Wall clock time and date at job start Tue Mar 31 2020 14:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47219 * 2 1 4 4 C 1.38244 * 120.00130 * 256.41140 * 3 2 1 5 5 C 1.38236 * 120.00113 * 180.24991 * 4 3 2 6 6 C 1.38228 * 119.99577 * 359.76598 * 5 4 3 7 7 C 1.38235 * 120.00626 * 0.02571 * 6 5 4 8 8 C 1.50694 * 120.00072 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47191 * 266.26402 * 8 7 6 10 10 C 1.38229 * 120.00245 * 76.20118 * 3 2 1 11 11 S 1.76206 * 119.99782 * 359.97438 * 10 3 2 12 12 O 1.42100 * 106.39815 * 161.70358 * 11 10 3 13 13 O 1.42100 * 106.39875 * 28.78299 * 11 10 3 14 14 N 1.65597 * 107.21972 * 275.23948 * 11 10 3 15 15 C 1.46498 * 120.00191 * 297.73187 * 14 11 10 16 16 H 1.08994 * 109.47391 * 4.88820 * 15 14 11 17 17 C 1.50695 * 109.47642 * 124.89713 * 15 14 11 18 18 H 1.08004 * 119.99784 * 359.97438 * 17 15 14 19 19 C 1.37878 * 120.00411 * 180.02562 * 17 15 14 20 20 N 1.31517 * 119.99731 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 120.00331 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47238 * 89.99717 * 21 19 17 23 23 H 1.48502 * 109.47263 * 209.99866 * 21 19 17 24 24 H 1.48500 * 109.47181 * 329.99621 * 21 19 17 25 25 C 1.53011 * 109.46845 * 244.89392 * 15 14 11 26 26 C 1.52999 * 109.47185 * 65.66770 * 25 15 14 27 27 H 1.09000 * 109.47007 * 185.81014 * 1 2 3 28 28 H 1.09004 * 109.46732 * 305.80115 * 1 2 3 29 29 H 1.09000 * 109.47419 * 65.80389 * 1 2 3 30 30 H 1.09004 * 109.46928 * 239.99736 * 2 1 3 31 31 H 1.08995 * 109.47352 * 120.00441 * 2 1 3 32 32 H 1.08002 * 119.99536 * 0.04020 * 4 3 2 33 33 H 1.07997 * 119.99849 * 179.79477 * 5 4 3 34 34 H 1.08007 * 119.99635 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.47386 * 26.26675 * 8 7 6 36 36 H 1.09005 * 109.47129 * 146.26967 * 8 7 6 37 37 H 1.09004 * 109.46596 * 60.00812 * 9 8 7 38 38 H 1.09007 * 109.47126 * 179.97438 * 9 8 7 39 39 H 1.08993 * 109.47608 * 300.00549 * 9 8 7 40 40 H 0.96997 * 119.99718 * 117.72385 * 14 11 10 41 41 H 0.96995 * 120.00103 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.46842 * 185.66708 * 25 15 14 43 43 H 1.08997 * 109.46704 * 305.66704 * 25 15 14 44 44 H 1.08996 * 109.47242 * 181.78766 * 26 25 15 45 45 H 1.09007 * 109.46692 * 301.78639 * 26 25 15 46 46 H 1.08998 * 109.47273 * 61.77896 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.5280 1.9787 -1.1637 5 6 2.9936 3.2803 -1.1625 6 6 2.9591 4.0255 0.0012 7 6 2.4595 3.4691 1.1639 8 6 2.4225 4.2814 2.4326 9 6 3.6889 4.0120 3.2478 10 6 1.9936 2.1676 1.1625 11 16 1.3561 1.4585 2.6443 12 8 1.8311 2.2665 3.7123 13 8 1.6010 0.0614 2.5582 14 7 -0.2886 1.6480 2.6104 15 6 -0.8709 2.9922 2.5904 16 1 -0.0742 3.7321 2.5141 17 6 -1.7930 3.1228 1.4058 18 1 -1.9313 2.2881 0.7345 19 6 -2.4595 4.3081 1.1782 20 7 -2.2907 5.3247 1.9953 21 14 -3.6020 4.4702 -0.2907 22 1 -4.9746 4.0618 0.1023 23 1 -3.6184 5.8818 -0.7517 24 1 -3.1213 3.5959 -1.3906 25 6 -1.6611 3.2248 3.8799 26 6 -0.7017 3.2326 5.0716 27 1 -0.3633 -1.0224 0.1040 28 1 -0.3633 0.6012 0.8335 29 1 -0.3634 0.4212 -0.9374 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.5545 1.3965 -2.0730 33 1 3.3838 3.7150 -2.0708 34 1 3.3232 5.0423 0.0023 35 1 2.3690 5.3413 2.1840 36 1 1.5470 4.0008 3.0182 37 1 4.5644 4.2926 2.6622 38 1 3.6623 4.5999 4.1654 39 1 3.7425 2.9521 3.4964 40 1 -0.8665 0.8690 2.6036 41 1 -2.7598 6.1585 1.8355 42 1 -2.1765 4.1835 3.8221 43 1 -2.3920 2.4263 4.0070 44 1 -1.2681 3.3666 5.9932 45 1 -0.1630 2.2857 5.1106 46 1 0.0097 4.0509 4.9601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613013118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:22 Heat of formation + Delta-G solvation = -65.796289 kcal Electronic energy + Delta-G solvation = -28449.800403 eV Core-core repulsion = 24851.868310 eV Total energy + Delta-G solvation = -3597.932093 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62596 -38.75816 -37.70646 -36.86965 -35.50549 -34.24110 -34.03537 -32.21527 -30.88370 -29.92595 -28.48361 -25.15421 -24.95920 -24.78686 -23.18765 -21.82545 -21.22013 -20.39816 -19.15079 -18.25076 -17.98922 -17.25442 -16.89026 -16.57237 -16.20908 -15.56616 -15.43437 -15.11930 -14.89313 -14.77160 -14.43724 -14.37003 -14.15816 -13.85047 -13.48003 -13.45801 -13.17873 -13.10337 -13.03614 -12.97899 -12.84031 -12.71096 -12.65586 -12.45466 -12.36294 -12.11707 -11.80414 -11.77824 -11.61350 -11.47039 -11.34331 -11.08634 -10.97615 -10.40583 -10.17247 -9.84663 -9.53313 -8.06294 -6.18152 -0.38555 -0.01527 0.40974 1.42367 1.45769 1.52661 2.20761 2.46705 2.56477 2.93893 3.21927 3.49121 3.71875 3.79711 3.96670 4.29171 4.32729 4.38587 4.45108 4.50115 4.54506 4.59984 4.66753 4.71365 4.73179 4.74260 4.93762 4.96727 4.98418 5.08623 5.13927 5.17861 5.20854 5.29413 5.39149 5.43019 5.46586 5.52498 5.52858 5.55811 5.59787 5.74327 5.89480 6.02065 6.12990 6.22104 6.48487 6.90797 7.49960 8.96978 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.007134 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.190688 B = 3923.733048 C = 4454.055917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C 0.014 3.986 4 C -0.160 4.160 5 C -0.057 4.057 6 C -0.163 4.163 7 C 0.018 3.982 8 C -0.122 4.122 9 C -0.126 4.126 10 C -0.685 4.685 11 S 2.692 3.308 12 O -0.967 6.967 13 O -0.987 6.987 14 N -1.098 6.098 15 C 0.284 3.716 16 H 0.038 0.962 17 C -0.531 4.531 18 H 0.063 0.937 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.942 3.058 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.272 1.272 25 C -0.128 4.128 26 C -0.139 4.139 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.146 0.854 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.413 0.587 41 H 0.262 0.738 42 H 0.078 0.922 43 H 0.040 0.960 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.167 -4.831 -4.279 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.179 4.179 3 C 0.013 3.987 4 C -0.178 4.178 5 C -0.075 4.075 6 C -0.181 4.181 7 C 0.017 3.983 8 C -0.159 4.159 9 C -0.184 4.184 10 C -0.774 4.774 11 S 2.785 3.215 12 O -0.956 6.956 13 O -0.978 6.978 14 N -0.859 5.859 15 C 0.179 3.821 16 H 0.055 0.945 17 C -0.571 4.571 18 H 0.081 0.919 19 C -0.175 4.175 20 N -0.548 5.548 21 Si 0.769 3.231 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.197 1.197 25 C -0.168 4.168 26 C -0.197 4.197 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.172 0.828 33 H 0.179 0.821 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.249 0.751 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.703 -4.882 -3.551 11.427 hybrid contribution -1.219 0.524 -1.380 1.915 sum 8.483 -4.357 -4.931 10.736 Atomic orbital electron populations 1.22089 0.94221 1.03192 1.02960 1.21541 0.97193 0.92032 1.07090 1.19866 0.91380 0.95615 0.91855 1.21479 1.01687 0.96649 0.98022 1.21773 0.93717 0.93528 0.98483 1.21424 1.02736 1.01416 0.92542 1.19807 0.90595 0.91301 0.96627 1.21253 1.02231 0.99216 0.93236 1.21640 0.94925 1.02573 0.99240 1.30330 1.20586 1.06216 1.20257 1.01583 0.72844 0.72574 0.74449 1.93577 1.79616 1.69327 1.53129 1.93377 1.85183 1.31862 1.87352 1.55503 1.23922 1.15593 1.90863 1.18408 0.93055 0.77193 0.93466 0.94453 1.21715 1.26330 0.98621 1.10407 0.91864 1.25477 0.97906 0.95708 0.98414 1.69964 1.43481 1.03510 1.37821 0.85797 0.79687 0.77006 0.80581 1.20368 1.21369 1.19666 1.21838 0.98219 1.02275 0.94467 1.21749 0.99029 1.00914 0.97969 0.90324 0.92412 0.92641 0.88181 0.86375 0.82834 0.82087 0.83674 0.90527 0.89287 0.92258 0.91713 0.92531 0.75115 0.92845 0.90390 0.94080 0.93108 0.93535 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.11 9.53 71.98 0.69 -4.43 16 2 C -0.14 -4.18 5.35 29.85 0.16 -4.02 16 3 C 0.01 0.47 5.15 -19.87 -0.10 0.37 16 4 C -0.16 -4.35 9.67 22.27 0.22 -4.14 16 5 C -0.06 -1.46 10.05 22.27 0.22 -1.24 16 6 C -0.16 -4.82 9.69 22.27 0.22 -4.60 16 7 C 0.02 0.64 5.11 -19.87 -0.10 0.54 16 8 C -0.12 -4.35 5.02 29.85 0.15 -4.20 16 9 C -0.13 -3.94 9.13 71.98 0.66 -3.29 16 10 C -0.68 -25.01 5.82 22.27 0.13 -24.88 16 11 S 2.69 101.62 4.54 -56.49 -0.26 101.36 16 12 O -0.97 -38.37 9.81 -128.00 -1.26 -39.62 16 13 O -0.99 -37.63 13.95 -128.00 -1.79 -39.41 16 14 N -1.10 -42.89 3.05 -172.52 -0.53 -43.42 16 15 C 0.28 12.91 2.23 44.25 0.10 13.01 16 16 H 0.04 1.85 5.20 -2.39 -0.01 1.83 16 17 C -0.53 -26.35 8.84 25.60 0.23 -26.12 16 18 H 0.06 3.08 7.46 -2.91 -0.02 3.06 16 19 C 0.03 1.28 5.29 84.65 0.45 1.73 16 20 N -0.91 -48.29 11.29 21.45 0.24 -48.05 16 21 Si 0.94 41.23 29.54 68.60 2.03 43.25 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 C -0.13 -5.74 5.45 30.60 0.17 -5.57 16 26 C -0.14 -5.56 9.23 71.98 0.66 -4.90 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 1.98 3.71 -2.38 -0.01 1.97 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.10 2.32 7.97 -2.38 -0.02 2.30 16 31 H 0.12 3.83 4.95 -4.21 -0.02 3.81 16 32 H 0.15 3.14 8.01 -2.91 -0.02 3.11 16 33 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.08 2.54 8.06 -2.39 -0.02 2.52 16 36 H 0.09 3.64 3.34 -2.38 -0.01 3.63 16 37 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.06 1.89 6.25 -2.39 -0.01 1.87 16 40 H 0.41 14.70 8.03 -96.75 -0.78 13.92 16 41 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 42 H 0.08 3.92 5.94 -2.39 -0.01 3.91 16 43 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.78 6.71 -2.38 -0.02 1.77 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -59.29 356.08 2.49 -56.79 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: 0.21 Total: 40.82 kcal Atomic # 6 Polarization: -75.57 SS G_CDS: 3.84 Total: -71.73 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -0.28 Total: -91.46 kcal Atomic # 8 Polarization: -75.99 SS G_CDS: -3.04 Total: -79.03 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 101.62 SS G_CDS: -0.26 Total: 101.36 kcal Total: -59.29 2.49 -56.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613013118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.001 kcal (2) G-P(sol) polarization free energy of solvation -59.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds