Wall clock time and date at job start Tue Mar 31 2020 14:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47184 * 2 1 4 4 C 1.38235 * 119.99840 * 263.58758 * 3 2 1 5 5 C 1.38243 * 119.99692 * 180.24850 * 4 3 2 6 6 C 1.38235 * 119.99784 * 359.76713 * 5 4 3 7 7 C 1.38234 * 120.00433 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00484 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.46911 * 270.03108 * 8 7 6 10 10 C 1.38238 * 119.99903 * 359.95430 * 7 6 5 11 11 S 1.76199 * 120.00461 * 180.02562 * 10 7 6 12 12 O 1.42109 * 106.39922 * 310.70453 * 11 10 7 13 13 O 1.42098 * 106.40659 * 177.78542 * 11 10 7 14 14 N 1.65597 * 107.21581 * 64.24131 * 11 10 7 15 15 C 1.46497 * 119.99930 * 58.38594 * 14 11 10 16 16 H 1.08999 * 109.47431 * 351.57183 * 15 14 11 17 17 C 1.50707 * 109.47161 * 231.57138 * 15 14 11 18 18 H 1.07994 * 119.99664 * 355.07178 * 17 15 14 19 19 C 1.37874 * 119.99796 * 175.06265 * 17 15 14 20 20 N 1.31515 * 119.99712 * 179.87056 * 19 17 15 21 21 Si 1.86794 * 120.00310 * 359.87787 * 19 17 15 22 22 H 1.48495 * 109.47165 * 86.59608 * 21 19 17 23 23 H 1.48500 * 109.47189 * 206.59453 * 21 19 17 24 24 H 1.48500 * 109.47201 * 326.59589 * 21 19 17 25 25 C 1.53007 * 109.47476 * 111.57221 * 15 14 11 26 26 C 1.53002 * 109.46955 * 296.62141 * 25 15 14 27 27 H 1.08993 * 109.46942 * 299.95547 * 1 2 3 28 28 H 1.08993 * 109.46857 * 59.95595 * 1 2 3 29 29 H 1.08999 * 109.46946 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47020 * 239.99985 * 2 1 3 31 31 H 1.08995 * 109.47386 * 120.00347 * 2 1 3 32 32 H 1.07997 * 120.00243 * 0.03415 * 4 3 2 33 33 H 1.07993 * 119.99609 * 179.79093 * 5 4 3 34 34 H 1.08004 * 119.99667 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47043 * 30.02877 * 8 7 6 36 36 H 1.08993 * 109.47247 * 150.02586 * 8 7 6 37 37 H 1.08990 * 109.47282 * 66.84062 * 9 8 7 38 38 H 1.09006 * 109.46677 * 186.84342 * 9 8 7 39 39 H 1.09000 * 109.46850 * 306.83739 * 9 8 7 40 40 H 0.96998 * 120.00168 * 238.37704 * 14 11 10 41 41 H 0.96998 * 120.00254 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.46972 * 56.62247 * 25 15 14 43 43 H 1.08992 * 109.47142 * 176.62209 * 25 15 14 44 44 H 1.09005 * 109.46802 * 65.14703 * 26 25 15 45 45 H 1.08994 * 109.46952 * 185.14484 * 26 25 15 46 46 H 1.08998 * 109.46750 * 305.14611 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3888 2.0279 -1.1897 5 6 2.8545 3.3295 -1.1891 6 6 2.9591 4.0255 0.0007 7 6 2.5986 3.4199 1.1898 8 6 2.7132 4.1785 2.4869 9 6 4.1018 3.9529 3.0886 10 6 2.1326 2.1185 1.1892 11 16 1.6724 1.3466 2.7048 12 8 2.7463 1.5663 3.6092 13 8 1.1934 0.0522 2.3668 14 7 0.3758 2.1826 3.3067 15 6 -0.8484 2.3070 2.5118 16 1 -0.6705 1.9218 1.5078 17 6 -1.2489 3.7576 2.4297 18 1 -0.6980 4.5020 2.9852 19 6 -2.3183 4.1341 1.6452 20 7 -2.6694 5.3996 1.5755 21 14 -3.2688 2.8468 0.6815 22 1 -4.3308 2.2678 1.5428 23 1 -3.8884 3.4788 -0.5110 24 1 -2.3428 1.7706 0.2463 25 6 -1.9705 1.5049 3.1743 26 6 -1.6003 0.0204 3.1817 27 1 -0.3633 0.5131 0.8903 28 1 -0.3633 0.5145 -0.8895 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.3068 1.4841 -2.1192 33 1 3.1362 3.8026 -2.1181 34 1 3.3234 5.0423 0.0012 35 1 2.5668 5.2423 2.2998 36 1 1.9534 3.8242 3.1834 37 1 4.8541 4.4153 2.4498 38 1 4.1442 4.3998 4.0820 39 1 4.2961 2.8830 3.1630 40 1 0.4269 2.5898 4.1856 41 1 -3.4220 5.6646 1.0240 42 1 -2.1078 1.8503 4.1990 43 1 -2.8961 1.6458 2.6163 44 1 -0.7265 -0.1330 3.8150 45 1 -2.4368 -0.5607 3.5698 46 1 -1.3739 -0.3026 2.1656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613013107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:19 Heat of formation + Delta-G solvation = -46.325631 kcal Electronic energy + Delta-G solvation = -28594.107178 eV Core-core repulsion = 24997.019396 eV Total energy + Delta-G solvation = -3597.087782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.47823 -37.33852 -36.30523 -35.51295 -34.36086 -32.99332 -32.27360 -30.98946 -29.73985 -28.75844 -27.23794 -23.93782 -23.88631 -22.67789 -21.98214 -20.57642 -20.01949 -19.16026 -17.63642 -16.96479 -16.44421 -15.92250 -15.61193 -15.44940 -14.64002 -14.38376 -14.08025 -13.86321 -13.59779 -13.34095 -13.26176 -12.99795 -12.79984 -12.61331 -12.27241 -12.21766 -11.97160 -11.90972 -11.81100 -11.62413 -11.40355 -11.25135 -11.14834 -10.94997 -10.92321 -10.68731 -10.61178 -10.40471 -10.37926 -9.87847 -9.68801 -9.60034 -9.36020 -8.99623 -8.73369 -8.39879 -8.37001 -6.21184 -4.22194 0.91880 1.18984 1.57028 3.18536 3.29161 3.30170 3.50735 3.74985 4.21550 4.28030 4.75470 4.86464 5.00960 5.03434 5.08064 5.36961 5.45135 5.53663 5.54297 5.66465 5.80080 5.84017 5.89302 5.92178 5.92776 6.01666 6.09634 6.12457 6.24114 6.25363 6.29874 6.30970 6.44896 6.51414 6.56832 6.62666 6.67322 6.72943 6.76625 6.80072 6.85106 7.06659 7.13492 7.29712 7.43536 7.81491 8.36699 8.82102 9.39070 10.91186 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011511 B = 0.007224 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.796243 B = 3875.281549 C = 4081.849031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.025 3.975 4 C -0.155 4.155 5 C -0.062 4.062 6 C -0.148 4.148 7 C 0.044 3.956 8 C -0.111 4.111 9 C -0.150 4.150 10 C -0.666 4.666 11 S 2.683 3.317 12 O -0.974 6.974 13 O -0.956 6.956 14 N -1.094 6.094 15 C 0.245 3.755 16 H 0.052 0.948 17 C -0.526 4.526 18 H 0.083 0.917 19 C 0.079 3.921 20 N -0.892 5.892 21 Si 0.864 3.136 22 H -0.272 1.272 23 H -0.293 1.293 24 H -0.256 1.256 25 C -0.142 4.142 26 C -0.159 4.159 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.412 0.588 41 H 0.266 0.734 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.038 0.962 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.561 -6.386 -2.503 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.023 3.977 4 C -0.173 4.173 5 C -0.080 4.080 6 C -0.167 4.167 7 C 0.043 3.957 8 C -0.148 4.148 9 C -0.207 4.207 10 C -0.753 4.753 11 S 2.775 3.225 12 O -0.964 6.964 13 O -0.946 6.946 14 N -0.855 5.855 15 C 0.140 3.860 16 H 0.069 0.931 17 C -0.565 4.565 18 H 0.101 0.899 19 C -0.125 4.125 20 N -0.529 5.529 21 Si 0.693 3.307 22 H -0.198 1.198 23 H -0.219 1.219 24 H -0.181 1.181 25 C -0.181 4.181 26 C -0.216 4.216 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.246 0.754 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.819 -7.058 -2.381 12.325 hybrid contribution -0.871 0.459 -1.054 1.442 sum 8.948 -6.599 -3.435 11.637 Atomic orbital electron populations 1.22023 0.93716 1.02167 1.02611 1.21439 0.97867 0.91714 1.05111 1.19679 0.90864 0.95547 0.91585 1.21062 1.03026 0.95766 0.97486 1.21316 0.94664 0.94103 0.97889 1.21050 1.03281 1.00252 0.92138 1.19463 0.89328 0.91042 0.95871 1.20942 0.99488 1.00996 0.93384 1.21881 0.94515 1.04330 0.99970 1.30435 1.18539 1.06629 1.19729 1.02006 0.72969 0.74149 0.73389 1.93532 1.53864 1.86314 1.62703 1.93520 1.80525 1.37057 1.83487 1.55281 1.28074 1.73529 1.28573 1.19130 0.80336 0.96974 0.89585 0.93058 1.21191 1.15178 0.90686 1.29415 0.89890 1.24857 0.96667 0.95060 0.95922 1.69863 1.27802 1.15504 1.39702 0.87193 0.81308 0.82422 0.79776 1.19831 1.21946 1.18065 1.22287 0.99590 0.94222 1.02030 1.22009 1.00305 0.96841 1.02466 0.90205 0.93787 0.92211 0.91687 0.85784 0.85767 0.85804 0.85586 0.89680 0.90014 0.93427 0.92169 0.89895 0.75389 0.92438 0.91722 0.92353 0.92698 0.94309 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.74 37.16 0.32 -2.19 16 2 C -0.12 -1.93 5.30 -27.88 -0.15 -2.08 16 3 C 0.02 0.42 5.13 -104.62 -0.54 -0.12 16 4 C -0.15 -2.30 9.68 -39.58 -0.38 -2.68 16 5 C -0.06 -0.87 10.05 -39.58 -0.40 -1.27 16 6 C -0.15 -2.28 9.70 -39.58 -0.38 -2.67 16 7 C 0.04 0.76 5.12 -104.62 -0.54 0.23 16 8 C -0.11 -1.80 5.31 -27.88 -0.15 -1.95 16 9 C -0.15 -2.18 9.37 37.16 0.35 -1.83 16 10 C -0.67 -11.92 5.54 -39.58 -0.22 -12.14 16 11 S 2.68 47.97 4.57 -107.50 -0.49 47.48 16 12 O -0.97 -17.99 14.07 -57.17 -0.80 -18.80 16 13 O -0.96 -17.29 9.17 -57.17 -0.52 -17.82 16 14 N -1.09 -20.34 3.54 -5.88 -0.02 -20.36 16 15 C 0.25 5.26 1.65 -69.08 -0.11 5.14 16 16 H 0.05 1.14 3.48 -51.93 -0.18 0.96 16 17 C -0.53 -13.34 9.36 -34.44 -0.32 -13.66 16 18 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 19 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 20 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 21 Si 0.86 20.41 24.74 -169.99 -4.21 16.20 16 22 H -0.27 -6.24 6.70 56.52 0.38 -5.87 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.26 -5.70 6.48 56.52 0.37 -5.34 16 25 C -0.14 -2.88 5.20 -26.73 -0.14 -3.02 16 26 C -0.16 -2.86 8.57 37.16 0.32 -2.54 16 27 H 0.08 1.50 1.47 -51.93 -0.08 1.43 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.84 8.04 -51.93 -0.42 0.42 16 31 H 0.12 1.98 5.16 -53.21 -0.27 1.71 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 36 H 0.08 1.40 5.17 -51.93 -0.27 1.14 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.33 5.91 -51.93 -0.31 1.02 16 40 H 0.41 6.93 8.76 -34.47 -0.30 6.63 16 41 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.25 3.83 -51.93 -0.20 1.06 16 44 H 0.05 0.95 6.94 -51.93 -0.36 0.59 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 1.10 5.55 -51.93 -0.29 0.81 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -29.56 346.29 -9.00 -38.56 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -6.52 Total: 13.13 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: -2.43 Total: -38.76 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.75 Total: -45.22 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.33 Total: -36.61 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.21 Total: 16.20 kcal Atomic # 16 Polarization: 47.97 SS G_CDS: -0.49 Total: 47.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.56 -9.00 -38.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613013107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.763 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds