Wall clock time and date at job start Tue Mar 31 2020 14:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47578 * 2 1 4 4 C 1.38229 * 120.00056 * 270.90499 * 3 2 1 5 5 C 1.38237 * 120.00192 * 180.27731 * 4 3 2 6 6 C 1.38245 * 119.99221 * 359.46454 * 5 4 3 7 7 C 1.38226 * 120.00509 * 0.53122 * 6 5 4 8 8 C 1.50691 * 120.00545 * 179.76713 * 7 6 5 9 9 C 1.53003 * 109.47326 * 259.10385 * 8 7 6 10 10 C 1.38233 * 119.99830 * 90.92192 * 3 2 1 11 11 S 1.76203 * 119.99979 * 359.97438 * 10 3 2 12 12 O 1.42103 * 106.40335 * 180.43385 * 11 10 3 13 13 O 1.42101 * 106.40134 * 313.35073 * 11 10 3 14 14 N 1.65600 * 107.22179 * 66.89108 * 11 10 3 15 15 C 1.46505 * 119.99624 * 67.68878 * 14 11 10 16 16 C 1.52995 * 109.46818 * 166.08132 * 15 14 11 17 17 C 1.53002 * 109.47082 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47146 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99709 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00027 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00356 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00398 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46662 * 59.99694 * 22 20 18 24 24 H 1.48492 * 109.47696 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47053 * 300.00556 * 22 20 18 26 26 H 1.08997 * 109.47403 * 187.05846 * 1 2 3 27 27 H 1.09003 * 109.46490 * 307.06243 * 1 2 3 28 28 H 1.09002 * 109.47377 * 67.05473 * 1 2 3 29 29 H 1.09005 * 109.46777 * 240.00244 * 2 1 3 30 30 H 1.09002 * 109.47093 * 120.00356 * 2 1 3 31 31 H 1.07997 * 120.00339 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.00518 * 179.72098 * 5 4 3 33 33 H 1.07999 * 119.99504 * 180.30456 * 6 5 4 34 34 H 1.09003 * 109.46944 * 19.10119 * 8 7 6 35 35 H 1.08999 * 109.47798 * 139.09902 * 8 7 6 36 36 H 1.09001 * 109.46709 * 305.30370 * 9 8 7 37 37 H 1.09000 * 109.47234 * 65.30986 * 9 8 7 38 38 H 1.09005 * 109.46823 * 185.31148 * 9 8 7 39 39 H 0.96995 * 119.99874 * 247.69160 * 14 11 10 40 40 H 1.08992 * 109.47330 * 286.07887 * 15 14 11 41 41 H 1.08999 * 109.47030 * 46.07872 * 15 14 11 42 42 H 1.09006 * 109.47413 * 299.99663 * 16 15 14 43 43 H 1.08999 * 109.47532 * 60.00048 * 16 15 14 44 44 H 1.09005 * 109.46686 * 299.99427 * 17 16 15 45 45 H 1.08996 * 109.47603 * 59.99802 * 17 16 15 46 46 H 0.97003 * 120.00605 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2451 2.0787 -1.1969 5 6 2.7114 3.3800 -1.1971 6 6 2.9546 4.0271 0.0001 7 6 2.7419 3.3693 1.1971 8 6 3.0120 4.0728 2.5020 9 6 4.3621 3.6158 3.0580 10 6 2.2810 2.0660 1.1970 11 16 2.0098 1.2273 2.7227 12 8 2.3425 2.1490 3.7519 13 8 0.7362 0.6057 2.6181 14 7 3.1215 0.0033 2.8138 15 6 4.5454 0.3163 2.9581 16 6 5.3068 -0.9474 3.3629 17 6 6.7938 -0.6204 3.5143 18 6 7.5437 -1.8651 3.9137 19 1 7.0128 -2.7961 4.0467 20 6 8.9076 -1.8153 4.1092 21 7 9.5541 -0.6815 3.9477 22 14 9.8372 -3.3579 4.6049 23 1 9.6623 -4.3984 3.5599 24 1 11.2803 -3.0406 4.7517 25 1 9.3075 -3.8610 5.8978 26 1 -0.3634 -1.0198 0.1263 27 1 -0.3632 0.6194 0.8201 28 1 -0.3634 0.4006 -0.9464 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 2.0515 1.5745 -2.1322 32 1 2.8818 3.8926 -2.1323 33 1 3.3142 5.0454 0.0001 34 1 3.0331 5.1500 2.3364 35 1 2.2244 3.8303 3.2154 36 1 4.3741 2.5286 3.1349 37 1 5.1593 3.9417 2.3899 38 1 4.5147 4.0516 4.0454 39 1 2.8298 -0.9208 2.7716 40 1 4.9340 0.6864 2.0095 41 1 4.6736 1.0795 3.7258 42 1 4.9182 -1.3176 4.3118 43 1 5.1785 -1.7105 2.5953 44 1 7.1827 -0.2502 2.5657 45 1 6.9218 0.1425 4.2821 46 1 10.5136 -0.6463 4.0857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609897930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:55 Heat of formation + Delta-G solvation = -60.748745 kcal Electronic energy + Delta-G solvation = -26658.995108 eV Core-core repulsion = 23061.281893 eV Total energy + Delta-G solvation = -3597.713215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.89338 -37.70352 -36.11393 -35.89482 -34.73979 -33.41880 -33.19991 -30.87768 -30.12038 -29.14408 -26.42730 -24.34008 -24.23090 -23.04504 -22.28349 -20.73717 -20.30822 -19.39331 -17.67726 -17.18034 -16.69558 -16.26186 -15.91813 -15.48273 -14.81749 -14.74986 -14.59820 -14.47370 -14.06537 -13.75692 -13.67725 -13.37138 -12.98671 -12.56215 -12.45586 -12.37682 -12.29107 -12.21651 -12.02440 -11.76833 -11.66163 -11.52924 -11.39239 -11.09746 -10.96665 -10.89446 -10.81390 -10.60985 -10.45209 -10.05970 -9.92507 -9.50016 -9.39033 -9.24018 -9.11644 -8.79348 -8.37752 -6.02889 -4.05677 0.43555 0.73880 1.14175 3.02278 3.31777 3.34498 3.36529 3.38823 3.79953 4.30880 4.42084 4.43867 4.59143 4.64581 4.91885 5.08806 5.12620 5.20374 5.21704 5.33047 5.33446 5.41333 5.51602 5.56741 5.60931 5.71126 5.78648 5.82660 5.88326 5.92144 5.92316 6.08844 6.15709 6.20289 6.20823 6.35546 6.47942 6.51050 6.59981 6.72222 6.74900 6.93815 7.13521 7.61544 7.74312 7.95616 8.37354 9.00569 9.58615 11.08312 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.003431 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.618833 B = 8160.002245 C = 8490.511708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.028 3.972 4 C -0.150 4.150 5 C -0.059 4.059 6 C -0.150 4.150 7 C 0.030 3.970 8 C -0.123 4.123 9 C -0.144 4.144 10 C -0.677 4.677 11 S 2.685 3.315 12 O -0.949 6.949 13 O -0.962 6.962 14 N -1.114 6.114 15 C 0.109 3.891 16 C -0.115 4.115 17 C 0.022 3.978 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.416 0.584 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.018 0.982 45 H 0.020 0.980 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.983 8.175 -9.889 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C 0.027 3.973 4 C -0.169 4.169 5 C -0.077 4.077 6 C -0.169 4.169 7 C 0.029 3.971 8 C -0.160 4.160 9 C -0.201 4.201 10 C -0.764 4.764 11 S 2.776 3.224 12 O -0.939 6.939 13 O -0.952 6.952 14 N -0.875 5.875 15 C -0.015 4.015 16 C -0.155 4.155 17 C -0.016 4.016 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.088 0.912 35 H 0.138 0.862 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.251 0.749 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.037 0.963 45 H 0.038 0.962 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.367 8.649 -9.242 21.490 hybrid contribution 1.021 -0.996 -0.733 1.603 sum -16.346 7.653 -9.975 20.622 Atomic orbital electron populations 1.21839 0.92907 1.03236 1.02563 1.20926 0.98100 0.91716 1.03802 1.19530 0.90805 0.95101 0.91904 1.21078 1.02789 0.95471 0.97581 1.21407 0.93725 0.94343 0.98206 1.21180 1.03101 1.00680 0.91909 1.19773 0.89482 0.91315 0.96548 1.21404 1.02116 0.99179 0.93331 1.21918 0.94280 1.02991 1.00911 1.30559 1.18811 1.07268 1.19746 1.02096 0.72930 0.73078 0.74301 1.93576 1.83905 1.61419 1.55013 1.93573 1.38554 1.75866 1.87191 1.55572 1.19919 1.21479 1.90560 1.21798 0.77617 1.00939 1.01174 1.21862 0.98699 0.94333 1.00577 1.19070 0.87794 0.97286 0.97443 1.21167 0.92536 0.95574 1.46806 0.92674 1.25008 0.97818 0.96045 0.95477 1.69946 1.08694 1.25185 1.49512 0.86653 0.78742 0.83433 0.79130 1.20277 1.21289 1.20221 0.91885 0.89890 0.93124 0.89668 0.91021 0.85382 0.85432 0.85278 0.91191 0.86166 0.91551 0.93362 0.91485 0.74917 0.92164 0.89823 0.92322 0.92598 0.96344 0.96157 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.33 37.16 0.35 -1.21 16 2 C -0.11 -1.17 5.30 -27.88 -0.15 -1.32 16 3 C 0.03 0.33 5.12 -104.63 -0.54 -0.20 16 4 C -0.15 -1.57 9.71 -39.58 -0.38 -1.95 16 5 C -0.06 -0.57 10.05 -39.58 -0.40 -0.97 16 6 C -0.15 -1.62 9.67 -39.58 -0.38 -2.01 16 7 C 0.03 0.38 5.14 -104.63 -0.54 -0.15 16 8 C -0.12 -1.53 5.32 -27.89 -0.15 -1.68 16 9 C -0.14 -1.97 8.94 37.16 0.33 -1.63 16 10 C -0.68 -8.91 5.88 -39.58 -0.23 -9.14 16 11 S 2.68 37.26 4.58 -107.50 -0.49 36.77 16 12 O -0.95 -14.67 11.14 -57.17 -0.64 -15.31 16 13 O -0.96 -14.27 13.91 -57.17 -0.80 -15.06 16 14 N -1.11 -15.08 5.06 -10.62 -0.05 -15.13 16 15 C 0.11 1.75 4.95 -4.04 -0.02 1.73 16 16 C -0.12 -2.20 5.29 -26.73 -0.14 -2.34 16 17 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 18 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 19 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 22 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.03 6.06 -51.93 -0.31 0.71 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.07 0.79 5.07 -51.93 -0.26 0.52 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.11 8.03 -52.49 -0.42 0.69 16 34 H 0.07 0.71 7.99 -51.93 -0.42 0.30 16 35 H 0.12 1.60 5.40 -52.31 -0.28 1.32 16 36 H 0.07 0.97 2.53 -51.93 -0.13 0.84 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.42 4.87 8.19 -34.47 -0.28 4.58 16 40 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 41 H 0.08 1.37 5.79 -51.93 -0.30 1.07 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -31.94 365.67 -10.58 -42.51 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.02 Total: 3.66 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: -2.80 Total: -33.63 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.68 Total: -40.73 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.43 Total: -30.37 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 37.26 SS G_CDS: -0.49 Total: 36.77 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.94 -10.58 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609897930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.235 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds