Wall clock time and date at job start Tue Mar 31 2020 15:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.53003 * 109.46867 * 120.00328 * 2 1 3 5 5 N 1.46497 * 109.47085 * 65.97880 * 4 2 1 6 6 C 1.46505 * 120.00015 * 84.00642 * 5 4 2 7 7 C 1.52996 * 109.47022 * 64.10508 * 6 5 4 8 8 C 1.53000 * 109.46615 * 304.10328 * 6 5 4 9 9 S 1.65598 * 120.00072 * 263.99595 * 5 4 2 10 10 O 1.42102 * 106.40145 * 23.54842 * 9 5 4 11 11 O 1.42101 * 106.40034 * 156.46183 * 9 5 4 12 12 C 1.76194 * 107.22355 * 270.00710 * 9 5 4 13 13 C 1.38661 * 119.87531 * 269.72865 * 12 9 5 14 14 C 1.38609 * 120.50396 * 179.72159 * 13 12 9 15 15 C 1.37644 * 120.24733 * 0.54991 * 14 13 12 16 16 C 1.40701 * 119.74149 * 359.72531 * 15 14 13 17 17 C 1.41392 * 120.24289 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00119 * 150.71423 * 17 16 15 19 19 C 1.39944 * 120.00159 * 330.71780 * 17 16 15 20 20 N 1.30825 * 120.00017 * 343.09833 * 19 17 16 21 21 Si 1.86806 * 120.00170 * 163.09305 * 19 17 16 22 22 H 1.48494 * 109.46974 * 59.99876 * 21 19 17 23 23 H 1.48500 * 109.46946 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46850 * 300.00115 * 21 19 17 25 25 C 1.37601 * 119.87961 * 89.99897 * 12 9 5 26 26 H 1.08997 * 109.47694 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46864 * 300.00292 * 1 2 3 28 28 H 1.08998 * 109.46952 * 59.99892 * 1 2 3 29 29 H 1.09004 * 109.46864 * 239.99708 * 2 1 3 30 30 H 1.08997 * 109.46984 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47238 * 299.99933 * 3 2 1 32 32 H 1.09000 * 109.47228 * 60.00499 * 3 2 1 33 33 H 1.09004 * 109.46913 * 305.97782 * 4 2 1 34 34 H 1.09001 * 109.46978 * 185.97885 * 4 2 1 35 35 H 1.08997 * 109.46948 * 184.10809 * 6 5 4 36 36 H 1.08997 * 109.47505 * 299.99959 * 7 6 5 37 37 H 1.09001 * 109.47515 * 60.00119 * 7 6 5 38 38 H 1.09004 * 109.47137 * 180.02562 * 7 6 5 39 39 H 1.08997 * 109.46658 * 188.04399 * 8 6 5 40 40 H 1.08994 * 109.47399 * 308.04426 * 8 6 5 41 41 H 1.09000 * 109.47196 * 68.04828 * 8 6 5 42 42 H 1.08008 * 119.74806 * 359.97438 * 13 12 9 43 43 H 1.07994 * 119.87990 * 180.25685 * 14 13 12 44 44 H 1.08001 * 120.12752 * 179.74939 * 15 14 13 45 45 H 0.96999 * 119.99992 * 179.97438 * 20 19 17 46 46 H 1.07992 * 120.12071 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6726 -2.1378 1.1794 6 6 2.5170 -3.0778 0.4380 7 6 3.8903 -3.1664 1.1066 8 6 2.6815 -2.5887 -1.0024 9 16 0.3031 -2.6764 1.9386 10 8 -0.5522 -1.5493 2.0707 11 8 -0.0823 -3.8705 1.2715 12 6 0.7632 -3.1460 3.5733 13 6 1.1642 -4.4481 3.8309 14 6 1.5345 -4.8302 5.1108 15 6 1.4969 -3.9214 6.1438 16 6 1.0861 -2.5988 5.8953 17 6 1.0440 -1.6564 6.9485 18 1 1.1996 -0.6079 6.7415 19 6 0.8008 -2.0822 8.2593 20 7 0.2920 -3.2674 8.4782 21 14 1.2029 -0.9583 9.6963 22 1 0.4203 0.2979 9.5762 23 1 0.8551 -1.6391 10.9694 24 1 2.6536 -0.6408 9.6855 25 6 0.7179 -2.2207 4.5908 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.5918 -0.2730 2.1360 34 1 3.1247 -0.6296 1.3044 35 1 2.0495 -4.0625 0.4361 36 1 4.3577 -2.1818 1.1085 37 1 3.7730 -3.5149 2.1327 38 1 4.5187 -3.8655 0.5547 39 1 3.1871 -3.3545 -1.5905 40 1 1.7002 -2.3890 -1.4326 41 1 3.2746 -1.6742 -1.0100 42 1 1.1922 -5.1692 3.0272 43 1 1.8491 -5.8460 5.2992 44 1 1.7819 -4.2222 7.1412 45 1 0.1238 -3.5627 9.3867 46 1 0.4015 -1.2081 4.3887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619476448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:34 Heat of formation + Delta-G solvation = -71.912922 kcal Electronic energy + Delta-G solvation = -27095.507951 eV Core-core repulsion = 23497.310621 eV Total energy + Delta-G solvation = -3598.197331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.29837 -37.63724 -36.80141 -35.28553 -34.57219 -33.79633 -30.97559 -30.06740 -29.81576 -27.25843 -26.92974 -25.87687 -25.45022 -21.90221 -21.09625 -20.88709 -20.02597 -18.68254 -18.04471 -17.14982 -15.98248 -15.79943 -15.22623 -14.86351 -14.67188 -14.46270 -14.11605 -14.07818 -13.46577 -13.30850 -13.27311 -13.07169 -12.58861 -12.25615 -12.23385 -12.17725 -11.95635 -11.91794 -11.69556 -11.52946 -11.39763 -11.38417 -11.32879 -11.16249 -11.10946 -10.88353 -10.86021 -10.72858 -10.61142 -10.48670 -10.19610 -9.75530 -9.62156 -9.32382 -8.75536 -8.03096 -7.66236 -6.89931 -4.53051 1.00912 2.19869 2.64432 3.00566 3.02610 3.07440 3.47978 3.84769 4.28940 4.43582 4.78366 4.80019 4.97884 5.05198 5.14143 5.21045 5.25361 5.37626 5.47273 5.62558 5.65473 5.72769 5.74967 5.77866 5.88811 5.94740 6.02515 6.03039 6.04570 6.09768 6.16221 6.19593 6.33482 6.39536 6.50352 6.63716 6.67833 6.72119 6.78763 6.97719 7.06651 7.22683 7.37777 7.69769 7.80617 7.93373 8.39702 8.67940 8.72538 10.07889 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.004221 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.156576 B = 6632.530272 C = 7311.485296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C -0.144 4.144 4 C 0.130 3.870 5 N -0.992 5.992 6 C 0.141 3.859 7 C -0.165 4.165 8 C -0.158 4.158 9 S 2.681 3.319 10 O -0.962 6.962 11 O -0.976 6.976 12 C -0.634 4.634 13 C -0.144 4.144 14 C -0.122 4.122 15 C -0.113 4.113 16 C 0.095 3.905 17 C -0.467 4.467 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.798 5.798 21 Si 0.911 3.089 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.121 4.121 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.284 0.716 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.829 3.520 -12.654 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C -0.202 4.202 4 C 0.004 3.996 5 N -0.828 5.828 6 C 0.035 3.965 7 C -0.224 4.224 8 C -0.217 4.217 9 S 2.779 3.221 10 O -0.952 6.952 11 O -0.967 6.967 12 C -0.725 4.725 13 C -0.165 4.165 14 C -0.141 4.141 15 C -0.133 4.133 16 C 0.092 3.908 17 C -0.497 4.497 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.423 5.423 21 Si 0.735 3.265 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.143 4.143 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.136 0.864 45 H 0.095 0.905 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.892 3.330 -12.851 14.524 hybrid contribution 0.540 0.213 1.482 1.591 sum 6.432 3.543 -11.369 13.534 Atomic orbital electron populations 1.21919 0.94298 1.01848 1.01866 1.21839 0.97102 0.96192 0.99450 1.21770 1.00565 0.95864 1.02011 1.21307 1.00840 0.79109 0.98324 1.57683 1.44275 1.14672 1.66165 1.20834 0.91662 0.92879 0.91120 1.22194 0.96270 1.02127 1.01783 1.22269 1.02184 1.01542 0.95690 1.01983 0.72927 0.73000 0.74203 1.93559 1.62789 1.51582 1.87259 1.93491 1.80700 1.48027 1.74482 1.29890 1.19361 1.02855 1.20433 1.20076 1.05875 0.93465 0.97123 1.20801 1.01711 0.98185 0.93407 1.21525 0.99616 0.94238 0.97926 1.17663 0.88777 0.92826 0.91571 1.19517 1.43791 0.95298 0.91051 0.90037 1.25896 0.92118 0.95585 1.00553 1.69773 1.29860 1.19032 1.23612 0.86319 0.80173 0.80731 0.79275 1.18842 1.20273 1.18764 1.20777 1.02576 0.97437 0.93469 0.93504 0.91020 0.93609 0.89985 0.92856 0.92719 0.92356 0.89763 0.90567 0.88322 0.92228 0.91498 0.91879 0.91922 0.92016 0.91875 0.87738 0.88382 0.86380 0.90549 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.67 37.16 0.28 -1.67 16 2 C -0.13 -1.46 2.82 -90.62 -0.26 -1.71 16 3 C -0.14 -1.39 9.19 37.15 0.34 -1.05 16 4 C 0.13 1.69 4.49 -4.04 -0.02 1.67 16 5 N -0.99 -14.64 2.47 -107.30 -0.27 -14.91 16 6 C 0.14 1.78 3.27 -67.93 -0.22 1.56 16 7 C -0.16 -1.86 9.23 37.16 0.34 -1.52 16 8 C -0.16 -1.59 7.67 37.16 0.29 -1.31 16 9 S 2.68 51.22 4.89 -107.50 -0.53 50.69 16 10 O -0.96 -19.71 12.82 -57.17 -0.73 -20.44 16 11 O -0.98 -20.31 15.79 -57.17 -0.90 -21.21 16 12 C -0.63 -13.95 5.97 -39.66 -0.24 -14.19 16 13 C -0.14 -3.16 9.53 -39.29 -0.37 -3.53 16 14 C -0.12 -2.73 10.02 -39.66 -0.40 -3.13 16 15 C -0.11 -2.81 8.67 -38.87 -0.34 -3.15 16 16 C 0.10 2.45 5.52 -106.83 -0.59 1.86 16 17 C -0.47 -11.96 9.04 -37.74 -0.34 -12.30 16 18 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 19 C 0.08 1.86 5.12 -17.34 -0.09 1.77 16 20 N -0.80 -20.14 11.24 55.55 0.62 -19.51 16 21 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 23 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 25 C -0.12 -2.91 9.26 -38.87 -0.36 -3.27 16 26 H 0.05 0.72 5.83 -51.93 -0.30 0.42 16 27 H 0.07 1.08 7.55 -51.93 -0.39 0.69 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.86 4.57 -51.93 -0.24 0.63 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.19 7.57 -51.93 -0.39 0.80 16 34 H 0.08 0.84 6.67 -51.93 -0.35 0.49 16 35 H 0.10 1.35 6.85 -51.93 -0.36 0.99 16 36 H 0.06 0.61 6.84 -51.93 -0.36 0.26 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.66 7.53 -51.93 -0.39 0.27 16 41 H 0.06 0.56 6.73 -51.93 -0.35 0.21 16 42 H 0.10 2.07 7.59 -52.48 -0.40 1.68 16 43 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 44 H 0.12 2.98 6.50 -52.49 -0.34 2.63 16 45 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 46 H 0.11 2.54 7.60 -52.49 -0.40 2.14 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -29.27 368.67 -10.44 -39.71 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.19 Total: 6.98 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: -1.97 Total: -39.96 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.36 Total: -34.42 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.64 Total: -41.65 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: 51.22 SS G_CDS: -0.53 Total: 50.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.27 -10.44 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.206 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds