Wall clock time and date at job start Tue Mar 31 2020 15:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.53003 * 109.46867 * 120.00328 * 2 1 3 5 5 N 1.46497 * 109.47085 * 65.97880 * 4 2 1 6 6 C 1.46505 * 120.00015 * 84.00642 * 5 4 2 7 7 C 1.52996 * 109.47022 * 64.10508 * 6 5 4 8 8 C 1.53000 * 109.46615 * 304.10328 * 6 5 4 9 9 S 1.65598 * 120.00072 * 263.99595 * 5 4 2 10 10 O 1.42102 * 106.40145 * 23.54842 * 9 5 4 11 11 O 1.42101 * 106.40034 * 156.46183 * 9 5 4 12 12 C 1.76194 * 107.22355 * 270.00710 * 9 5 4 13 13 C 1.38661 * 119.87531 * 269.72865 * 12 9 5 14 14 C 1.38609 * 120.50396 * 179.72159 * 13 12 9 15 15 C 1.37644 * 120.24733 * 0.54991 * 14 13 12 16 16 C 1.40701 * 119.74149 * 359.72531 * 15 14 13 17 17 C 1.41392 * 120.24289 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00119 * 150.71423 * 17 16 15 19 19 C 1.39944 * 120.00159 * 330.71780 * 17 16 15 20 20 N 1.30825 * 120.00017 * 343.09833 * 19 17 16 21 21 Si 1.86806 * 120.00170 * 163.09305 * 19 17 16 22 22 H 1.48494 * 109.46974 * 59.99876 * 21 19 17 23 23 H 1.48500 * 109.46946 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46850 * 300.00115 * 21 19 17 25 25 C 1.37601 * 119.87961 * 89.99897 * 12 9 5 26 26 H 1.08997 * 109.47694 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46864 * 300.00292 * 1 2 3 28 28 H 1.08998 * 109.46952 * 59.99892 * 1 2 3 29 29 H 1.09004 * 109.46864 * 239.99708 * 2 1 3 30 30 H 1.08997 * 109.46984 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47238 * 299.99933 * 3 2 1 32 32 H 1.09000 * 109.47228 * 60.00499 * 3 2 1 33 33 H 1.09004 * 109.46913 * 305.97782 * 4 2 1 34 34 H 1.09001 * 109.46978 * 185.97885 * 4 2 1 35 35 H 1.08997 * 109.46948 * 184.10809 * 6 5 4 36 36 H 1.08997 * 109.47505 * 299.99959 * 7 6 5 37 37 H 1.09001 * 109.47515 * 60.00119 * 7 6 5 38 38 H 1.09004 * 109.47137 * 180.02562 * 7 6 5 39 39 H 1.08997 * 109.46658 * 188.04399 * 8 6 5 40 40 H 1.08994 * 109.47399 * 308.04426 * 8 6 5 41 41 H 1.09000 * 109.47196 * 68.04828 * 8 6 5 42 42 H 1.08008 * 119.74806 * 359.97438 * 13 12 9 43 43 H 1.07994 * 119.87990 * 180.25685 * 14 13 12 44 44 H 1.08001 * 120.12752 * 179.74939 * 15 14 13 45 45 H 0.96999 * 119.99992 * 179.97438 * 20 19 17 46 46 H 1.07992 * 120.12071 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6726 -2.1378 1.1794 6 6 2.5170 -3.0778 0.4380 7 6 3.8903 -3.1664 1.1066 8 6 2.6815 -2.5887 -1.0024 9 16 0.3031 -2.6764 1.9386 10 8 -0.5522 -1.5493 2.0707 11 8 -0.0823 -3.8705 1.2715 12 6 0.7632 -3.1460 3.5733 13 6 1.1642 -4.4481 3.8309 14 6 1.5345 -4.8302 5.1108 15 6 1.4969 -3.9214 6.1438 16 6 1.0861 -2.5988 5.8953 17 6 1.0440 -1.6564 6.9485 18 1 1.1996 -0.6079 6.7415 19 6 0.8008 -2.0822 8.2593 20 7 0.2920 -3.2674 8.4782 21 14 1.2029 -0.9583 9.6963 22 1 0.4203 0.2979 9.5762 23 1 0.8551 -1.6391 10.9694 24 1 2.6536 -0.6408 9.6855 25 6 0.7179 -2.2207 4.5908 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.5918 -0.2730 2.1360 34 1 3.1247 -0.6296 1.3044 35 1 2.0495 -4.0625 0.4361 36 1 4.3577 -2.1818 1.1085 37 1 3.7730 -3.5149 2.1327 38 1 4.5187 -3.8655 0.5547 39 1 3.1871 -3.3545 -1.5905 40 1 1.7002 -2.3890 -1.4326 41 1 3.2746 -1.6742 -1.0100 42 1 1.1922 -5.1692 3.0272 43 1 1.8491 -5.8460 5.2992 44 1 1.7819 -4.2222 7.1412 45 1 0.1238 -3.5627 9.3867 46 1 0.4015 -1.2081 4.3887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619476448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:33 Heat of formation + Delta-G solvation = -87.802158 kcal Electronic energy + Delta-G solvation = -27096.196960 eV Core-core repulsion = 23497.310621 eV Total energy + Delta-G solvation = -3598.886339 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.46792 -39.34676 -38.37493 -36.89058 -35.65915 -35.55217 -32.03253 -31.92316 -31.61615 -28.11827 -27.88230 -27.34623 -26.87859 -23.67856 -22.83778 -22.04544 -21.07310 -20.15598 -19.52171 -18.67519 -17.77477 -17.15546 -16.86072 -16.58029 -15.93357 -15.63023 -15.37364 -15.22631 -15.07476 -14.89550 -14.33504 -14.19630 -14.02342 -13.76058 -13.47203 -13.30230 -13.28750 -13.12799 -13.06465 -12.96665 -12.88641 -12.80249 -12.74674 -12.60595 -12.43639 -12.28618 -12.21841 -11.87476 -11.79273 -11.57037 -11.54881 -11.30682 -11.13438 -11.11943 -9.98298 -9.81666 -9.54396 -8.73035 -6.46966 -0.51082 0.38704 0.82479 1.36646 1.45761 1.49296 2.07483 2.17934 2.56684 2.78553 3.39395 3.46807 3.73591 4.00838 4.06727 4.22276 4.26039 4.28769 4.31944 4.39229 4.48400 4.71373 4.76946 4.80117 4.83080 4.86029 4.87934 4.90939 4.96579 5.04129 5.05394 5.09019 5.17388 5.19038 5.22740 5.30982 5.39613 5.46407 5.49202 5.50416 5.53805 5.64612 5.82755 5.84406 5.91674 6.07910 6.50140 6.79157 6.83045 8.27141 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.004221 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.156576 B = 6632.530272 C = 7311.485296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.141 4.141 4 C 0.121 3.879 5 N -0.981 5.981 6 C 0.130 3.870 7 C -0.162 4.162 8 C -0.154 4.154 9 S 2.700 3.300 10 O -0.979 6.979 11 O -0.993 6.993 12 C -0.642 4.642 13 C -0.147 4.147 14 C -0.122 4.122 15 C -0.135 4.135 16 C 0.067 3.933 17 C -0.503 4.503 18 H 0.081 0.919 19 C 0.037 3.963 20 N -0.830 5.830 21 Si 0.984 3.016 22 H -0.261 1.261 23 H -0.268 1.268 24 H -0.257 1.257 25 C -0.139 4.139 26 H 0.024 0.976 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.291 0.709 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 4.168 -14.270 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.199 4.199 4 C -0.004 4.004 5 N -0.820 5.820 6 C 0.026 3.974 7 C -0.220 4.220 8 C -0.213 4.213 9 S 2.795 3.205 10 O -0.969 6.969 11 O -0.983 6.983 12 C -0.730 4.730 13 C -0.167 4.167 14 C -0.141 4.141 15 C -0.155 4.155 16 C 0.063 3.937 17 C -0.532 4.532 18 H 0.099 0.901 19 C -0.178 4.178 20 N -0.456 5.456 21 Si 0.804 3.196 22 H -0.185 1.185 23 H -0.192 1.192 24 H -0.181 1.181 25 C -0.160 4.160 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.679 3.954 -14.443 16.828 hybrid contribution -0.014 -0.036 1.817 1.817 sum 7.665 3.918 -12.626 15.281 Atomic orbital electron populations 1.21944 0.96252 1.00352 1.01799 1.21837 0.95350 0.97611 0.99189 1.21756 1.01736 0.94193 1.02227 1.21575 1.02389 0.77817 0.98583 1.57437 1.43586 1.15849 1.65102 1.21150 0.91634 0.91932 0.92731 1.22183 0.95842 1.03532 1.00492 1.22257 1.02446 1.03052 0.93539 1.01402 0.73687 0.72335 0.73082 1.93538 1.64298 1.51867 1.87231 1.93460 1.81651 1.49074 1.74100 1.30448 1.17729 1.02671 1.22184 1.20429 1.04904 0.93877 0.97534 1.21127 1.00784 0.99157 0.93077 1.21522 1.01173 0.94653 0.98154 1.18027 0.89463 0.93621 0.92544 1.19797 1.45614 0.95455 0.92331 0.90074 1.26758 0.91183 0.97098 1.02778 1.69825 1.30451 1.20702 1.24654 0.85222 0.80069 0.78534 0.75754 1.18480 1.19194 1.18063 1.20840 1.03532 0.97971 0.93628 0.95678 0.93135 0.91662 0.88142 0.90968 0.91453 0.93281 0.91631 0.87857 0.89597 0.90879 0.93954 0.89420 0.89707 0.92706 0.90118 0.85532 0.85499 0.87505 0.89842 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 7.67 71.98 0.55 -3.36 16 2 C -0.12 -2.52 2.82 -10.79 -0.03 -2.55 16 3 C -0.14 -2.34 9.19 71.98 0.66 -1.67 16 4 C 0.12 2.98 4.49 86.38 0.39 3.36 16 5 N -0.98 -27.97 2.47 -493.39 -1.22 -29.19 16 6 C 0.13 3.02 3.27 44.99 0.15 3.17 16 7 C -0.16 -3.25 9.23 71.98 0.66 -2.58 16 8 C -0.15 -2.57 7.67 71.98 0.55 -2.02 16 9 S 2.70 104.04 4.89 -56.49 -0.28 103.77 16 10 O -0.98 -41.25 12.82 -128.00 -1.64 -42.89 16 11 O -0.99 -41.14 15.79 -128.00 -2.02 -43.16 16 12 C -0.64 -28.84 5.97 22.22 0.13 -28.71 16 13 C -0.15 -6.43 9.53 22.46 0.21 -6.22 16 14 C -0.12 -5.54 10.02 22.22 0.22 -5.32 16 15 C -0.14 -6.95 8.67 22.73 0.20 -6.75 16 16 C 0.07 3.58 5.52 -21.29 -0.12 3.46 16 17 C -0.50 -26.78 9.04 23.46 0.21 -26.57 16 18 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 19 C 0.04 1.83 5.12 85.26 0.44 2.26 16 20 N -0.83 -43.07 11.24 21.83 0.25 -42.82 16 21 Si 0.98 37.51 29.59 68.60 2.03 39.54 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 23 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 25 C -0.14 -6.92 9.26 22.73 0.21 -6.71 16 26 H 0.02 0.76 5.83 -2.39 -0.01 0.75 16 27 H 0.05 1.54 7.55 -2.38 -0.02 1.52 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.10 1.77 4.57 -2.38 -0.01 1.75 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.88 7.57 -2.39 -0.02 1.86 16 34 H 0.10 1.98 6.67 -2.39 -0.02 1.97 16 35 H 0.09 2.22 6.85 -2.39 -0.02 2.20 16 36 H 0.07 1.26 6.84 -2.39 -0.02 1.24 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 1.01 7.53 -2.39 -0.02 0.99 16 41 H 0.08 1.07 6.73 -2.39 -0.02 1.06 16 42 H 0.13 4.91 7.59 -2.91 -0.02 4.89 16 43 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 44 H 0.11 5.62 6.50 -2.91 -0.02 5.60 16 45 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 46 H 0.11 5.30 7.60 -2.91 -0.02 5.28 16 Total: -1.00 -65.64 368.67 2.52 -63.12 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.96 Total: 31.87 kcal Atomic # 6 Polarization: -84.66 SS G_CDS: 4.44 Total: -80.22 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -0.97 Total: -72.01 kcal Atomic # 8 Polarization: -82.39 SS G_CDS: -3.66 Total: -86.05 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Atomic # 16 Polarization: 104.04 SS G_CDS: -0.28 Total: 103.77 kcal Total: -65.64 2.52 -63.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.684 kcal (2) G-P(sol) polarization free energy of solvation -65.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds