Wall clock time and date at job start Tue Mar 31 2020 14:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34509 * 125.78739 * 2 1 4 4 C 1.41387 * 106.84279 * 180.29735 * 3 2 1 5 5 C 1.34516 * 106.83728 * 359.57535 * 4 3 2 6 6 C 1.50696 * 125.79022 * 180.11534 * 5 4 3 7 7 N 1.46502 * 109.47357 * 90.34219 * 6 5 4 8 8 C 1.34780 * 120.00169 * 101.83876 * 7 6 5 9 9 O 1.21580 * 120.00115 * 187.18986 * 8 7 6 10 10 C 1.47643 * 119.99604 * 7.19480 * 8 7 6 11 11 C 1.40012 * 119.89749 * 329.33654 * 10 8 7 12 12 C 1.36316 * 120.10766 * 179.72258 * 11 10 8 13 13 C 1.40888 * 119.88930 * 0.57592 * 12 11 10 14 14 C 1.41104 * 120.10104 * 179.67831 * 13 12 11 15 15 H 1.08007 * 119.99940 * 213.57563 * 14 13 12 16 16 C 1.40227 * 120.00380 * 33.57661 * 14 13 12 17 17 N 1.30641 * 119.99708 * 6.15423 * 16 14 13 18 18 Si 1.86795 * 120.00166 * 186.15118 * 16 14 13 19 19 H 1.48501 * 109.47179 * 90.00129 * 18 16 14 20 20 H 1.48505 * 109.47279 * 210.00279 * 18 16 14 21 21 H 1.48497 * 109.47322 * 330.00011 * 18 16 14 22 22 C 1.40886 * 119.79306 * 359.69598 * 13 12 11 23 23 C 1.36316 * 119.89543 * 0.02562 * 22 13 12 24 24 C 1.46504 * 120.00000 * 281.84755 * 7 6 5 25 25 C 1.52993 * 117.49705 * 196.06071 * 24 7 6 26 26 C 1.52991 * 117.50241 * 127.43707 * 24 7 6 27 27 O 1.34304 * 125.79218 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46840 * 90.00057 * 1 2 3 29 29 H 1.09007 * 109.46811 * 209.99474 * 1 2 3 30 30 H 1.08998 * 109.47396 * 329.99610 * 1 2 3 31 31 H 1.08001 * 126.58189 * 0.03915 * 3 2 1 32 32 H 1.07994 * 126.58320 * 179.73646 * 4 3 2 33 33 H 1.08997 * 109.47517 * 210.34050 * 6 5 4 34 34 H 1.09004 * 109.47290 * 330.34598 * 6 5 4 35 35 H 1.08002 * 119.94116 * 0.02562 * 11 10 8 36 36 H 1.07998 * 120.05362 * 180.25622 * 12 11 10 37 37 H 0.97002 * 120.00242 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.04870 * 179.97438 * 22 13 12 39 39 H 1.07994 * 119.94954 * 179.97438 * 23 22 13 40 40 H 1.09003 * 115.54900 * 341.76198 * 24 7 6 41 41 H 1.09002 * 117.50473 * 359.97438 * 25 24 7 42 42 H 1.09007 * 117.49806 * 145.01884 * 25 24 7 43 43 H 1.09000 * 117.50410 * 214.97706 * 26 24 7 44 44 H 1.09009 * 117.49787 * 359.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 -0.0070 5 6 3.5814 -0.7121 -0.0014 6 6 4.7706 -1.6378 -0.0031 7 7 5.1573 -1.9387 1.3776 8 6 4.8116 -3.1172 1.9327 9 8 5.0162 -3.3158 3.1146 10 6 4.1844 -4.1670 1.1054 11 6 3.3817 -3.8099 0.0152 12 6 2.8052 -4.7757 -0.7548 13 6 3.0083 -6.1350 -0.4450 14 6 2.4082 -7.1383 -1.2350 15 1 2.0840 -8.0625 -0.7796 16 6 2.2326 -6.9356 -2.6114 17 7 2.7311 -5.8723 -3.1838 18 14 1.2861 -8.1859 -3.6264 19 1 -0.1539 -7.8231 -3.6415 20 1 1.8093 -8.1934 -5.0162 21 1 1.4503 -9.5352 -3.0285 22 6 3.8123 -6.4893 0.6564 23 6 4.3893 -5.5165 1.4173 24 6 5.9197 -0.9584 2.1550 25 6 6.6135 -1.4508 3.4265 26 6 5.3708 -0.5642 3.5275 27 8 2.2925 -1.0894 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.9665 2.1204 0.0006 32 1 4.5211 1.2434 -0.0129 33 1 4.5102 -2.5629 -0.5172 34 1 5.6036 -1.1583 -0.5173 35 1 3.2230 -2.7675 -0.2188 36 1 2.1895 -4.4993 -1.5980 37 1 2.6100 -5.7322 -4.1360 38 1 3.9704 -7.5300 0.8980 39 1 5.0053 -5.7871 2.2620 40 1 6.4230 -0.1861 1.5734 41 1 6.5025 -2.5039 3.6850 42 1 7.5737 -1.0024 3.6818 43 1 5.5133 0.4675 3.8492 44 1 4.4421 -1.0338 3.8520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611146017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:51 Heat of formation + Delta-G solvation = 66.734829 kcal Electronic energy + Delta-G solvation = -27745.419009 eV Core-core repulsion = 24017.789945 eV Total energy + Delta-G solvation = -3727.629064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.48901 -39.96941 -37.55006 -35.88993 -34.85502 -33.60213 -33.03919 -31.63702 -30.05203 -29.61670 -28.09823 -25.99102 -24.32054 -23.10656 -22.10058 -21.79127 -21.08775 -20.85481 -20.05073 -18.80548 -17.52143 -17.08626 -16.39502 -15.76957 -15.67085 -15.36534 -14.81008 -14.75681 -14.29665 -13.96399 -13.62533 -13.31858 -12.99830 -12.97898 -12.86376 -12.68343 -12.66348 -12.54894 -12.26581 -11.87975 -11.86090 -11.54591 -11.29124 -11.21974 -10.99923 -10.93682 -10.71469 -10.54621 -10.13764 -9.94702 -9.71718 -9.41615 -9.34225 -8.75473 -8.25777 -8.04524 -7.67256 -7.44764 -6.91531 -4.60602 1.80972 2.20572 2.69451 2.91403 2.94540 2.98248 3.01544 3.05562 3.45475 3.66469 3.80325 4.20166 4.53798 4.77502 5.01809 5.03092 5.11319 5.15060 5.21632 5.35224 5.44920 5.46310 5.48053 5.64204 5.71479 5.85140 5.89474 5.92240 5.96121 6.02026 6.16983 6.23556 6.28827 6.37899 6.62092 6.68012 6.79200 6.88260 6.99025 7.07279 7.11836 7.37404 7.46882 7.54942 7.76560 7.86877 7.96332 8.08843 8.42517 8.66363 8.74709 8.89170 10.01248 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.004431 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.751908 B = 6317.816294 C = 8046.177969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.011 4.011 3 C -0.219 4.219 4 C -0.196 4.196 5 C -0.023 4.023 6 C 0.151 3.849 7 N -0.585 5.585 8 C 0.578 3.422 9 O -0.554 6.554 10 C -0.273 4.273 11 C -0.097 4.097 12 C -0.159 4.159 13 C 0.129 3.871 14 C -0.452 4.452 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.789 5.789 18 Si 0.916 3.084 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.228 4.228 23 C -0.030 4.030 24 C 0.075 3.925 25 C -0.192 4.192 26 C -0.187 4.187 27 O -0.158 6.158 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.284 0.716 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 11.910 1.118 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C -0.238 4.238 4 C -0.216 4.216 5 C -0.075 4.075 6 C 0.028 3.972 7 N -0.315 5.315 8 C 0.375 3.625 9 O -0.435 6.435 10 C -0.277 4.277 11 C -0.115 4.115 12 C -0.179 4.179 13 C 0.126 3.874 14 C -0.480 4.480 15 H 0.100 0.900 16 C -0.146 4.146 17 N -0.414 5.414 18 Si 0.740 3.260 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.247 4.247 23 C -0.049 4.049 24 C -0.029 4.029 25 C -0.229 4.229 26 C -0.226 4.226 27 O -0.054 6.054 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.115 0.885 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.155 0.845 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.418 11.593 1.486 11.695 hybrid contribution -0.305 0.020 -0.626 0.697 sum 0.113 11.612 0.860 11.644 Atomic orbital electron populations 1.20301 0.85483 1.03911 1.03459 1.22513 0.94117 0.84508 1.05057 1.21464 0.92743 0.99028 1.10609 1.21470 0.97948 0.93681 1.08540 1.22893 0.83544 0.94829 1.06211 1.21109 0.90412 1.01106 0.84536 1.47240 1.55025 1.16338 1.12938 1.18770 0.76263 0.80698 0.86817 1.90493 1.56217 1.80691 1.16109 1.18933 1.13263 0.92457 1.03083 1.21371 0.96864 0.99225 0.94019 1.21050 1.03261 0.92359 1.01209 1.17829 0.87065 0.92837 0.89663 1.19766 1.33507 1.02375 0.92401 0.89959 1.26004 0.93711 0.96149 0.98738 1.69681 1.33684 1.25180 1.12841 0.86176 0.80079 0.81111 0.78644 1.19151 1.20065 1.18446 1.20814 1.04728 0.97339 1.01837 1.20291 0.96767 0.91425 0.96421 1.21532 0.99326 0.94913 0.87159 1.23817 0.95178 1.04144 0.99784 1.23168 0.99299 0.99371 1.00755 1.84124 1.16176 1.34431 1.70708 0.90110 0.90359 0.89706 0.83906 0.83899 0.83262 0.88495 0.85830 0.86089 0.90490 0.88242 0.88353 0.86146 0.84482 0.89818 0.89375 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.42 36.01 0.38 -0.43 16 2 C -0.01 -0.16 7.32 -35.63 -0.26 -0.42 16 3 C -0.22 -2.92 10.81 -39.70 -0.43 -3.35 16 4 C -0.20 -2.72 10.81 -39.70 -0.43 -3.15 16 5 C -0.02 -0.37 6.37 -35.63 -0.23 -0.60 16 6 C 0.15 2.40 5.48 -5.19 -0.03 2.37 16 7 N -0.59 -10.28 2.85 -168.66 -0.48 -10.76 16 8 C 0.58 12.27 7.25 -12.42 -0.09 12.18 16 9 O -0.55 -12.59 12.45 5.29 0.07 -12.52 16 10 C -0.27 -6.21 5.62 -104.73 -0.59 -6.80 16 11 C -0.10 -2.17 7.42 -39.61 -0.29 -2.47 16 12 C -0.16 -3.91 8.57 -39.27 -0.34 -4.25 16 13 C 0.13 3.27 5.51 -106.81 -0.59 2.68 16 14 C -0.45 -11.27 9.04 -37.75 -0.34 -11.61 16 15 H 0.08 1.97 7.86 -52.48 -0.41 1.56 16 16 C 0.07 1.71 5.30 -17.31 -0.09 1.62 16 17 N -0.79 -19.00 10.93 55.56 0.61 -18.39 16 18 Si 0.92 17.58 29.57 -169.99 -5.03 12.56 16 19 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 C -0.23 -5.45 9.73 -39.27 -0.38 -5.83 16 23 C -0.03 -0.69 9.52 -39.61 -0.38 -1.07 16 24 C 0.08 1.13 6.56 -67.94 -0.45 0.68 16 25 C -0.19 -2.93 9.62 -26.74 -0.26 -3.18 16 26 C -0.19 -2.83 9.87 -26.74 -0.26 -3.09 16 27 O -0.16 -2.79 8.77 5.71 0.05 -2.74 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.15 2.72 3.70 -56.82 -0.21 2.51 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.12 2.53 2.00 -52.49 -0.11 2.43 16 36 H 0.12 3.05 6.42 -52.49 -0.34 2.72 16 37 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 38 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 39 H 0.10 2.16 7.91 -52.49 -0.42 1.74 16 40 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.14 2.54 5.24 -52.06 -0.27 2.27 16 42 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.71 7.58 -51.92 -0.39 1.32 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -28.56 361.26 -9.90 -38.46 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -5.51 Total: 14.67 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -5.06 Total: -26.71 kcal Atomic # 7 Polarization: -29.28 SS G_CDS: 0.13 Total: -29.16 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.12 Total: -15.26 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.56 -9.90 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611146017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.200 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds