124 9 C -0.137 4.137 10 C -0.688 4.688 11 S 2.676 3.324 12 O -0.977 6.977 13 O -0.985 6.985 14 N -0.989 5.989 15 C 0.084 3.916 16 C 0.265 3.735 17 H 0.046 0.954 18 C -0.144 4.144 19 C -0.513 4.513 20 H 0.066 0.934 21 C 0.026 3.974 22 N -0.913 5.913 23 Si 0.944 3.056 24 H -0.276 1.276 25 H -0.269 1.269 26 H -0.290 1.290 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.016 0.984 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.123 10.964 -4.995 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.016 3.984 4 C -0.177 4.177 5 C -0.070 4.070 6 C -0.169 4.169 7 C 0.010 3.990 8 C -0.161 4.161 9 C -0.195 4.195 10 C -0.778 4.778 11 S 2.773 3.227 12 O -0.967 6.967 13 O -0.976 6.976 14 N -0.829 5.829 15 C -0.061 4.061 16 C 0.162 3.838 17 H 0.064 0.936 18 C -0.204 4.204 19 C -0.553 4.553 20 H 0.084 0.916 21 C -0.174 4.174 22 N -0.552 5.552 23 Si 0.770 3.230 24 H -0.202 1.202 25 H -0.193 1.193 26 H -0.216 1.216 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.166 0.834 33 H 0.184 0.816 34 H 0.179 0.821 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.035 0.965 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.436 10.307 -4.326 16.721 hybrid contribution -1.108 -0.123 -1.138 1.593 sum 11.328 10.184 -5.464 16.183 Atomic orbital electron populations 1.22139 0.93408 1.03038 1.02584 1.21522 0.97364 0.92779 1.05782 1.19824 0.91282 0.95085 0.92244 1.21483 1.01477 0.97163 0.97618 1.21836 0.93238 0.92873 0.99086 1.21476 1.01789 1.01860 0.91803 1.19878 0.91334 0.90777 0.97009 1.21338 1.01383 1.00672 0.92683 1.21698 0.95419 1.02512 0.99843 1.30315 1.21286 1.06660 1.19528 1.02037 0.72748 0.73093 0.74787 1.93525 1.74431 1.76051 1.52661 1.93416 1.86516 1.31149 1.86501 1.57310 1.22495 1.14976 1.88076 1.21724 1.03403 0.79594 1.01364 1.18660 0.84983 0.86330 0.93847 0.93622 1.22045 1.00437 1.01483 0.96397 1.21390 1.08694 1.07726 1.17464 0.91627 1.25478 0.99066 0.94859 0.98011 1.69994 1.30569 1.13211 1.41461 0.85776 0.79629 0.77500 0.80081 1.20215 1.19331 1.21558 0.93633 0.94116 0.89400 0.89356 0.87086 0.83406 0.81603 0.82101 0.87431 0.90203 0.91718 0.91199 0.93337 0.92215 0.90669 0.89964 0.93866 0.90919 0.96532 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.51 7.95 71.98 0.57 -5.94 16 2 C -0.14 -4.95 5.34 29.85 0.16 -4.79 16 3 C 0.02 0.57 5.16 -19.86 -0.10 0.47 16 4 C -0.16 -4.05 9.67 22.27 0.22 -3.84 16 5 C -0.05 -1.06 10.05 22.27 0.22 -0.84 16 6 C -0.15 -3.24 9.70 22.27 0.22 -3.02 16 7 C 0.01 0.32 4.78 -19.87 -0.09 0.23 16 8 C -0.12 -3.14 4.47 29.85 0.13 -3.00 16 9 C -0.14 -3.43 9.25 71.98 0.67 -2.76 16 10 C -0.69 -23.59 5.68 22.27 0.13 -23.47 16 11 S 2.68 107.10 4.41 -56.49 -0.25 106.85 16 12 O -0.98 -38.71 12.22 -128.00 -1.56 -40.28 16 13 O -0.99 -44.96 11.27 -128.00 -1.44 -46.41 16 14 N -0.99 -40.64 2.60 -520.45 -1.35 -42.00 16 15 C 0.08 2.85 8.75 127.77 1.12 3.97 16 16 C 0.27 12.82 1.59 44.25 0.07 12.89 16 17 H 0.05 2.49 5.43 -2.39 -0.01 2.48 16 18 C -0.14 -6.87 9.06 71.98 0.65 -6.22 16 19 C -0.51 -25.49 5.80 25.60 0.15 -25.35 16 20 H 0.07 3.17 6.96 -2.91 -0.02 3.15 16 21 C 0.03 1.33 5.30 84.65 0.45 1.78 16 22 N -0.91 -49.86 11.32 21.45 0.24 -49.62 16 23 Si 0.94 41.24 29.54 68.60 2.03 43.27 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.09 3.94 1.77 -2.39 0.00 3.93 16 30 H 0.09 2.63 7.96 -2.39 -0.02 2.62 16 31 H 0.11 4.47 5.10 -12.49 -0.06 4.41 16 32 H 0.15 3.02 8.01 -2.91 -0.02 3.00 16 33 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.11 1.97 8.09 -2.39 -0.02 1.95 16 36 H 0.08 2.30 2.97 -2.39 -0.01 2.29 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.48 6.23 -2.39 -0.01 1.47 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 2.15 5.03 -2.39 -0.01 2.14 16 42 H 0.08 2.87 6.61 -2.39 -0.02 2.85 16 43 H 0.04 1.91 7.85 -2.39 -0.02 1.89 16 44 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.26 13.76 8.31 -92.70 -0.77 12.99 16 Total: -1.00 -63.02 346.57 3.15 -59.86 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.94 Total: 28.20 kcal Atomic # 6 Polarization: -64.44 SS G_CDS: 4.55 Total: -59.88 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -1.11 Total: -91.62 kcal Atomic # 8 Polarization: -83.68 SS G_CDS: -3.01 Total: -86.69 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 107.10 SS G_CDS: -0.25 Total: 106.85 kcal Total: -63.02 3.15 -59.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609897813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.678 kcal (2) G-P(sol) polarization free energy of solvation -63.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds