Wall clock time and date at job start Tue Mar 31 2020 14:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47281 * 2 1 4 4 C 1.53005 * 109.46841 * 240.00474 * 2 1 3 5 5 C 1.52996 * 109.47278 * 120.00332 * 2 1 3 6 6 C 1.52996 * 109.47198 * 60.00005 * 5 2 1 7 7 C 1.53002 * 109.47194 * 180.02562 * 6 5 2 8 8 N 1.46505 * 109.47278 * 179.97438 * 7 6 5 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 6 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.09006 * 109.47004 * 299.99679 * 1 2 3 27 27 H 1.08998 * 109.47432 * 59.99343 * 1 2 3 28 28 H 1.08994 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47035 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46905 * 300.00718 * 3 2 1 31 31 H 1.09006 * 109.46840 * 60.00220 * 3 2 1 32 32 H 1.09003 * 109.46821 * 299.99776 * 4 2 1 33 33 H 1.08990 * 109.47259 * 59.99974 * 4 2 1 34 34 H 1.08998 * 109.46935 * 180.02562 * 4 2 1 35 35 H 1.08997 * 109.46933 * 299.99711 * 5 2 1 36 36 H 1.08998 * 109.47431 * 179.97438 * 5 2 1 37 37 H 1.08997 * 109.47419 * 60.00003 * 6 5 2 38 38 H 1.09003 * 109.46770 * 299.99708 * 6 5 2 39 39 H 1.08997 * 109.47200 * 59.99545 * 7 6 5 40 40 H 1.09003 * 109.46759 * 299.99391 * 7 6 5 41 41 H 0.97007 * 119.99457 * 345.00054 * 8 7 6 42 42 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 43 43 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 44 44 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 45 45 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 46 46 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2491 7 6 2.0396 -2.8849 2.4986 8 7 1.5508 -4.2660 2.4989 9 16 2.2303 -5.3847 3.5133 10 8 3.6376 -5.2665 3.3559 11 8 1.5240 -6.5994 3.3019 12 6 1.8700 -4.8800 5.1626 13 6 2.7429 -4.0368 5.8332 14 6 2.4753 -3.6368 7.1330 15 6 1.3319 -4.0645 7.7687 16 6 0.4360 -4.9156 7.0959 17 6 -0.7415 -5.3618 7.7390 18 1 -1.2150 -6.2795 7.4226 19 6 -1.2933 -4.6145 8.7855 20 7 -0.9521 -3.3616 8.9455 21 14 -2.5173 -5.4056 9.9542 22 1 -2.7332 -6.8212 9.5608 23 1 -1.9843 -5.3530 11.3392 24 1 -3.8068 -4.6718 9.8917 25 6 0.7209 -5.3200 5.7784 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9564 0.8901 32 1 1.6766 -1.7489 -1.2494 33 1 1.6766 -0.2073 -2.1392 34 1 3.1299 -0.7216 -1.2491 35 1 1.6767 -0.2075 2.1391 36 1 3.1300 -0.7217 1.2489 37 1 1.8934 -2.6776 0.3591 38 1 0.4400 -2.1637 1.2492 39 1 1.6760 -2.3710 3.3884 40 1 3.1296 -2.8849 2.4989 41 1 0.8291 -4.5251 1.9048 42 1 3.6402 -3.6925 5.3404 43 1 3.1645 -2.9834 7.6475 44 1 1.1233 -3.7483 8.7801 45 1 -1.3349 -2.8434 9.6707 46 1 0.0402 -5.9732 5.2527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619486029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:07 Heat of formation + Delta-G solvation = -110.277655 kcal Electronic energy + Delta-G solvation = -25447.813848 eV Core-core repulsion = 21847.952898 eV Total energy + Delta-G solvation = -3599.860950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.44984 -39.17663 -38.25421 -36.90716 -36.46468 -35.66976 -31.91649 -31.86939 -31.58137 -28.09627 -28.07060 -27.35433 -26.37132 -23.68124 -22.91320 -22.65699 -20.62156 -19.72553 -19.31077 -18.38424 -17.74163 -17.33000 -16.85885 -16.58535 -16.25777 -16.05199 -15.33657 -15.12958 -15.07750 -14.98290 -14.94782 -14.31265 -13.86513 -13.73859 -13.65272 -13.31599 -13.18779 -13.11001 -13.07602 -13.03608 -12.80588 -12.65597 -12.60509 -12.56554 -12.47023 -12.38141 -12.20774 -11.83162 -11.55336 -11.37377 -11.28615 -11.27057 -11.20858 -11.14904 -10.39479 -9.84930 -9.56421 -8.73972 -6.45593 -0.47044 0.40628 0.83827 1.37100 1.44147 1.52098 2.15786 2.17352 2.55203 2.79423 3.45905 3.53009 3.80917 3.95686 3.97790 4.16468 4.24317 4.30488 4.44558 4.47402 4.61218 4.71984 4.74763 4.83867 4.84489 4.90176 4.91451 4.92527 4.99936 5.04932 5.10376 5.15344 5.16574 5.20570 5.27852 5.29604 5.35966 5.40997 5.50120 5.56496 5.62116 5.63580 5.88604 5.93767 6.09780 6.15113 6.52347 6.79264 6.84391 8.24031 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.003174 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.007135 B = 8819.777258 C = 9906.362140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.110 4.110 6 C -0.122 4.122 7 C 0.109 3.891 8 N -1.106 6.106 9 S 2.720 3.280 10 O -0.987 6.987 11 O -0.997 6.997 12 C -0.638 4.638 13 C -0.148 4.148 14 C -0.122 4.122 15 C -0.142 4.142 16 C 0.062 3.938 17 C -0.498 4.498 18 H 0.077 0.923 19 C 0.038 3.962 20 N -0.820 5.820 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.262 1.262 24 H -0.263 1.263 25 C -0.146 4.146 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.426 0.574 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.292 0.708 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 8.800 -14.127 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.148 4.148 6 C -0.161 4.161 7 C -0.016 4.016 8 N -0.868 5.868 9 S 2.813 3.187 10 O -0.977 6.977 11 O -0.987 6.987 12 C -0.727 4.727 13 C -0.169 4.169 14 C -0.141 4.141 15 C -0.161 4.161 16 C 0.059 3.941 17 C -0.527 4.527 18 H 0.095 0.905 19 C -0.177 4.177 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.188 1.188 25 C -0.167 4.167 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.262 0.738 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.069 8.329 -14.135 16.691 hybrid contribution -1.227 0.053 1.181 1.704 sum 1.842 8.383 -12.954 15.539 Atomic orbital electron populations 1.21958 0.94684 1.02040 1.01637 1.20537 0.95668 0.95601 0.95106 1.21866 1.01088 0.95083 1.01786 1.21942 1.01070 1.00457 0.96657 1.21615 1.01129 0.94100 0.97945 1.21889 1.01951 0.95789 0.96495 1.21517 0.99711 0.79939 1.00450 1.55192 1.53196 1.23085 1.55334 1.00728 0.72747 0.72188 0.73056 1.93489 1.31148 1.86741 1.86282 1.93498 1.74844 1.44341 1.86062 1.30266 1.04952 1.13489 1.23984 1.20472 0.99345 1.00721 0.96317 1.21148 0.97193 1.00313 0.95483 1.21645 0.93686 1.00879 0.99934 1.18050 0.93218 0.91700 0.91164 1.19871 1.08710 1.08356 1.15749 0.90457 1.26728 0.98666 0.94298 0.98045 1.69819 1.38651 1.07822 1.28291 0.85149 0.77455 0.79471 0.77632 1.18441 1.18689 1.18787 1.20856 0.96763 1.03583 0.95470 0.93141 0.92359 0.92277 0.92463 0.92257 0.92946 0.92236 0.92422 0.92556 0.91935 0.91195 0.89885 0.90457 0.92130 0.90240 0.73772 0.84986 0.85504 0.86889 0.89728 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.12 71.98 0.58 -1.55 16 2 C -0.07 -0.99 0.80 -52.18 -0.04 -1.03 16 3 C -0.14 -1.89 8.47 71.98 0.61 -1.28 16 4 C -0.14 -1.90 8.12 71.98 0.58 -1.31 16 5 C -0.11 -1.80 4.27 30.59 0.13 -1.67 16 6 C -0.12 -2.19 4.65 30.59 0.14 -2.05 16 7 C 0.11 2.62 6.22 86.38 0.54 3.15 16 8 N -1.11 -29.99 6.00 -187.48 -1.12 -31.12 16 9 S 2.72 99.11 5.73 -56.49 -0.32 98.78 16 10 O -0.99 -38.45 16.74 -128.00 -2.14 -40.59 16 11 O -1.00 -41.44 17.27 -128.00 -2.21 -43.65 16 12 C -0.64 -27.67 5.94 22.22 0.13 -27.54 16 13 C -0.15 -6.22 9.53 22.46 0.21 -6.01 16 14 C -0.12 -5.41 10.02 22.22 0.22 -5.18 16 15 C -0.14 -7.19 8.70 22.73 0.20 -6.99 16 16 C 0.06 3.30 5.58 -21.29 -0.12 3.18 16 17 C -0.50 -26.44 9.05 23.46 0.21 -26.23 16 18 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 19 C 0.04 1.87 5.14 85.25 0.44 2.31 16 20 N -0.82 -40.92 10.95 21.83 0.24 -40.68 16 21 Si 0.98 37.12 29.60 68.60 2.03 39.15 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 23 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 24 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 25 C -0.15 -7.18 9.26 22.73 0.21 -6.97 16 26 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.87 6.43 -2.39 -0.02 0.85 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.78 6.43 -2.39 -0.02 0.77 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.32 6.43 -2.39 -0.02 1.31 16 38 H 0.08 1.33 6.43 -2.39 -0.02 1.31 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.87 7.75 -2.39 -0.02 1.85 16 41 H 0.43 9.45 8.65 -96.74 -0.84 8.61 16 42 H 0.13 4.80 7.61 -2.91 -0.02 4.78 16 43 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 44 H 0.11 5.89 6.15 -2.91 -0.02 5.87 16 45 H 0.29 13.02 8.30 -92.70 -0.77 12.25 16 46 H 0.11 5.25 7.60 -2.91 -0.02 5.23 16 Total: -1.00 -64.32 380.65 0.66 -63.67 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.13 Total: 33.62 kcal Atomic # 6 Polarization: -83.23 SS G_CDS: 4.06 Total: -79.17 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -0.89 Total: -71.80 kcal Atomic # 8 Polarization: -79.89 SS G_CDS: -4.35 Total: -84.25 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: 99.11 SS G_CDS: -0.32 Total: 98.78 kcal Total: -64.32 0.66 -63.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.609 kcal (2) G-P(sol) polarization free energy of solvation -64.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds