Wall clock time and date at job start Tue Mar 31 2020 14:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47219 * 2 1 4 4 C 1.38244 * 120.00130 * 256.41140 * 3 2 1 5 5 C 1.38236 * 120.00113 * 180.24991 * 4 3 2 6 6 C 1.38228 * 119.99577 * 359.76598 * 5 4 3 7 7 C 1.38235 * 120.00626 * 0.02571 * 6 5 4 8 8 C 1.50694 * 120.00072 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47191 * 266.26402 * 8 7 6 10 10 C 1.38229 * 120.00245 * 76.20118 * 3 2 1 11 11 S 1.76206 * 119.99782 * 359.97438 * 10 3 2 12 12 O 1.42100 * 106.39815 * 161.70358 * 11 10 3 13 13 O 1.42100 * 106.39875 * 28.78299 * 11 10 3 14 14 N 1.65597 * 107.21972 * 275.23948 * 11 10 3 15 15 C 1.46498 * 120.00191 * 297.73187 * 14 11 10 16 16 H 1.08994 * 109.47391 * 4.88820 * 15 14 11 17 17 C 1.50695 * 109.47642 * 124.89713 * 15 14 11 18 18 H 1.08004 * 119.99784 * 359.97438 * 17 15 14 19 19 C 1.37878 * 120.00411 * 180.02562 * 17 15 14 20 20 N 1.31517 * 119.99731 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 120.00331 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47238 * 89.99717 * 21 19 17 23 23 H 1.48502 * 109.47263 * 209.99866 * 21 19 17 24 24 H 1.48500 * 109.47181 * 329.99621 * 21 19 17 25 25 C 1.53011 * 109.46845 * 244.89392 * 15 14 11 26 26 C 1.52999 * 109.47185 * 65.66770 * 25 15 14 27 27 H 1.09000 * 109.47007 * 185.81014 * 1 2 3 28 28 H 1.09004 * 109.46732 * 305.80115 * 1 2 3 29 29 H 1.09000 * 109.47419 * 65.80389 * 1 2 3 30 30 H 1.09004 * 109.46928 * 239.99736 * 2 1 3 31 31 H 1.08995 * 109.47352 * 120.00441 * 2 1 3 32 32 H 1.08002 * 119.99536 * 0.04020 * 4 3 2 33 33 H 1.07997 * 119.99849 * 179.79477 * 5 4 3 34 34 H 1.08007 * 119.99635 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.47386 * 26.26675 * 8 7 6 36 36 H 1.09005 * 109.47129 * 146.26967 * 8 7 6 37 37 H 1.09004 * 109.46596 * 60.00812 * 9 8 7 38 38 H 1.09007 * 109.47126 * 179.97438 * 9 8 7 39 39 H 1.08993 * 109.47608 * 300.00549 * 9 8 7 40 40 H 0.96997 * 119.99718 * 117.72385 * 14 11 10 41 41 H 0.96995 * 120.00103 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.46842 * 185.66708 * 25 15 14 43 43 H 1.08997 * 109.46704 * 305.66704 * 25 15 14 44 44 H 1.08996 * 109.47242 * 181.78766 * 26 25 15 45 45 H 1.09007 * 109.46692 * 301.78639 * 26 25 15 46 46 H 1.08998 * 109.47273 * 61.77896 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.5280 1.9787 -1.1637 5 6 2.9936 3.2803 -1.1625 6 6 2.9591 4.0255 0.0012 7 6 2.4595 3.4691 1.1639 8 6 2.4225 4.2814 2.4326 9 6 3.6889 4.0120 3.2478 10 6 1.9936 2.1676 1.1625 11 16 1.3561 1.4585 2.6443 12 8 1.8311 2.2665 3.7123 13 8 1.6010 0.0614 2.5582 14 7 -0.2886 1.6480 2.6104 15 6 -0.8709 2.9922 2.5904 16 1 -0.0742 3.7321 2.5141 17 6 -1.7930 3.1228 1.4058 18 1 -1.9313 2.2881 0.7345 19 6 -2.4595 4.3081 1.1782 20 7 -2.2907 5.3247 1.9953 21 14 -3.6020 4.4702 -0.2907 22 1 -4.9746 4.0618 0.1023 23 1 -3.6184 5.8818 -0.7517 24 1 -3.1213 3.5959 -1.3906 25 6 -1.6611 3.2248 3.8799 26 6 -0.7017 3.2326 5.0716 27 1 -0.3633 -1.0224 0.1040 28 1 -0.3633 0.6012 0.8335 29 1 -0.3634 0.4212 -0.9374 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.5545 1.3965 -2.0730 33 1 3.3838 3.7150 -2.0708 34 1 3.3232 5.0423 0.0023 35 1 2.3690 5.3413 2.1840 36 1 1.5470 4.0008 3.0182 37 1 4.5644 4.2926 2.6622 38 1 3.6623 4.5999 4.1654 39 1 3.7425 2.9521 3.4964 40 1 -0.8665 0.8690 2.6036 41 1 -2.7598 6.1585 1.8355 42 1 -2.1765 4.1835 3.8221 43 1 -2.3920 2.4263 4.0070 44 1 -1.2681 3.3666 5.9932 45 1 -0.1630 2.2857 5.1106 46 1 0.0097 4.0509 4.9601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613013118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:23 Heat of formation + Delta-G solvation = -51.571747 kcal Electronic energy + Delta-G solvation = -28449.183581 eV Core-core repulsion = 24851.868310 eV Total energy + Delta-G solvation = -3597.315271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.40597 -37.29785 -36.01671 -35.38563 -34.20995 -32.95823 -32.23347 -30.56199 -29.63108 -28.70795 -26.64866 -23.87766 -23.72944 -23.01576 -21.91602 -20.10869 -19.95804 -18.93632 -17.56982 -16.80219 -16.37503 -15.83019 -15.38847 -15.21393 -14.58928 -14.27308 -13.87856 -13.83998 -13.32108 -13.28846 -12.99993 -12.94741 -12.83731 -12.59602 -11.94523 -11.88028 -11.80315 -11.66860 -11.65381 -11.45497 -11.35897 -11.22697 -11.12588 -10.96077 -10.80622 -10.61166 -10.33423 -10.24626 -10.06237 -9.88210 -9.69545 -9.67652 -9.36748 -8.90900 -8.50512 -8.30494 -8.18249 -6.13718 -4.21243 1.01226 1.27812 1.63588 3.22292 3.29990 3.32428 3.63144 3.86260 4.33816 4.34929 4.80262 4.94292 5.05843 5.11986 5.16600 5.44344 5.53708 5.62115 5.64676 5.71387 5.87357 5.93579 5.96145 6.13999 6.17517 6.23965 6.28354 6.34194 6.34940 6.38172 6.44178 6.54351 6.59619 6.64581 6.70909 6.78179 6.81286 6.86773 6.99180 7.12103 7.20579 7.24626 7.62242 7.66860 7.85219 8.00509 8.25587 8.81836 9.45080 10.90731 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.007134 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.190688 B = 3923.733048 C = 4454.055917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.142 4.142 3 C 0.033 3.967 4 C -0.157 4.157 5 C -0.063 4.063 6 C -0.152 4.152 7 C 0.041 3.959 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.665 4.665 11 S 2.684 3.316 12 O -0.954 6.954 13 O -0.981 6.981 14 N -1.100 6.100 15 C 0.276 3.724 16 H 0.052 0.948 17 C -0.526 4.526 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.885 5.885 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.130 4.130 26 C -0.147 4.147 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.407 0.593 41 H 0.264 0.736 42 H 0.103 0.897 43 H 0.037 0.963 44 H 0.031 0.969 45 H 0.041 0.959 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -4.426 -2.431 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.179 4.179 3 C 0.031 3.969 4 C -0.176 4.176 5 C -0.081 4.081 6 C -0.171 4.171 7 C 0.039 3.961 8 C -0.156 4.156 9 C -0.187 4.187 10 C -0.752 4.752 11 S 2.776 3.224 12 O -0.944 6.944 13 O -0.972 6.972 14 N -0.861 5.861 15 C 0.173 3.827 16 H 0.070 0.930 17 C -0.565 4.565 18 H 0.082 0.918 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.170 4.170 26 C -0.205 4.205 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.242 0.758 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.924 -4.447 -1.727 10.119 hybrid contribution -1.025 0.415 -1.913 2.210 sum 7.899 -4.032 -3.640 9.587 Atomic orbital electron populations 1.22053 0.93752 1.02409 1.03801 1.21543 0.97595 0.92487 1.06310 1.19550 0.90826 0.94981 0.91514 1.21043 1.02855 0.95992 0.97660 1.21291 0.95243 0.93937 0.97634 1.21073 1.03054 1.00208 0.92751 1.19644 0.89410 0.91212 0.95820 1.21278 1.02471 0.98919 0.92948 1.21663 0.94875 1.03289 0.98853 1.30468 1.19118 1.05462 1.20127 1.01940 0.73345 0.72822 0.74314 1.93593 1.79640 1.69156 1.52011 1.93376 1.85286 1.31467 1.87032 1.55659 1.23341 1.16514 1.90575 1.18695 0.93824 0.76146 0.94078 0.93032 1.21429 1.26411 0.98810 1.09858 0.91760 1.24871 0.96568 0.95699 0.96438 1.69849 1.42614 1.03255 1.36636 0.86592 0.81152 0.77344 0.82932 1.20600 1.21211 1.19915 1.21942 0.97896 1.03625 0.93516 1.21844 0.99517 1.01045 0.98048 0.92100 0.90577 0.92635 0.91065 0.85086 0.85925 0.85976 0.85741 0.91016 0.86789 0.94367 0.92275 0.91271 0.75777 0.92641 0.87895 0.94372 0.95001 0.93994 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.53 37.16 0.35 -2.24 16 2 C -0.14 -2.22 5.35 -27.88 -0.15 -2.37 16 3 C 0.03 0.56 5.15 -104.63 -0.54 0.02 16 4 C -0.16 -2.38 9.67 -39.58 -0.38 -2.76 16 5 C -0.06 -0.91 10.05 -39.59 -0.40 -1.31 16 6 C -0.15 -2.41 9.69 -39.59 -0.38 -2.79 16 7 C 0.04 0.73 5.11 -104.63 -0.53 0.19 16 8 C -0.12 -2.11 5.02 -27.88 -0.14 -2.25 16 9 C -0.13 -2.03 9.13 37.16 0.34 -1.70 16 10 C -0.66 -12.27 5.82 -39.59 -0.23 -12.50 16 11 S 2.68 50.16 4.54 -107.50 -0.49 49.67 16 12 O -0.95 -18.55 9.81 -57.17 -0.56 -19.11 16 13 O -0.98 -18.65 13.95 -57.17 -0.80 -19.45 16 14 N -1.10 -21.20 3.05 -5.88 -0.02 -21.22 16 15 C 0.28 6.18 2.23 -69.08 -0.15 6.03 16 16 H 0.05 1.23 5.20 -51.93 -0.27 0.96 16 17 C -0.53 -12.95 8.84 -34.44 -0.30 -13.26 16 18 H 0.06 1.56 7.46 -52.48 -0.39 1.17 16 19 C 0.07 1.71 5.29 -17.82 -0.09 1.61 16 20 N -0.89 -23.18 11.29 55.43 0.63 -22.56 16 21 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C -0.13 -2.86 5.45 -26.73 -0.15 -3.01 16 26 C -0.15 -2.92 9.23 37.16 0.34 -2.58 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.32 3.71 -51.93 -0.19 1.13 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.93 7.97 -51.93 -0.41 0.51 16 31 H 0.13 2.18 4.95 -52.05 -0.26 1.93 16 32 H 0.12 1.52 8.01 -52.49 -0.42 1.10 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 35 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 36 H 0.11 2.26 3.34 -51.93 -0.17 2.08 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.07 1.15 6.25 -51.93 -0.32 0.82 16 40 H 0.41 7.15 8.03 -34.46 -0.28 6.87 16 41 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 42 H 0.10 2.53 5.94 -51.93 -0.31 2.22 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.04 0.80 6.71 -51.92 -0.35 0.45 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -27.78 356.08 -10.05 -37.82 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -6.74 Total: 13.21 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: -2.42 Total: -38.90 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.61 Total: -43.77 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.36 Total: -38.56 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 50.16 SS G_CDS: -0.49 Total: 49.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.78 -10.05 -37.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613013118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.747 kcal (2) G-P(sol) polarization free energy of solvation -27.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds