Wall clock time and date at job start Tue Mar 31 2020 14:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46907 * 2 1 4 4 C 1.53004 * 109.46608 * 60.00462 * 3 2 1 5 5 C 1.52994 * 109.47448 * 64.96904 * 4 3 2 6 6 C 1.52998 * 109.47409 * 300.00162 * 3 2 1 7 7 C 1.52995 * 109.46877 * 299.09308 * 6 3 2 8 8 N 1.46501 * 109.47277 * 179.97438 * 3 2 1 9 9 S 1.65599 * 120.00196 * 188.27233 * 8 3 2 10 10 O 1.42098 * 106.40190 * 53.64974 * 9 8 3 11 11 O 1.42093 * 106.40365 * 186.57118 * 9 8 3 12 12 C 1.76201 * 107.21544 * 300.11290 * 9 8 3 13 13 C 1.38655 * 119.87793 * 280.70141 * 12 9 8 14 14 C 1.38608 * 120.50418 * 179.72257 * 13 12 9 15 15 C 1.37640 * 120.24961 * 0.56115 * 14 13 12 16 16 C 1.40707 * 119.73987 * 359.71834 * 15 14 13 17 17 C 1.41393 * 120.24154 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99737 * 207.35260 * 17 16 15 19 19 C 1.39945 * 120.00208 * 27.34996 * 17 16 15 20 20 N 1.30830 * 120.00063 * 11.75526 * 19 17 16 21 21 Si 1.86795 * 120.00134 * 191.75294 * 19 17 16 22 22 H 1.48504 * 109.47093 * 89.99993 * 21 19 17 23 23 H 1.48499 * 109.47441 * 209.99994 * 21 19 17 24 24 H 1.48505 * 109.47214 * 330.00439 * 21 19 17 25 25 C 1.37600 * 119.87634 * 100.98236 * 12 9 8 26 26 H 1.08999 * 109.46826 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47481 * 299.99233 * 1 2 3 28 28 H 1.09005 * 109.47158 * 59.99915 * 1 2 3 29 29 H 1.09007 * 109.47176 * 240.00752 * 2 1 3 30 30 H 1.08996 * 109.47705 * 120.00193 * 2 1 3 31 31 H 1.09002 * 109.47085 * 184.97407 * 4 3 2 32 32 H 1.09000 * 109.47082 * 304.96641 * 4 3 2 33 33 H 1.08993 * 109.47412 * 300.00034 * 5 4 3 34 34 H 1.08999 * 109.47078 * 60.00346 * 5 4 3 35 35 H 1.09002 * 109.46964 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.47025 * 59.09476 * 6 3 2 37 37 H 1.09001 * 109.46882 * 179.09026 * 6 3 2 38 38 H 1.08993 * 109.47353 * 60.00300 * 7 6 3 39 39 H 1.09008 * 109.46613 * 180.02562 * 7 6 3 40 40 H 1.08997 * 109.47058 * 299.99534 * 7 6 3 41 41 H 0.96999 * 119.99474 * 8.00376 * 8 3 2 42 42 H 1.08004 * 119.74446 * 0.02562 * 13 12 9 43 43 H 1.08001 * 119.87862 * 180.25307 * 14 13 12 44 44 H 1.07998 * 120.13272 * 179.74586 * 15 14 13 45 45 H 0.96996 * 119.99994 * 179.97438 * 20 19 17 46 46 H 1.07998 * 120.12829 * 359.97304 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1637 1.2494 5 6 2.1394 1.5182 2.4954 6 6 1.5299 2.1639 -1.2492 7 6 2.0585 1.4560 -2.4983 8 7 3.5049 1.4427 0.0006 9 16 4.3328 2.8619 0.2071 10 8 3.8332 3.4478 1.4014 11 8 5.7063 2.5582 0.0059 12 6 3.8628 3.9359 -1.1083 13 6 4.4285 3.7783 -2.3643 14 6 4.0640 4.6122 -3.4098 15 6 3.1430 5.6149 -3.2082 16 6 2.5666 5.7879 -1.9363 17 6 1.6189 6.8142 -1.7175 18 1 1.5047 7.2426 -0.7327 19 6 0.8291 7.2748 -2.7769 20 7 0.7969 6.6128 -3.9049 21 14 -0.1792 8.8350 -2.5806 22 1 0.6318 10.0050 -3.0034 23 1 -1.3977 8.7464 -3.4247 24 1 -0.5731 8.9941 -1.1576 25 6 2.9400 4.9316 -0.8838 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.8186 3.2139 1.2060 32 1 0.4436 2.0872 1.2950 33 1 1.8507 0.4681 2.5388 34 1 3.2258 1.5948 2.4498 35 1 1.7757 2.0317 3.3854 36 1 0.4400 2.1498 -1.2573 37 1 1.8799 3.1961 -1.2410 38 1 1.7085 0.4238 -2.5065 39 1 1.6954 1.9702 -3.3883 40 1 3.1483 1.4701 -2.4901 41 1 3.9900 0.6108 -0.1160 42 1 5.1552 2.9968 -2.5305 43 1 4.5081 4.4778 -4.3851 44 1 2.8634 6.2662 -4.0231 45 1 0.2492 6.9319 -4.6391 46 1 2.5035 5.0552 0.0963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619486560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:10 Heat of formation + Delta-G solvation = -83.335890 kcal Electronic energy + Delta-G solvation = -27969.361223 eV Core-core repulsion = 24370.668555 eV Total energy + Delta-G solvation = -3598.692668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30649 -39.36461 -38.11214 -36.84777 -35.63317 -33.28107 -32.99568 -31.90619 -31.71274 -31.08774 -27.35755 -26.83847 -24.88053 -23.57127 -22.86082 -22.68149 -20.60026 -20.08745 -19.31569 -18.61431 -17.72521 -17.06711 -16.87967 -16.48585 -16.33465 -16.10835 -15.42303 -15.20135 -15.03671 -14.72229 -14.29151 -14.11195 -13.94297 -13.73712 -13.45392 -13.40767 -13.21997 -13.05650 -13.01998 -12.90307 -12.71024 -12.69102 -12.58189 -12.29975 -12.22946 -12.16564 -12.02686 -11.85698 -11.65458 -11.49653 -11.35625 -11.15186 -11.06960 -10.94969 -10.28349 -9.64012 -9.42355 -8.64485 -6.41642 -0.39912 0.46922 0.88539 1.38251 1.46376 1.50040 2.17788 2.19424 2.61464 2.84213 3.55402 3.59971 3.76605 3.99719 4.00596 4.27473 4.35791 4.42473 4.45023 4.56554 4.65302 4.66452 4.73974 4.82775 4.89944 4.94970 4.97930 4.99176 5.09155 5.13674 5.22507 5.23236 5.26007 5.38994 5.40769 5.42129 5.45093 5.50470 5.53714 5.59830 5.61571 5.82300 5.93650 6.00349 6.14903 6.28058 6.58212 6.85977 6.89827 8.31353 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.005152 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.991925 B = 5433.440624 C = 5954.598008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C 0.193 3.807 4 C -0.157 4.157 5 C -0.137 4.137 6 C -0.173 4.173 7 C -0.136 4.136 8 N -1.092 6.092 9 S 2.708 3.292 10 O -0.979 6.979 11 O -1.002 7.002 12 C -0.630 4.630 13 C -0.132 4.132 14 C -0.124 4.124 15 C -0.131 4.131 16 C 0.066 3.934 17 C -0.496 4.496 18 H 0.074 0.926 19 C 0.039 3.961 20 N -0.827 5.827 21 Si 0.978 3.022 22 H -0.264 1.264 23 H -0.267 1.267 24 H -0.261 1.261 25 C -0.129 4.129 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.053 0.947 41 H 0.426 0.574 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.288 0.712 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 -12.308 3.860 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.106 3.894 4 C -0.195 4.195 5 C -0.194 4.194 6 C -0.211 4.211 7 C -0.194 4.194 8 N -0.853 5.853 9 S 2.802 3.198 10 O -0.969 6.969 11 O -0.992 6.992 12 C -0.719 4.719 13 C -0.152 4.152 14 C -0.143 4.143 15 C -0.151 4.151 16 C 0.063 3.937 17 C -0.526 4.526 18 H 0.092 0.908 19 C -0.176 4.176 20 N -0.453 5.453 21 Si 0.799 3.201 22 H -0.189 1.189 23 H -0.192 1.192 24 H -0.185 1.185 25 C -0.150 4.150 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.263 0.737 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.130 0.870 45 H 0.099 0.901 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.641 -11.969 4.339 12.836 hybrid contribution -0.557 1.055 -0.992 1.552 sum -2.198 -10.914 3.347 11.625 Atomic orbital electron populations 1.21901 0.94451 1.02585 1.02313 1.21776 0.96989 0.92814 1.03775 1.20237 0.77176 0.98297 0.93737 1.22333 1.01944 1.00543 0.94695 1.21689 1.00639 1.00597 0.96523 1.22538 1.01733 1.01812 0.95029 1.21640 1.01178 1.00308 0.96233 1.55207 1.15453 1.23885 1.90786 1.01052 0.71799 0.73230 0.73741 1.93528 1.80508 1.78066 1.44796 1.93488 1.33631 1.84762 1.87301 1.30091 1.10996 1.15676 1.15139 1.20293 1.01602 1.01802 0.91524 1.21057 0.98295 0.96500 0.98483 1.21664 0.96198 0.98865 0.98324 1.17953 0.91654 0.92011 0.92076 1.19799 1.17946 1.17859 0.96999 0.90761 1.26606 0.97093 1.00032 0.93852 1.69788 1.34101 1.36916 1.04522 0.85254 0.77719 0.77600 0.79520 1.18871 1.19168 1.18507 1.20719 0.99591 0.95623 0.99036 0.90987 0.92093 0.92837 0.90013 0.89715 0.92085 0.89399 0.90891 0.93750 0.93220 0.90684 0.90884 0.90751 0.94993 0.92805 0.73680 0.85869 0.86139 0.86999 0.90093 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.22 71.98 0.66 -1.97 16 2 C -0.11 -2.08 4.54 30.59 0.14 -1.94 16 3 C 0.19 4.94 0.31 3.61 0.00 4.94 16 4 C -0.16 -4.39 4.14 30.59 0.13 -4.26 16 5 C -0.14 -3.46 8.90 71.98 0.64 -2.82 16 6 C -0.17 -5.34 4.18 30.59 0.13 -5.21 16 7 C -0.14 -3.91 9.16 71.98 0.66 -3.25 16 8 N -1.09 -29.05 3.89 -152.20 -0.59 -29.64 16 9 S 2.71 97.71 5.40 -56.49 -0.31 97.40 16 10 O -0.98 -38.76 12.02 -128.00 -1.54 -40.30 16 11 O -1.00 -39.89 17.58 -128.00 -2.25 -42.14 16 12 C -0.63 -26.25 3.79 22.22 0.08 -26.17 16 13 C -0.13 -5.37 8.26 22.46 0.19 -5.18 16 14 C -0.12 -5.37 10.02 22.22 0.22 -5.14 16 15 C -0.13 -6.47 8.67 22.73 0.20 -6.27 16 16 C 0.07 3.40 5.56 -21.29 -0.12 3.28 16 17 C -0.50 -25.81 9.07 23.46 0.21 -25.60 16 18 H 0.07 3.80 7.87 -2.91 -0.02 3.77 16 19 C 0.04 1.87 5.24 85.26 0.45 2.32 16 20 N -0.83 -40.96 10.80 21.83 0.24 -40.73 16 21 Si 0.98 37.30 29.58 68.60 2.03 39.33 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 23 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 25 C -0.13 -6.04 7.09 22.73 0.16 -5.88 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.04 6.32 -2.39 -0.02 1.03 16 28 H 0.05 1.02 6.41 -2.38 -0.02 1.00 16 29 H 0.08 1.32 6.45 -2.38 -0.02 1.31 16 30 H 0.08 1.30 6.56 -2.39 -0.02 1.28 16 31 H 0.06 2.13 5.49 -2.39 -0.01 2.11 16 32 H 0.09 2.17 6.18 -2.39 -0.01 2.15 16 33 H 0.07 1.40 6.56 -2.39 -0.02 1.38 16 34 H 0.04 1.23 5.90 -2.39 -0.01 1.21 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 2.23 6.38 -2.39 -0.02 2.22 16 37 H 0.07 2.81 3.36 -2.39 -0.01 2.80 16 38 H 0.07 1.66 6.45 -2.39 -0.02 1.64 16 39 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.05 1.54 6.48 -2.39 -0.02 1.52 16 41 H 0.43 8.69 8.62 -96.75 -0.83 7.85 16 42 H 0.12 4.43 7.87 -2.91 -0.02 4.41 16 43 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.11 5.78 6.15 -2.91 -0.02 5.77 16 45 H 0.29 12.97 8.30 -92.71 -0.77 12.21 16 46 H 0.11 5.09 6.86 -2.91 -0.02 5.07 16 Total: -1.00 -61.57 349.44 1.51 -60.07 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: 0.18 Total: 39.17 kcal Atomic # 6 Polarization: -86.91 SS G_CDS: 3.75 Total: -83.16 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -0.36 Total: -70.37 kcal Atomic # 8 Polarization: -78.65 SS G_CDS: -3.79 Total: -82.44 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Atomic # 16 Polarization: 97.71 SS G_CDS: -0.31 Total: 97.40 kcal Total: -61.57 1.51 -60.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.269 kcal (2) G-P(sol) polarization free energy of solvation -61.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds