Wall clock time and date at job start Tue Mar 31 2020 14:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47281 * 2 1 4 4 C 1.53005 * 109.46841 * 240.00474 * 2 1 3 5 5 C 1.52996 * 109.47278 * 120.00332 * 2 1 3 6 6 C 1.52996 * 109.47198 * 60.00005 * 5 2 1 7 7 C 1.53002 * 109.47194 * 180.02562 * 6 5 2 8 8 N 1.46505 * 109.47278 * 179.97438 * 7 6 5 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 6 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.09006 * 109.47004 * 299.99679 * 1 2 3 27 27 H 1.08998 * 109.47432 * 59.99343 * 1 2 3 28 28 H 1.08994 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47035 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46905 * 300.00718 * 3 2 1 31 31 H 1.09006 * 109.46840 * 60.00220 * 3 2 1 32 32 H 1.09003 * 109.46821 * 299.99776 * 4 2 1 33 33 H 1.08990 * 109.47259 * 59.99974 * 4 2 1 34 34 H 1.08998 * 109.46935 * 180.02562 * 4 2 1 35 35 H 1.08997 * 109.46933 * 299.99711 * 5 2 1 36 36 H 1.08998 * 109.47431 * 179.97438 * 5 2 1 37 37 H 1.08997 * 109.47419 * 60.00003 * 6 5 2 38 38 H 1.09003 * 109.46770 * 299.99708 * 6 5 2 39 39 H 1.08997 * 109.47200 * 59.99545 * 7 6 5 40 40 H 1.09003 * 109.46759 * 299.99391 * 7 6 5 41 41 H 0.97007 * 119.99457 * 345.00054 * 8 7 6 42 42 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 43 43 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 44 44 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 45 45 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 46 46 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2491 7 6 2.0396 -2.8849 2.4986 8 7 1.5508 -4.2660 2.4989 9 16 2.2303 -5.3847 3.5133 10 8 3.6376 -5.2665 3.3559 11 8 1.5240 -6.5994 3.3019 12 6 1.8700 -4.8800 5.1626 13 6 2.7429 -4.0368 5.8332 14 6 2.4753 -3.6368 7.1330 15 6 1.3319 -4.0645 7.7687 16 6 0.4360 -4.9156 7.0959 17 6 -0.7415 -5.3618 7.7390 18 1 -1.2150 -6.2795 7.4226 19 6 -1.2933 -4.6145 8.7855 20 7 -0.9521 -3.3616 8.9455 21 14 -2.5173 -5.4056 9.9542 22 1 -2.7332 -6.8212 9.5608 23 1 -1.9843 -5.3530 11.3392 24 1 -3.8068 -4.6718 9.8917 25 6 0.7209 -5.3200 5.7784 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9564 0.8901 32 1 1.6766 -1.7489 -1.2494 33 1 1.6766 -0.2073 -2.1392 34 1 3.1299 -0.7216 -1.2491 35 1 1.6767 -0.2075 2.1391 36 1 3.1300 -0.7217 1.2489 37 1 1.8934 -2.6776 0.3591 38 1 0.4400 -2.1637 1.2492 39 1 1.6760 -2.3710 3.3884 40 1 3.1296 -2.8849 2.4989 41 1 0.8291 -4.5251 1.9048 42 1 3.6402 -3.6925 5.3404 43 1 3.1645 -2.9834 7.6475 44 1 1.1233 -3.7483 8.7801 45 1 -1.3349 -2.8434 9.6707 46 1 0.0402 -5.9732 5.2527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619486029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:08 Heat of formation + Delta-G solvation = -92.820069 kcal Electronic energy + Delta-G solvation = -25447.056830 eV Core-core repulsion = 21847.952898 eV Total energy + Delta-G solvation = -3599.103932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.46236 -37.63773 -36.65192 -35.40776 -35.26490 -33.85027 -30.94417 -30.07968 -29.78541 -27.49419 -27.46246 -25.53858 -25.41116 -22.02956 -21.76353 -20.96953 -19.19020 -18.65840 -17.91913 -16.91907 -16.07266 -15.95066 -15.53189 -15.14124 -14.87454 -14.69798 -14.36282 -14.25827 -14.12862 -13.47414 -13.34387 -12.96996 -12.81929 -12.58637 -12.17014 -12.00399 -11.90268 -11.84939 -11.81249 -11.59618 -11.51185 -11.41837 -11.38589 -11.37664 -11.11553 -10.98579 -10.90155 -10.62333 -10.60660 -10.55958 -10.47282 -9.77711 -9.64915 -9.36296 -9.10572 -8.03915 -7.70870 -6.93723 -4.54025 1.06307 2.19932 2.62200 2.99773 3.03762 3.06888 3.60407 3.82446 4.25954 4.43620 4.50187 4.63244 4.63633 4.96396 5.01179 5.11932 5.26363 5.37073 5.41609 5.43110 5.46372 5.59966 5.62246 5.64133 5.72369 5.75267 5.79355 5.89669 5.99548 6.04606 6.05971 6.08337 6.17319 6.19525 6.30059 6.35660 6.65456 6.75988 6.85055 7.02727 7.20416 7.26610 7.38608 7.72582 7.80879 7.94071 8.40129 8.66485 8.71527 10.01698 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.003174 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.007135 B = 8819.777258 C = 9906.362140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.110 4.110 6 C -0.129 4.129 7 C 0.118 3.882 8 N -1.122 6.122 9 S 2.690 3.310 10 O -0.976 6.976 11 O -0.974 6.974 12 C -0.631 4.631 13 C -0.149 4.149 14 C -0.121 4.121 15 C -0.119 4.119 16 C 0.091 3.909 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.911 3.089 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.124 4.124 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.412 0.588 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.125 0.875 45 H 0.283 0.717 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 8.033 -13.116 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.148 4.148 6 C -0.168 4.168 7 C -0.008 4.008 8 N -0.880 5.880 9 S 2.786 3.214 10 O -0.966 6.966 11 O -0.965 6.965 12 C -0.723 4.723 13 C -0.170 4.170 14 C -0.140 4.140 15 C -0.139 4.139 16 C 0.087 3.913 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.145 4.145 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.246 0.754 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.142 0.858 45 H 0.093 0.907 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.844 7.552 -13.144 15.423 hybrid contribution -1.244 0.216 0.986 1.602 sum 1.600 7.767 -12.157 14.515 Atomic orbital electron populations 1.21949 0.94626 1.02090 1.01574 1.20545 0.95731 0.95331 0.95409 1.21873 1.00936 0.95452 1.01618 1.21945 1.00987 1.00497 0.96738 1.21610 1.00904 0.94729 0.97563 1.21912 1.01663 0.95551 0.97664 1.21282 0.99372 0.81033 0.99157 1.55543 1.52834 1.22913 1.56665 1.01600 0.73226 0.72473 0.74122 1.93505 1.30256 1.86421 1.86461 1.93533 1.74416 1.42429 1.86115 1.29751 1.06066 1.14589 1.21915 1.20084 0.98800 1.01576 0.96580 1.20808 0.97646 1.00543 0.95017 1.21637 0.92467 0.99760 1.00008 1.17693 0.92557 0.90848 0.90158 1.19652 1.07769 1.07754 1.13731 0.89877 1.25937 0.97062 0.94074 0.97232 1.69793 1.37684 1.06852 1.27595 0.86211 0.79672 0.80742 0.79889 1.18205 1.19595 1.19864 1.20782 0.95456 1.02629 0.95630 0.92552 0.93027 0.92178 0.92695 0.92889 0.92612 0.92212 0.93020 0.92678 0.91358 0.91533 0.91016 0.90918 0.91363 0.90584 0.75427 0.87625 0.88403 0.85753 0.90653 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.12 37.16 0.30 -0.88 16 2 C -0.07 -0.57 0.80 -154.50 -0.12 -0.69 16 3 C -0.14 -1.07 8.47 37.16 0.31 -0.75 16 4 C -0.14 -1.11 8.12 37.16 0.30 -0.81 16 5 C -0.11 -1.00 4.27 -26.74 -0.11 -1.11 16 6 C -0.13 -1.29 4.65 -26.73 -0.12 -1.41 16 7 C 0.12 1.52 6.22 -4.04 -0.03 1.49 16 8 N -1.12 -16.14 6.00 -10.61 -0.06 -16.20 16 9 S 2.69 50.50 5.73 -107.50 -0.62 49.89 16 10 O -0.98 -19.93 16.74 -57.17 -0.96 -20.89 16 11 O -0.97 -20.54 17.27 -57.17 -0.99 -21.53 16 12 C -0.63 -13.77 5.94 -39.66 -0.24 -14.01 16 13 C -0.15 -3.22 9.53 -39.29 -0.37 -3.59 16 14 C -0.12 -2.70 10.02 -39.66 -0.40 -3.09 16 15 C -0.12 -2.95 8.70 -38.87 -0.34 -3.29 16 16 C 0.09 2.35 5.58 -106.82 -0.60 1.75 16 17 C -0.46 -11.79 9.05 -37.75 -0.34 -12.13 16 18 H 0.08 2.06 7.91 -52.49 -0.41 1.65 16 19 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 20 N -0.79 -19.50 10.95 55.55 0.61 -18.89 16 21 Si 0.91 18.00 29.60 -169.99 -5.03 12.97 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.12 -2.97 9.26 -38.87 -0.36 -3.33 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 38 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 41 H 0.41 4.96 8.65 -34.48 -0.30 4.66 16 42 H 0.11 2.05 7.61 -52.49 -0.40 1.65 16 43 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.12 3.14 6.15 -52.49 -0.32 2.81 16 45 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 46 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -29.98 380.65 -10.87 -40.85 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.36 Total: 8.22 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: -2.20 Total: -40.16 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.54 Total: -35.09 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.94 Total: -42.42 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 50.50 SS G_CDS: -0.62 Total: 49.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.98 -10.87 -40.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.970 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds