Wall clock time and date at job start Tue Mar 31 2020 14:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34509 * 125.78739 * 2 1 4 4 C 1.41387 * 106.84279 * 180.29735 * 3 2 1 5 5 C 1.34516 * 106.83728 * 359.57535 * 4 3 2 6 6 C 1.50696 * 125.79022 * 180.11534 * 5 4 3 7 7 N 1.46502 * 109.47357 * 90.34219 * 6 5 4 8 8 C 1.34780 * 120.00169 * 101.83876 * 7 6 5 9 9 O 1.21580 * 120.00115 * 187.18986 * 8 7 6 10 10 C 1.47643 * 119.99604 * 7.19480 * 8 7 6 11 11 C 1.40012 * 119.89749 * 329.33654 * 10 8 7 12 12 C 1.36316 * 120.10766 * 179.72258 * 11 10 8 13 13 C 1.40888 * 119.88930 * 0.57592 * 12 11 10 14 14 C 1.41104 * 120.10104 * 179.67831 * 13 12 11 15 15 H 1.08007 * 119.99940 * 213.57563 * 14 13 12 16 16 C 1.40227 * 120.00380 * 33.57661 * 14 13 12 17 17 N 1.30641 * 119.99708 * 6.15423 * 16 14 13 18 18 Si 1.86795 * 120.00166 * 186.15118 * 16 14 13 19 19 H 1.48501 * 109.47179 * 90.00129 * 18 16 14 20 20 H 1.48505 * 109.47279 * 210.00279 * 18 16 14 21 21 H 1.48497 * 109.47322 * 330.00011 * 18 16 14 22 22 C 1.40886 * 119.79306 * 359.69598 * 13 12 11 23 23 C 1.36316 * 119.89543 * 0.02562 * 22 13 12 24 24 C 1.46504 * 120.00000 * 281.84755 * 7 6 5 25 25 C 1.52993 * 117.49705 * 196.06071 * 24 7 6 26 26 C 1.52991 * 117.50241 * 127.43707 * 24 7 6 27 27 O 1.34304 * 125.79218 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46840 * 90.00057 * 1 2 3 29 29 H 1.09007 * 109.46811 * 209.99474 * 1 2 3 30 30 H 1.08998 * 109.47396 * 329.99610 * 1 2 3 31 31 H 1.08001 * 126.58189 * 0.03915 * 3 2 1 32 32 H 1.07994 * 126.58320 * 179.73646 * 4 3 2 33 33 H 1.08997 * 109.47517 * 210.34050 * 6 5 4 34 34 H 1.09004 * 109.47290 * 330.34598 * 6 5 4 35 35 H 1.08002 * 119.94116 * 0.02562 * 11 10 8 36 36 H 1.07998 * 120.05362 * 180.25622 * 12 11 10 37 37 H 0.97002 * 120.00242 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.04870 * 179.97438 * 22 13 12 39 39 H 1.07994 * 119.94954 * 179.97438 * 23 22 13 40 40 H 1.09003 * 115.54900 * 341.76198 * 24 7 6 41 41 H 1.09002 * 117.50473 * 359.97438 * 25 24 7 42 42 H 1.09007 * 117.49806 * 145.01884 * 25 24 7 43 43 H 1.09000 * 117.50410 * 214.97706 * 26 24 7 44 44 H 1.09009 * 117.49787 * 359.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 -0.0070 5 6 3.5814 -0.7121 -0.0014 6 6 4.7706 -1.6378 -0.0031 7 7 5.1573 -1.9387 1.3776 8 6 4.8116 -3.1172 1.9327 9 8 5.0162 -3.3158 3.1146 10 6 4.1844 -4.1670 1.1054 11 6 3.3817 -3.8099 0.0152 12 6 2.8052 -4.7757 -0.7548 13 6 3.0083 -6.1350 -0.4450 14 6 2.4082 -7.1383 -1.2350 15 1 2.0840 -8.0625 -0.7796 16 6 2.2326 -6.9356 -2.6114 17 7 2.7311 -5.8723 -3.1838 18 14 1.2861 -8.1859 -3.6264 19 1 -0.1539 -7.8231 -3.6415 20 1 1.8093 -8.1934 -5.0162 21 1 1.4503 -9.5352 -3.0285 22 6 3.8123 -6.4893 0.6564 23 6 4.3893 -5.5165 1.4173 24 6 5.9197 -0.9584 2.1550 25 6 6.6135 -1.4508 3.4265 26 6 5.3708 -0.5642 3.5275 27 8 2.2925 -1.0894 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.9665 2.1204 0.0006 32 1 4.5211 1.2434 -0.0129 33 1 4.5102 -2.5629 -0.5172 34 1 5.6036 -1.1583 -0.5173 35 1 3.2230 -2.7675 -0.2188 36 1 2.1895 -4.4993 -1.5980 37 1 2.6100 -5.7322 -4.1360 38 1 3.9704 -7.5300 0.8980 39 1 5.0053 -5.7871 2.2620 40 1 6.4230 -0.1861 1.5734 41 1 6.5025 -2.5039 3.6850 42 1 7.5737 -1.0024 3.6818 43 1 5.5133 0.4675 3.8492 44 1 4.4421 -1.0338 3.8520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611146017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:50 Heat of formation + Delta-G solvation = 53.743000 kcal Electronic energy + Delta-G solvation = -27745.982377 eV Core-core repulsion = 24017.789945 eV Total energy + Delta-G solvation = -3728.192432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.62514 -41.49678 -39.28681 -37.38715 -36.29659 -35.29695 -34.13520 -32.73736 -31.81928 -31.44604 -29.30531 -27.77777 -25.46276 -24.63116 -23.35132 -23.15860 -22.56415 -22.47244 -21.19267 -20.35792 -19.34475 -18.46398 -17.63221 -17.38874 -16.96748 -16.83063 -16.29036 -16.10107 -15.90679 -15.23975 -15.18227 -14.70075 -14.49598 -14.40729 -14.06351 -13.96003 -13.75240 -13.71993 -13.64276 -13.57258 -13.33336 -12.88238 -12.85789 -12.68426 -12.52739 -12.44532 -12.12459 -12.01033 -11.70037 -11.33944 -11.16192 -11.09274 -10.77688 -10.37817 -9.59512 -9.49809 -9.33332 -9.18964 -8.69258 -6.50583 0.40637 0.68989 1.06899 1.39245 1.41373 1.52699 1.63473 1.86253 2.03874 2.16720 2.19788 2.73331 3.01623 3.58053 3.66733 3.74258 3.92918 4.00080 4.09847 4.14336 4.16300 4.26197 4.37229 4.40508 4.56864 4.59499 4.68565 4.68873 4.81678 4.84833 4.87455 4.95474 5.01634 5.06344 5.09521 5.14480 5.26247 5.32330 5.39388 5.59558 5.68816 5.71240 5.80374 5.91653 5.99091 6.21380 6.27886 6.37683 6.55009 6.79423 6.86774 7.27082 8.26054 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.004431 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.751908 B = 6317.816294 C = 8046.177969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.031 4.031 3 C -0.219 4.219 4 C -0.179 4.179 5 C -0.058 4.058 6 C 0.151 3.849 7 N -0.579 5.579 8 C 0.572 3.428 9 O -0.576 6.576 10 C -0.282 4.282 11 C -0.086 4.086 12 C -0.180 4.180 13 C 0.103 3.897 14 C -0.485 4.485 15 H 0.082 0.918 16 C 0.035 3.965 17 N -0.815 5.815 18 Si 0.988 3.012 19 H -0.261 1.261 20 H -0.265 1.265 21 H -0.259 1.259 22 C -0.240 4.240 23 C -0.039 4.039 24 C 0.072 3.928 25 C -0.195 4.195 26 C -0.184 4.184 27 O -0.197 6.197 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.108 0.892 37 H 0.293 0.707 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.166 0.834 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 14.666 0.333 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.238 4.238 4 C -0.198 4.198 5 C -0.109 4.109 6 C 0.030 3.970 7 N -0.308 5.308 8 C 0.367 3.633 9 O -0.459 6.459 10 C -0.287 4.287 11 C -0.104 4.104 12 C -0.199 4.199 13 C 0.101 3.899 14 C -0.513 4.513 15 H 0.101 0.899 16 C -0.181 4.181 17 N -0.440 5.440 18 Si 0.809 3.191 19 H -0.185 1.185 20 H -0.190 1.190 21 H -0.182 1.182 22 C -0.260 4.260 23 C -0.058 4.058 24 C -0.031 4.031 25 C -0.233 4.233 26 C -0.223 4.223 27 O -0.095 6.095 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.191 0.809 32 H 0.192 0.808 33 H 0.137 0.863 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.183 0.817 41 H 0.118 0.882 42 H 0.136 0.864 43 H 0.141 0.859 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.867 14.385 0.699 14.428 hybrid contribution -0.411 -0.698 -0.322 0.872 sum 0.456 13.687 0.377 13.700 Atomic orbital electron populations 1.20479 0.83513 1.04734 1.04497 1.23302 0.95568 0.84317 1.04877 1.21881 0.92330 1.00071 1.09499 1.21866 0.99336 0.92780 1.05861 1.22953 0.83043 0.95811 1.09058 1.21086 0.92202 1.00326 0.83402 1.47231 1.54208 1.15573 1.13754 1.18579 0.76523 0.81829 0.86360 1.90509 1.57071 1.81566 1.16774 1.19270 1.13060 0.93124 1.03203 1.21642 0.95507 1.00146 0.93129 1.20997 1.04400 0.92733 1.01769 1.18152 0.87831 0.93519 0.90446 1.20014 1.35060 1.02600 0.93631 0.89942 1.26842 0.94029 0.98071 0.99165 1.69730 1.34070 1.26589 1.13644 0.85095 0.78612 0.78336 0.77089 1.18528 1.18963 1.18231 1.20959 1.05043 0.98014 1.01969 1.20464 0.96859 0.91863 0.96594 1.22019 0.98897 0.94826 0.87348 1.23714 0.96861 1.02388 1.00318 1.23133 0.97533 1.00741 1.00867 1.84060 1.17296 1.36426 1.71756 0.88906 0.91550 0.86826 0.80854 0.80806 0.86294 0.84465 0.83637 0.87396 0.89618 0.87435 0.87625 0.81726 0.88195 0.86389 0.85916 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.42 71.24 0.74 -0.79 16 2 C -0.03 -0.85 7.32 24.83 0.18 -0.67 16 3 C -0.22 -5.15 10.81 22.19 0.24 -4.91 16 4 C -0.18 -4.34 10.81 22.19 0.24 -4.10 16 5 C -0.06 -1.79 6.37 24.83 0.16 -1.63 16 6 C 0.15 4.64 5.48 85.63 0.47 5.11 16 7 N -0.58 -19.78 2.85 -805.77 -2.29 -22.08 16 8 C 0.57 24.80 7.25 86.73 0.63 25.43 16 9 O -0.58 -26.99 12.45 -3.97 -0.05 -27.04 16 10 C -0.28 -13.36 5.62 -19.93 -0.11 -13.47 16 11 C -0.09 -4.05 7.42 22.25 0.17 -3.89 16 12 C -0.18 -9.29 8.57 22.47 0.19 -9.10 16 13 C 0.10 5.52 5.51 -21.28 -0.12 5.40 16 14 C -0.48 -25.17 9.04 23.46 0.21 -24.96 16 15 H 0.08 4.11 7.86 -2.91 -0.02 4.09 16 16 C 0.04 1.69 5.30 85.35 0.45 2.15 16 17 N -0.82 -40.26 10.93 21.87 0.24 -40.02 16 18 Si 0.99 36.18 29.57 68.60 2.03 38.21 16 19 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 20 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 21 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 22 C -0.24 -12.10 9.73 22.47 0.22 -11.88 16 23 C -0.04 -1.88 9.52 22.25 0.21 -1.66 16 24 C 0.07 1.96 6.56 44.99 0.30 2.25 16 25 C -0.20 -5.60 9.62 30.59 0.29 -5.30 16 26 C -0.18 -5.17 9.87 30.59 0.30 -4.87 16 27 O -0.20 -6.96 8.77 -2.50 -0.02 -6.98 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 32 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.12 4.40 3.70 -6.98 -0.03 4.37 16 34 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.15 6.18 2.00 -2.91 -0.01 6.17 16 36 H 0.11 5.77 6.42 -2.91 -0.02 5.75 16 37 H 0.29 12.96 8.29 -92.71 -0.77 12.19 16 38 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 39 H 0.11 4.85 7.91 -2.91 -0.02 4.83 16 40 H 0.17 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.10 3.73 5.24 -4.46 -0.02 3.71 16 42 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 43 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.06 2.06 7.58 -2.38 -0.02 2.04 16 Total: -1.00 -66.31 361.26 5.68 -60.63 By element: Atomic # 1 Polarization: 43.18 SS G_CDS: 1.01 Total: 44.19 kcal Atomic # 6 Polarization: -51.68 SS G_CDS: 4.77 Total: -46.91 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -2.05 Total: -62.09 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.07 Total: -34.03 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Total: -66.31 5.68 -60.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611146017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.371 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds