Wall clock time and date at job start Tue Mar 31 2020 14:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46907 * 2 1 4 4 C 1.53004 * 109.46608 * 60.00462 * 3 2 1 5 5 C 1.52994 * 109.47448 * 64.96904 * 4 3 2 6 6 C 1.52998 * 109.47409 * 300.00162 * 3 2 1 7 7 C 1.52995 * 109.46877 * 299.09308 * 6 3 2 8 8 N 1.46501 * 109.47277 * 179.97438 * 3 2 1 9 9 S 1.65599 * 120.00196 * 188.27233 * 8 3 2 10 10 O 1.42098 * 106.40190 * 53.64974 * 9 8 3 11 11 O 1.42093 * 106.40365 * 186.57118 * 9 8 3 12 12 C 1.76201 * 107.21544 * 300.11290 * 9 8 3 13 13 C 1.38655 * 119.87793 * 280.70141 * 12 9 8 14 14 C 1.38608 * 120.50418 * 179.72257 * 13 12 9 15 15 C 1.37640 * 120.24961 * 0.56115 * 14 13 12 16 16 C 1.40707 * 119.73987 * 359.71834 * 15 14 13 17 17 C 1.41393 * 120.24154 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99737 * 207.35260 * 17 16 15 19 19 C 1.39945 * 120.00208 * 27.34996 * 17 16 15 20 20 N 1.30830 * 120.00063 * 11.75526 * 19 17 16 21 21 Si 1.86795 * 120.00134 * 191.75294 * 19 17 16 22 22 H 1.48504 * 109.47093 * 89.99993 * 21 19 17 23 23 H 1.48499 * 109.47441 * 209.99994 * 21 19 17 24 24 H 1.48505 * 109.47214 * 330.00439 * 21 19 17 25 25 C 1.37600 * 119.87634 * 100.98236 * 12 9 8 26 26 H 1.08999 * 109.46826 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47481 * 299.99233 * 1 2 3 28 28 H 1.09005 * 109.47158 * 59.99915 * 1 2 3 29 29 H 1.09007 * 109.47176 * 240.00752 * 2 1 3 30 30 H 1.08996 * 109.47705 * 120.00193 * 2 1 3 31 31 H 1.09002 * 109.47085 * 184.97407 * 4 3 2 32 32 H 1.09000 * 109.47082 * 304.96641 * 4 3 2 33 33 H 1.08993 * 109.47412 * 300.00034 * 5 4 3 34 34 H 1.08999 * 109.47078 * 60.00346 * 5 4 3 35 35 H 1.09002 * 109.46964 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.47025 * 59.09476 * 6 3 2 37 37 H 1.09001 * 109.46882 * 179.09026 * 6 3 2 38 38 H 1.08993 * 109.47353 * 60.00300 * 7 6 3 39 39 H 1.09008 * 109.46613 * 180.02562 * 7 6 3 40 40 H 1.08997 * 109.47058 * 299.99534 * 7 6 3 41 41 H 0.96999 * 119.99474 * 8.00376 * 8 3 2 42 42 H 1.08004 * 119.74446 * 0.02562 * 13 12 9 43 43 H 1.08001 * 119.87862 * 180.25307 * 14 13 12 44 44 H 1.07998 * 120.13272 * 179.74586 * 15 14 13 45 45 H 0.96996 * 119.99994 * 179.97438 * 20 19 17 46 46 H 1.07998 * 120.12829 * 359.97304 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1637 1.2494 5 6 2.1394 1.5182 2.4954 6 6 1.5299 2.1639 -1.2492 7 6 2.0585 1.4560 -2.4983 8 7 3.5049 1.4427 0.0006 9 16 4.3328 2.8619 0.2071 10 8 3.8332 3.4478 1.4014 11 8 5.7063 2.5582 0.0059 12 6 3.8628 3.9359 -1.1083 13 6 4.4285 3.7783 -2.3643 14 6 4.0640 4.6122 -3.4098 15 6 3.1430 5.6149 -3.2082 16 6 2.5666 5.7879 -1.9363 17 6 1.6189 6.8142 -1.7175 18 1 1.5047 7.2426 -0.7327 19 6 0.8291 7.2748 -2.7769 20 7 0.7969 6.6128 -3.9049 21 14 -0.1792 8.8350 -2.5806 22 1 0.6318 10.0050 -3.0034 23 1 -1.3977 8.7464 -3.4247 24 1 -0.5731 8.9941 -1.1576 25 6 2.9400 4.9316 -0.8838 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.8186 3.2139 1.2060 32 1 0.4436 2.0872 1.2950 33 1 1.8507 0.4681 2.5388 34 1 3.2258 1.5948 2.4498 35 1 1.7757 2.0317 3.3854 36 1 0.4400 2.1498 -1.2573 37 1 1.8799 3.1961 -1.2410 38 1 1.7085 0.4238 -2.5065 39 1 1.6954 1.9702 -3.3883 40 1 3.1483 1.4701 -2.4901 41 1 3.9900 0.6108 -0.1160 42 1 5.1552 2.9968 -2.5305 43 1 4.5081 4.4778 -4.3851 44 1 2.8634 6.2662 -4.0231 45 1 0.2492 6.9319 -4.6391 46 1 2.5035 5.0552 0.0963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619486560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:11 Heat of formation + Delta-G solvation = -67.343649 kcal Electronic energy + Delta-G solvation = -27968.667747 eV Core-core repulsion = 24370.668555 eV Total energy + Delta-G solvation = -3597.999192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.08958 -37.68502 -36.55707 -35.26969 -33.86156 -32.17680 -31.78435 -30.43913 -30.07491 -29.62605 -25.82301 -25.43691 -23.91233 -21.86078 -21.60382 -20.99596 -19.27845 -18.64753 -17.75863 -17.23888 -16.00852 -15.67921 -15.41182 -15.21461 -14.73090 -14.65220 -14.17732 -13.62175 -13.39534 -13.34459 -12.98556 -12.75625 -12.65037 -12.54369 -12.21999 -11.97240 -11.80661 -11.60905 -11.45108 -11.37446 -11.32820 -11.18048 -11.08113 -11.01117 -10.91535 -10.81373 -10.65456 -10.60996 -10.50167 -10.10303 -9.82202 -9.73703 -9.54143 -9.38946 -9.00298 -7.92010 -7.64656 -6.87825 -4.55111 1.10539 2.19762 2.61699 3.00411 3.03964 3.06387 3.60334 3.83737 4.26921 4.46341 4.82582 4.99468 5.06399 5.15506 5.33582 5.41115 5.46614 5.56126 5.70166 5.76491 5.82061 5.88551 5.96471 6.02253 6.03372 6.07199 6.13659 6.24984 6.33092 6.39147 6.40363 6.53841 6.59199 6.67085 6.73454 6.76283 6.82549 6.84074 6.97566 7.06238 7.19995 7.34686 7.37697 7.71774 7.82081 7.94327 8.40911 8.67976 8.71841 10.06258 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.005152 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.991925 B = 5433.440624 C = 5954.598008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.189 3.811 4 C -0.152 4.152 5 C -0.137 4.137 6 C -0.169 4.169 7 C -0.140 4.140 8 N -1.110 6.110 9 S 2.686 3.314 10 O -0.966 6.966 11 O -0.984 6.984 12 C -0.628 4.628 13 C -0.134 4.134 14 C -0.123 4.123 15 C -0.109 4.109 16 C 0.092 3.908 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.801 5.801 21 Si 0.912 3.088 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.125 4.125 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.410 0.590 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.127 0.873 45 H 0.282 0.718 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 -10.087 3.481 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.101 3.899 4 C -0.190 4.190 5 C -0.194 4.194 6 C -0.207 4.207 7 C -0.197 4.197 8 N -0.867 5.867 9 S 2.782 3.218 10 O -0.956 6.956 11 O -0.974 6.974 12 C -0.720 4.720 13 C -0.156 4.156 14 C -0.143 4.143 15 C -0.129 4.129 16 C 0.089 3.911 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.143 4.143 20 N -0.427 5.427 21 Si 0.736 3.264 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.146 4.146 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.243 0.757 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.145 0.855 45 H 0.093 0.907 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.301 -9.750 3.984 10.613 hybrid contribution -0.698 0.488 -0.910 1.246 sum -1.999 -9.263 3.074 9.962 Atomic orbital electron populations 1.21888 0.95170 1.01395 1.02737 1.21765 0.96497 0.95359 1.02282 1.20193 0.78070 0.96386 0.95223 1.22313 1.00808 1.02200 0.93676 1.21679 1.01652 0.98918 0.97200 1.22566 1.01370 1.03269 0.93476 1.21668 1.01445 0.98956 0.97676 1.55565 1.15099 1.24700 1.91332 1.01723 0.72351 0.72991 0.74755 1.93533 1.80350 1.77180 1.44510 1.93517 1.32192 1.84423 1.87264 1.29695 1.12306 1.15865 1.14094 1.19983 1.01851 1.01857 0.91861 1.20794 0.99103 0.97336 0.97019 1.21717 0.94718 0.97673 0.98816 1.17668 0.91059 0.91274 0.91124 1.19608 1.16419 1.16345 0.96573 0.90064 1.25888 0.96458 0.97513 0.94445 1.69741 1.33374 1.35698 1.03890 0.86238 0.79014 0.81469 0.79646 1.19281 1.20248 1.18489 1.20762 0.98978 0.95224 0.99685 0.92994 0.92085 0.91887 0.91252 0.91456 0.88872 0.90850 0.93751 0.92412 0.93122 0.91024 0.87608 0.93731 0.92792 0.92572 0.75683 0.88152 0.88559 0.85538 0.90733 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.22 37.16 0.34 -1.23 16 2 C -0.12 -1.32 4.54 -26.73 -0.12 -1.44 16 3 C 0.19 2.61 0.31 -131.82 -0.04 2.57 16 4 C -0.15 -2.21 4.14 -26.73 -0.11 -2.32 16 5 C -0.14 -1.87 8.90 37.15 0.33 -1.54 16 6 C -0.17 -2.67 4.18 -26.73 -0.11 -2.78 16 7 C -0.14 -2.11 9.16 37.16 0.34 -1.77 16 8 N -1.11 -15.92 3.89 0.54 0.00 -15.92 16 9 S 2.69 49.48 5.40 -107.50 -0.58 48.90 16 10 O -0.97 -19.11 12.02 -57.18 -0.69 -19.80 16 11 O -0.98 -20.30 17.58 -57.18 -1.01 -21.30 16 12 C -0.63 -13.00 3.79 -39.66 -0.15 -13.15 16 13 C -0.13 -2.78 8.26 -39.29 -0.32 -3.10 16 14 C -0.12 -2.65 10.02 -39.66 -0.40 -3.04 16 15 C -0.11 -2.61 8.67 -38.87 -0.34 -2.95 16 16 C 0.09 2.26 5.56 -106.82 -0.59 1.67 16 17 C -0.46 -11.39 9.07 -37.74 -0.34 -11.73 16 18 H 0.08 1.96 7.87 -52.49 -0.41 1.54 16 19 C 0.07 1.74 5.24 -17.34 -0.09 1.65 16 20 N -0.80 -19.24 10.80 55.55 0.60 -18.64 16 21 Si 0.91 17.86 29.58 -169.99 -5.03 12.83 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 C -0.13 -2.83 7.09 -38.87 -0.28 -3.10 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.61 6.32 -51.93 -0.33 0.29 16 28 H 0.06 0.68 6.41 -51.93 -0.33 0.35 16 29 H 0.07 0.72 6.45 -51.92 -0.33 0.39 16 30 H 0.07 0.68 6.56 -51.93 -0.34 0.34 16 31 H 0.09 1.60 5.49 -51.93 -0.28 1.32 16 32 H 0.07 0.95 6.18 -51.93 -0.32 0.63 16 33 H 0.04 0.50 6.56 -51.93 -0.34 0.16 16 34 H 0.06 0.85 5.90 -51.93 -0.31 0.55 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.08 6.38 -51.93 -0.33 0.75 16 37 H 0.11 2.00 3.36 -51.93 -0.17 1.82 16 38 H 0.04 0.56 6.45 -51.93 -0.33 0.23 16 39 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 40 H 0.06 0.85 6.48 -51.93 -0.34 0.52 16 41 H 0.41 4.84 8.62 -34.47 -0.30 4.54 16 42 H 0.10 1.90 7.87 -52.48 -0.41 1.49 16 43 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.13 3.12 6.15 -52.49 -0.32 2.80 16 45 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 46 H 0.11 2.52 6.86 -52.49 -0.36 2.16 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -27.79 349.44 -9.71 -37.50 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -6.40 Total: 13.45 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: -1.88 Total: -42.29 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.60 Total: -34.57 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -1.69 Total: -41.10 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 49.48 SS G_CDS: -0.58 Total: 48.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.79 -9.71 -37.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.839 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds