Wall clock time and date at job start Tue Mar 31 2020 14:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47578 * 2 1 4 4 C 1.38229 * 120.00056 * 270.90499 * 3 2 1 5 5 C 1.38237 * 120.00192 * 180.27731 * 4 3 2 6 6 C 1.38245 * 119.99221 * 359.46454 * 5 4 3 7 7 C 1.38226 * 120.00509 * 0.53122 * 6 5 4 8 8 C 1.50691 * 120.00545 * 179.76713 * 7 6 5 9 9 C 1.53003 * 109.47326 * 259.10385 * 8 7 6 10 10 C 1.38233 * 119.99830 * 90.92192 * 3 2 1 11 11 S 1.76203 * 119.99979 * 359.97438 * 10 3 2 12 12 O 1.42103 * 106.40335 * 180.43385 * 11 10 3 13 13 O 1.42101 * 106.40134 * 313.35073 * 11 10 3 14 14 N 1.65600 * 107.22179 * 66.89108 * 11 10 3 15 15 C 1.46505 * 119.99624 * 67.68878 * 14 11 10 16 16 C 1.52995 * 109.46818 * 166.08132 * 15 14 11 17 17 C 1.53002 * 109.47082 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47146 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99709 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00027 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00356 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00398 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46662 * 59.99694 * 22 20 18 24 24 H 1.48492 * 109.47696 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47053 * 300.00556 * 22 20 18 26 26 H 1.08997 * 109.47403 * 187.05846 * 1 2 3 27 27 H 1.09003 * 109.46490 * 307.06243 * 1 2 3 28 28 H 1.09002 * 109.47377 * 67.05473 * 1 2 3 29 29 H 1.09005 * 109.46777 * 240.00244 * 2 1 3 30 30 H 1.09002 * 109.47093 * 120.00356 * 2 1 3 31 31 H 1.07997 * 120.00339 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.00518 * 179.72098 * 5 4 3 33 33 H 1.07999 * 119.99504 * 180.30456 * 6 5 4 34 34 H 1.09003 * 109.46944 * 19.10119 * 8 7 6 35 35 H 1.08999 * 109.47798 * 139.09902 * 8 7 6 36 36 H 1.09001 * 109.46709 * 305.30370 * 9 8 7 37 37 H 1.09000 * 109.47234 * 65.30986 * 9 8 7 38 38 H 1.09005 * 109.46823 * 185.31148 * 9 8 7 39 39 H 0.96995 * 119.99874 * 247.69160 * 14 11 10 40 40 H 1.08992 * 109.47330 * 286.07887 * 15 14 11 41 41 H 1.08999 * 109.47030 * 46.07872 * 15 14 11 42 42 H 1.09006 * 109.47413 * 299.99663 * 16 15 14 43 43 H 1.08999 * 109.47532 * 60.00048 * 16 15 14 44 44 H 1.09005 * 109.46686 * 299.99427 * 17 16 15 45 45 H 1.08996 * 109.47603 * 59.99802 * 17 16 15 46 46 H 0.97003 * 120.00605 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2451 2.0787 -1.1969 5 6 2.7114 3.3800 -1.1971 6 6 2.9546 4.0271 0.0001 7 6 2.7419 3.3693 1.1971 8 6 3.0120 4.0728 2.5020 9 6 4.3621 3.6158 3.0580 10 6 2.2810 2.0660 1.1970 11 16 2.0098 1.2273 2.7227 12 8 2.3425 2.1490 3.7519 13 8 0.7362 0.6057 2.6181 14 7 3.1215 0.0033 2.8138 15 6 4.5454 0.3163 2.9581 16 6 5.3068 -0.9474 3.3629 17 6 6.7938 -0.6204 3.5143 18 6 7.5437 -1.8651 3.9137 19 1 7.0128 -2.7961 4.0467 20 6 8.9076 -1.8153 4.1092 21 7 9.5541 -0.6815 3.9477 22 14 9.8372 -3.3579 4.6049 23 1 9.6623 -4.3984 3.5599 24 1 11.2803 -3.0406 4.7517 25 1 9.3075 -3.8610 5.8978 26 1 -0.3634 -1.0198 0.1263 27 1 -0.3632 0.6194 0.8201 28 1 -0.3634 0.4006 -0.9464 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 2.0515 1.5745 -2.1322 32 1 2.8818 3.8926 -2.1323 33 1 3.3142 5.0454 0.0001 34 1 3.0331 5.1500 2.3364 35 1 2.2244 3.8303 3.2154 36 1 4.3741 2.5286 3.1349 37 1 5.1593 3.9417 2.3899 38 1 4.5147 4.0516 4.0454 39 1 2.8298 -0.9208 2.7716 40 1 4.9340 0.6864 2.0095 41 1 4.6736 1.0795 3.7258 42 1 4.9182 -1.3176 4.3118 43 1 5.1785 -1.7105 2.5953 44 1 7.1827 -0.2502 2.5657 45 1 6.9218 0.1425 4.2821 46 1 10.5136 -0.6463 4.0857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609897930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:55 Heat of formation + Delta-G solvation = -79.446879 kcal Electronic energy + Delta-G solvation = -26659.805920 eV Core-core repulsion = 23061.281893 eV Total energy + Delta-G solvation = -3598.524027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72873 -38.80763 -37.50009 -37.03293 -35.67398 -35.17000 -34.21374 -32.64150 -31.00636 -30.00713 -28.22200 -25.32292 -25.08608 -24.71494 -23.18702 -22.29383 -21.26445 -20.52057 -18.72528 -18.56941 -18.18668 -17.50371 -16.80405 -16.63788 -16.42174 -16.18858 -15.71207 -15.60550 -15.06718 -14.75333 -14.60238 -14.28899 -14.23663 -14.07039 -13.82195 -13.75147 -13.38556 -13.25641 -13.19567 -13.03114 -12.77043 -12.72474 -12.66365 -12.51587 -12.42277 -12.22632 -11.93838 -11.77101 -11.64494 -11.62284 -11.40562 -11.17797 -10.96641 -10.51810 -10.43081 -10.28335 -9.63261 -8.17052 -6.27498 -0.61692 -0.15360 0.31033 1.42760 1.45020 1.52773 1.95386 2.43402 2.45826 2.77219 3.16767 3.34062 3.57872 3.68356 3.87663 4.00794 4.16221 4.19812 4.24643 4.30656 4.40527 4.42258 4.48674 4.53793 4.58784 4.62938 4.69763 4.87715 4.91392 4.96525 5.02800 5.07187 5.09215 5.17758 5.21264 5.24564 5.31874 5.40030 5.49025 5.51787 5.53965 5.55422 5.76276 5.87870 5.92096 6.04565 6.27089 6.89056 7.41550 8.94415 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.003431 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.618833 B = 8160.002245 C = 8490.511708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.014 3.986 4 C -0.154 4.154 5 C -0.055 4.055 6 C -0.156 4.156 7 C 0.011 3.989 8 C -0.122 4.122 9 C -0.150 4.150 10 C -0.691 4.691 11 S 2.693 3.307 12 O -0.970 6.970 13 O -0.973 6.973 14 N -1.109 6.109 15 C 0.122 3.878 16 C -0.104 4.104 17 C 0.023 3.977 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.961 3.039 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.269 1.269 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.424 0.576 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.067 0.933 44 H -0.001 1.001 45 H -0.005 1.005 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.460 7.705 -11.741 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.013 3.987 4 C -0.172 4.172 5 C -0.073 4.073 6 C -0.174 4.174 7 C 0.009 3.991 8 C -0.160 4.160 9 C -0.207 4.207 10 C -0.780 4.780 11 S 2.787 3.213 12 O -0.960 6.960 13 O -0.964 6.964 14 N -0.870 5.870 15 C -0.003 4.003 16 C -0.143 4.143 17 C -0.015 4.015 18 C -0.581 4.581 19 H 0.080 0.920 20 C -0.196 4.196 21 N -0.572 5.572 22 Si 0.786 3.214 23 H -0.191 1.191 24 H -0.210 1.210 25 H -0.194 1.194 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.169 0.831 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.261 0.739 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.017 0.983 45 H 0.014 0.986 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.872 8.147 -11.067 22.545 hybrid contribution 1.139 -0.787 -0.222 1.402 sum -16.733 7.360 -11.289 21.485 Atomic orbital electron populations 1.21832 0.92857 1.03349 1.02539 1.21033 0.98204 0.91403 1.04506 1.19780 0.91075 0.95732 0.92136 1.21468 1.01890 0.95880 0.97973 1.21852 0.92058 0.94158 0.99196 1.21512 1.02609 1.01736 0.91589 1.19893 0.90503 0.91420 0.97236 1.21351 1.00746 1.00574 0.93287 1.21956 0.95481 1.02148 1.01113 1.30334 1.20631 1.07741 1.19319 1.01652 0.72496 0.72684 0.74473 1.93560 1.84087 1.61811 1.56540 1.93561 1.38997 1.76230 1.87576 1.55381 1.18639 1.22236 1.90782 1.21482 0.78571 0.99129 1.01140 1.21633 0.95374 0.96020 1.01265 1.18971 0.91343 0.95762 0.95401 1.21656 0.93250 0.96670 1.46513 0.92002 1.25922 0.98971 0.99294 0.95448 1.70080 1.09006 1.27443 1.50646 0.85557 0.77181 0.79495 0.79145 1.19141 1.21040 1.19379 0.91149 0.92149 0.91457 0.87536 0.91768 0.82731 0.82057 0.83125 0.88973 0.87475 0.92900 0.92802 0.91749 0.73921 0.91719 0.90535 0.92073 0.91403 0.98304 0.98612 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.33 71.98 0.67 -2.25 16 2 C -0.11 -2.29 5.30 29.85 0.16 -2.13 16 3 C 0.01 0.32 5.12 -19.87 -0.10 0.22 16 4 C -0.15 -2.75 9.71 22.27 0.22 -2.53 16 5 C -0.05 -0.89 10.05 22.27 0.22 -0.67 16 6 C -0.16 -3.01 9.67 22.27 0.22 -2.80 16 7 C 0.01 0.27 5.14 -19.87 -0.10 0.17 16 8 C -0.12 -3.02 5.32 29.85 0.16 -2.86 16 9 C -0.15 -4.17 8.94 71.98 0.64 -3.52 16 10 C -0.69 -17.79 5.88 22.27 0.13 -17.66 16 11 S 2.69 75.61 4.58 -56.49 -0.26 75.35 16 12 O -0.97 -30.91 11.14 -128.00 -1.43 -32.33 16 13 O -0.97 -29.17 13.91 -128.00 -1.78 -30.95 16 14 N -1.11 -30.00 5.06 -187.50 -0.95 -30.95 16 15 C 0.12 3.96 4.95 86.38 0.43 4.38 16 16 C -0.10 -3.96 5.29 30.59 0.16 -3.80 16 17 C 0.02 1.17 4.97 29.85 0.15 1.32 16 18 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 20 C 0.00 0.09 5.46 84.65 0.46 0.55 16 21 N -0.93 -55.76 13.29 21.44 0.28 -55.48 16 22 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.47 6.06 -2.39 -0.01 1.45 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 1.63 8.09 -2.38 -0.02 1.61 16 30 H 0.06 1.35 5.07 -2.39 -0.01 1.34 16 31 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.15 2.15 8.03 -2.91 -0.02 2.13 16 34 H 0.09 1.78 7.99 -2.39 -0.02 1.76 16 35 H 0.11 2.93 5.40 -8.44 -0.05 2.88 16 36 H 0.05 1.60 2.53 -2.39 -0.01 1.59 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.42 9.77 8.19 -96.75 -0.79 8.98 16 40 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 41 H 0.08 2.61 5.79 -2.39 -0.01 2.59 16 42 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 45 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -69.09 365.67 1.70 -67.39 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.16 Total: 22.80 kcal Atomic # 6 Polarization: -65.03 SS G_CDS: 3.65 Total: -61.38 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -0.66 Total: -86.43 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -3.21 Total: -63.28 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 75.61 SS G_CDS: -0.26 Total: 75.35 kcal Total: -69.09 1.70 -67.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609897930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.060 kcal (2) G-P(sol) polarization free energy of solvation -69.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds