Wall clock time and date at job start Tue Mar 31 2020 14:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 C 1.53003 * 109.47208 * 120.00447 * 2 1 3 5 5 N 1.46500 * 109.46878 * 295.11079 * 4 2 1 6 6 S 1.65597 * 119.99817 * 114.75357 * 5 4 2 7 7 O 1.42098 * 106.40442 * 309.77787 * 6 5 4 8 8 O 1.42101 * 106.40408 * 176.85642 * 6 5 4 9 9 C 1.76200 * 107.21686 * 63.31916 * 6 5 4 10 10 C 1.38657 * 119.87591 * 270.24674 * 9 6 5 11 11 C 1.38615 * 120.50372 * 180.30171 * 10 9 6 12 12 C 1.37644 * 120.24503 * 359.44703 * 11 10 9 13 13 C 1.40701 * 119.74383 * 0.27587 * 12 11 10 14 14 C 1.41394 * 120.24440 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00090 * 206.41044 * 14 13 12 16 16 C 1.39947 * 119.99694 * 26.40313 * 14 13 12 17 17 N 1.30825 * 120.00201 * 14.88513 * 16 14 13 18 18 Si 1.86798 * 119.99846 * 194.88454 * 16 14 13 19 19 H 1.48500 * 109.47411 * 59.99963 * 18 16 14 20 20 H 1.48504 * 109.47303 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47348 * 300.00100 * 18 16 14 22 22 C 1.37594 * 119.87814 * 90.00150 * 9 6 5 23 23 C 1.53001 * 109.47140 * 175.11523 * 4 2 1 24 24 C 1.52993 * 109.47031 * 180.02562 * 23 4 2 25 25 C 1.53005 * 109.46748 * 299.99520 * 23 4 2 26 26 H 1.08999 * 109.47155 * 66.11183 * 1 2 3 27 27 H 1.09000 * 109.47082 * 186.11339 * 1 2 3 28 28 H 1.09003 * 109.47089 * 306.11042 * 1 2 3 29 29 H 1.09001 * 109.47137 * 240.00357 * 2 1 3 30 30 H 1.09006 * 109.46985 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47449 * 300.00051 * 3 2 1 32 32 H 1.09001 * 109.46825 * 60.00166 * 3 2 1 33 33 H 1.09001 * 109.47114 * 55.11207 * 4 2 1 34 34 H 0.97005 * 120.00208 * 294.75992 * 5 4 2 35 35 H 1.07999 * 119.75152 * 0.04791 * 10 9 6 36 36 H 1.07997 * 119.87882 * 179.72923 * 11 10 9 37 37 H 1.07992 * 120.12516 * 180.25215 * 12 11 10 38 38 H 0.96996 * 119.99884 * 179.97438 * 17 16 14 39 39 H 1.08004 * 120.12945 * 359.97438 * 22 9 6 40 40 H 1.08994 * 109.47296 * 59.99161 * 23 4 2 41 41 H 1.08998 * 109.47481 * 179.97438 * 24 23 4 42 42 H 1.09004 * 109.46718 * 299.99268 * 24 23 4 43 43 H 1.09002 * 109.47736 * 59.99782 * 24 23 4 44 44 H 1.09003 * 109.47096 * 60.00300 * 25 23 4 45 45 H 1.09000 * 109.46903 * 179.97438 * 25 23 4 46 46 H 1.09001 * 109.47447 * 300.00280 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6502 0.0338 2.4425 6 16 0.5868 -0.6243 3.5280 7 8 -0.5265 -1.0813 2.7725 8 8 0.4726 0.3085 4.5939 9 6 1.3529 -2.0601 4.2035 10 6 1.1768 -3.2907 3.5893 11 6 1.7683 -4.4296 4.1131 12 6 2.5476 -4.3482 5.2448 13 6 2.7380 -3.1038 5.8732 14 6 3.5360 -3.0081 7.0365 15 1 3.3605 -2.2148 7.7480 16 6 4.5532 -3.9414 7.2659 17 7 4.9627 -4.7150 6.2935 18 14 5.3264 -4.0827 8.9604 19 1 4.2813 -4.4398 9.9532 20 1 6.3722 -5.1368 8.9411 21 1 5.9407 -2.7834 9.3342 22 6 2.1277 -1.9552 5.3357 23 6 3.5651 -0.8286 1.1893 24 6 4.0750 -1.5505 2.4381 25 6 3.9722 -1.6173 -0.0570 26 1 -0.3633 0.4162 -0.9396 27 1 -0.3633 -1.0218 0.1094 28 1 -0.3633 0.6057 0.8303 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6070 -1.7206 1.2940 34 1 2.0148 0.9194 2.5967 35 1 0.5708 -3.3631 2.6983 36 1 1.6208 -5.3836 3.6290 37 1 3.0108 -5.2360 5.6489 38 1 5.6680 -5.3616 6.4524 39 1 2.2672 -0.9950 5.8101 40 1 3.9981 0.1706 1.1444 41 1 5.1614 -1.6273 2.3953 42 1 3.7849 -0.9889 3.3262 43 1 3.6420 -2.5498 2.4825 44 1 3.6089 -1.1034 -0.9470 45 1 5.0587 -1.6933 -0.1000 46 1 3.5392 -2.6166 -0.0122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619492117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:14 Heat of formation + Delta-G solvation = -84.553665 kcal Electronic energy + Delta-G solvation = -27354.809720 eV Core-core repulsion = 23756.064246 eV Total energy + Delta-G solvation = -3598.745474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.75652 -37.63839 -36.56356 -35.25485 -33.85831 -33.45907 -32.30214 -30.06639 -29.78615 -27.14178 -26.75755 -25.57823 -25.39410 -21.88161 -21.00221 -20.87165 -19.42621 -19.05696 -17.91514 -16.93408 -16.02124 -15.93806 -15.34323 -14.97342 -14.75797 -14.60264 -14.42262 -13.87474 -13.47749 -13.32252 -13.00661 -12.64338 -12.57279 -12.26148 -12.09054 -12.02308 -11.79572 -11.76793 -11.53581 -11.48576 -11.37974 -11.34278 -11.16163 -11.10713 -10.92895 -10.90995 -10.82751 -10.71842 -10.61031 -10.46726 -10.14984 -9.75413 -9.57340 -9.35829 -9.00515 -8.01134 -7.66872 -6.89843 -4.53658 1.08743 2.21382 2.64591 2.99589 3.02235 3.07980 3.61857 3.83555 4.28059 4.46839 4.69401 4.90036 4.94796 5.10374 5.18493 5.34153 5.39870 5.43049 5.56661 5.64845 5.68422 5.77070 5.96280 5.99032 6.02422 6.05710 6.07147 6.14477 6.18225 6.20320 6.25452 6.37596 6.43327 6.54240 6.65559 6.66746 6.77128 6.85918 6.89533 7.04508 7.21883 7.31057 7.39032 7.73051 7.82126 7.95223 8.41183 8.68286 8.72792 10.05215 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017246 B = 0.004343 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.146564 B = 6446.207413 C = 7002.785380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.148 4.148 4 C 0.167 3.833 5 N -1.111 6.111 6 S 2.683 3.317 7 O -0.972 6.972 8 O -0.978 6.978 9 C -0.628 4.628 10 C -0.144 4.144 11 C -0.121 4.121 12 C -0.114 4.114 13 C 0.095 3.905 14 C -0.462 4.462 15 H 0.081 0.919 16 C 0.076 3.924 17 N -0.797 5.797 18 Si 0.911 3.089 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.119 4.119 23 C -0.104 4.104 24 C -0.147 4.147 25 C -0.148 4.148 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.411 0.589 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.283 0.717 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 5.497 -11.019 12.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.205 4.205 4 C 0.059 3.941 5 N -0.868 5.868 6 S 2.779 3.221 7 O -0.962 6.962 8 O -0.968 6.968 9 C -0.720 4.720 10 C -0.166 4.166 11 C -0.141 4.141 12 C -0.134 4.134 13 C 0.091 3.909 14 C -0.491 4.491 15 H 0.099 0.901 16 C -0.142 4.142 17 N -0.423 5.423 18 Si 0.735 3.265 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.141 4.141 23 C -0.124 4.124 24 C -0.205 4.205 25 C -0.206 4.206 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.246 0.754 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.084 5.497 -10.907 12.262 hybrid contribution 1.278 -0.352 0.957 1.635 sum 0.194 5.144 -9.950 11.203 Atomic orbital electron populations 1.21845 0.94481 1.03006 1.01018 1.21551 0.96528 0.96733 0.97971 1.21854 1.00961 0.96089 1.01618 1.20845 0.94646 0.94743 0.83819 1.55610 1.66541 1.28579 1.36096 1.01808 0.73602 0.74177 0.72495 1.93523 1.48746 1.82474 1.71433 1.93531 1.86112 1.62621 1.54574 1.29705 1.17538 1.15226 1.09519 1.20043 1.03825 0.91937 1.00748 1.20792 0.99046 0.96579 0.97667 1.21629 0.97563 0.98329 0.95870 1.17641 0.90481 0.90495 0.92278 1.19576 1.13078 1.11258 1.05219 0.90125 1.25887 0.96017 0.93943 0.98347 1.69750 1.23162 1.17301 1.32081 0.86313 0.78994 0.78974 0.82199 1.18757 1.20289 1.18898 1.20752 1.00067 0.98284 0.94962 1.21497 0.94646 1.00027 0.96229 1.21865 1.00362 1.01507 0.96738 1.21892 1.01272 1.00408 0.96983 0.93364 0.91733 0.92572 0.90086 0.92433 0.93001 0.92510 0.89119 0.75447 0.87814 0.88579 0.85837 0.90647 0.87302 0.90914 0.93275 0.91938 0.91633 0.92572 0.92646 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.17 37.16 0.30 -1.48 16 2 C -0.11 -1.18 2.52 -90.62 -0.23 -1.40 16 3 C -0.15 -1.41 8.63 37.16 0.32 -1.09 16 4 C 0.17 2.15 1.53 -67.93 -0.10 2.04 16 5 N -1.11 -15.69 3.77 -4.89 -0.02 -15.71 16 6 S 2.68 49.23 5.57 -107.50 -0.60 48.63 16 7 O -0.97 -18.93 15.57 -57.17 -0.89 -19.82 16 8 O -0.98 -20.55 17.27 -57.17 -0.99 -21.54 16 9 C -0.63 -13.09 5.00 -39.66 -0.20 -13.29 16 10 C -0.14 -2.97 8.72 -39.29 -0.34 -3.31 16 11 C -0.12 -2.61 10.02 -39.66 -0.40 -3.01 16 12 C -0.11 -2.74 8.68 -38.87 -0.34 -3.08 16 13 C 0.09 2.36 5.56 -106.82 -0.59 1.76 16 14 C -0.46 -11.63 9.06 -37.74 -0.34 -11.97 16 15 H 0.08 1.97 7.89 -52.49 -0.41 1.56 16 16 C 0.08 1.80 5.19 -17.34 -0.09 1.71 16 17 N -0.80 -19.30 10.91 55.55 0.61 -18.69 16 18 Si 0.91 17.97 29.58 -169.99 -5.03 12.94 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 22 C -0.12 -2.76 8.77 -38.87 -0.34 -3.10 16 23 C -0.10 -1.27 2.45 -90.62 -0.22 -1.49 16 24 C -0.15 -2.30 8.48 37.15 0.31 -1.99 16 25 C -0.15 -1.58 8.85 37.16 0.33 -1.25 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.86 8.01 -51.93 -0.42 0.45 16 28 H 0.06 0.75 7.49 -51.93 -0.39 0.36 16 29 H 0.08 0.78 6.18 -51.93 -0.32 0.46 16 30 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.55 6.87 -51.93 -0.36 0.20 16 33 H 0.09 1.28 7.41 -51.93 -0.38 0.89 16 34 H 0.41 4.97 7.75 -34.47 -0.27 4.70 16 35 H 0.10 1.94 7.59 -52.49 -0.40 1.54 16 36 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.12 3.06 6.19 -52.49 -0.33 2.74 16 38 H 0.28 6.27 8.30 -40.82 -0.34 5.94 16 39 H 0.11 2.47 7.60 -52.48 -0.40 2.07 16 40 H 0.07 0.81 6.56 -51.93 -0.34 0.46 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.06 6.75 -51.93 -0.35 0.71 16 43 H 0.06 1.15 7.71 -51.93 -0.40 0.75 16 44 H 0.06 0.51 6.32 -51.93 -0.33 0.18 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -28.34 369.55 -10.38 -38.72 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.10 Total: 10.86 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: -1.93 Total: -40.95 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.59 Total: -34.40 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.88 Total: -41.36 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 49.23 SS G_CDS: -0.60 Total: 48.63 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.34 -10.38 -38.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619492117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.835 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds