Wall clock time and date at job start Tue Mar 31 2020 14:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 C 1.53003 * 109.47208 * 120.00447 * 2 1 3 5 5 N 1.46500 * 109.46878 * 295.11079 * 4 2 1 6 6 S 1.65597 * 119.99817 * 114.75357 * 5 4 2 7 7 O 1.42098 * 106.40442 * 309.77787 * 6 5 4 8 8 O 1.42101 * 106.40408 * 176.85642 * 6 5 4 9 9 C 1.76200 * 107.21686 * 63.31916 * 6 5 4 10 10 C 1.38657 * 119.87591 * 270.24674 * 9 6 5 11 11 C 1.38615 * 120.50372 * 180.30171 * 10 9 6 12 12 C 1.37644 * 120.24503 * 359.44703 * 11 10 9 13 13 C 1.40701 * 119.74383 * 0.27587 * 12 11 10 14 14 C 1.41394 * 120.24440 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00090 * 206.41044 * 14 13 12 16 16 C 1.39947 * 119.99694 * 26.40313 * 14 13 12 17 17 N 1.30825 * 120.00201 * 14.88513 * 16 14 13 18 18 Si 1.86798 * 119.99846 * 194.88454 * 16 14 13 19 19 H 1.48500 * 109.47411 * 59.99963 * 18 16 14 20 20 H 1.48504 * 109.47303 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47348 * 300.00100 * 18 16 14 22 22 C 1.37594 * 119.87814 * 90.00150 * 9 6 5 23 23 C 1.53001 * 109.47140 * 175.11523 * 4 2 1 24 24 C 1.52993 * 109.47031 * 180.02562 * 23 4 2 25 25 C 1.53005 * 109.46748 * 299.99520 * 23 4 2 26 26 H 1.08999 * 109.47155 * 66.11183 * 1 2 3 27 27 H 1.09000 * 109.47082 * 186.11339 * 1 2 3 28 28 H 1.09003 * 109.47089 * 306.11042 * 1 2 3 29 29 H 1.09001 * 109.47137 * 240.00357 * 2 1 3 30 30 H 1.09006 * 109.46985 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47449 * 300.00051 * 3 2 1 32 32 H 1.09001 * 109.46825 * 60.00166 * 3 2 1 33 33 H 1.09001 * 109.47114 * 55.11207 * 4 2 1 34 34 H 0.97005 * 120.00208 * 294.75992 * 5 4 2 35 35 H 1.07999 * 119.75152 * 0.04791 * 10 9 6 36 36 H 1.07997 * 119.87882 * 179.72923 * 11 10 9 37 37 H 1.07992 * 120.12516 * 180.25215 * 12 11 10 38 38 H 0.96996 * 119.99884 * 179.97438 * 17 16 14 39 39 H 1.08004 * 120.12945 * 359.97438 * 22 9 6 40 40 H 1.08994 * 109.47296 * 59.99161 * 23 4 2 41 41 H 1.08998 * 109.47481 * 179.97438 * 24 23 4 42 42 H 1.09004 * 109.46718 * 299.99268 * 24 23 4 43 43 H 1.09002 * 109.47736 * 59.99782 * 24 23 4 44 44 H 1.09003 * 109.47096 * 60.00300 * 25 23 4 45 45 H 1.09000 * 109.46903 * 179.97438 * 25 23 4 46 46 H 1.09001 * 109.47447 * 300.00280 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6502 0.0338 2.4425 6 16 0.5868 -0.6243 3.5280 7 8 -0.5265 -1.0813 2.7725 8 8 0.4726 0.3085 4.5939 9 6 1.3529 -2.0601 4.2035 10 6 1.1768 -3.2907 3.5893 11 6 1.7683 -4.4296 4.1131 12 6 2.5476 -4.3482 5.2448 13 6 2.7380 -3.1038 5.8732 14 6 3.5360 -3.0081 7.0365 15 1 3.3605 -2.2148 7.7480 16 6 4.5532 -3.9414 7.2659 17 7 4.9627 -4.7150 6.2935 18 14 5.3264 -4.0827 8.9604 19 1 4.2813 -4.4398 9.9532 20 1 6.3722 -5.1368 8.9411 21 1 5.9407 -2.7834 9.3342 22 6 2.1277 -1.9552 5.3357 23 6 3.5651 -0.8286 1.1893 24 6 4.0750 -1.5505 2.4381 25 6 3.9722 -1.6173 -0.0570 26 1 -0.3633 0.4162 -0.9396 27 1 -0.3633 -1.0218 0.1094 28 1 -0.3633 0.6057 0.8303 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6070 -1.7206 1.2940 34 1 2.0148 0.9194 2.5967 35 1 0.5708 -3.3631 2.6983 36 1 1.6208 -5.3836 3.6290 37 1 3.0108 -5.2360 5.6489 38 1 5.6680 -5.3616 6.4524 39 1 2.2672 -0.9950 5.8101 40 1 3.9981 0.1706 1.1444 41 1 5.1614 -1.6273 2.3953 42 1 3.7849 -0.9889 3.3262 43 1 3.6420 -2.5498 2.4825 44 1 3.6089 -1.1034 -0.9470 45 1 5.0587 -1.6933 -0.1000 46 1 3.5392 -2.6166 -0.0122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619492117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:13 Heat of formation + Delta-G solvation = -100.663187 kcal Electronic energy + Delta-G solvation = -27355.508282 eV Core-core repulsion = 23756.064246 eV Total energy + Delta-G solvation = -3599.444036 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83557 -39.37133 -38.15306 -36.85395 -35.63654 -34.46384 -33.44171 -31.87225 -31.54824 -28.03196 -27.79019 -27.31930 -26.51418 -23.62513 -22.77808 -21.87353 -20.57147 -20.44581 -19.56078 -18.39490 -17.69693 -17.24878 -16.87517 -16.54382 -16.17772 -15.84507 -15.53392 -15.20412 -15.03924 -14.89046 -14.28159 -14.04457 -13.71194 -13.60053 -13.37818 -13.26157 -13.15038 -13.06187 -13.00884 -12.99816 -12.90628 -12.79438 -12.68772 -12.57984 -12.26101 -12.16306 -12.11104 -11.89272 -11.74696 -11.53830 -11.44254 -11.22709 -11.15459 -11.08941 -10.20254 -9.77566 -9.48611 -8.68349 -6.42791 -0.42684 0.45894 0.88619 1.37171 1.46004 1.48748 2.18135 2.18760 2.59868 2.83638 3.51867 3.57970 3.68665 3.95892 4.07976 4.24894 4.28953 4.36008 4.46603 4.52424 4.55120 4.75169 4.81376 4.86713 4.88684 4.93347 4.93977 4.98058 5.09800 5.12135 5.17919 5.21840 5.22892 5.25170 5.33461 5.38688 5.44849 5.46202 5.59045 5.60341 5.61582 5.71391 5.92435 5.97643 6.13934 6.20455 6.56177 6.83726 6.88543 8.28533 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017246 B = 0.004343 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.146564 B = 6446.207413 C = 7002.785380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.149 4.149 4 C 0.160 3.840 5 N -1.096 6.096 6 S 2.709 3.291 7 O -0.978 6.978 8 O -1.004 7.004 9 C -0.631 4.631 10 C -0.137 4.137 11 C -0.122 4.122 12 C -0.134 4.134 13 C 0.069 3.931 14 C -0.501 4.501 15 H 0.074 0.926 16 C 0.041 3.959 17 N -0.823 5.823 18 Si 0.978 3.022 19 H -0.263 1.263 20 H -0.265 1.265 21 H -0.262 1.262 22 C -0.135 4.135 23 C -0.095 4.095 24 C -0.146 4.146 25 C -0.146 4.146 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.424 0.576 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.290 0.710 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 6.247 -13.056 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.206 4.206 4 C 0.053 3.947 5 N -0.857 5.857 6 S 2.802 3.198 7 O -0.968 6.968 8 O -0.995 6.995 9 C -0.720 4.720 10 C -0.158 4.158 11 C -0.141 4.141 12 C -0.154 4.154 13 C 0.066 3.934 14 C -0.530 4.530 15 H 0.092 0.908 16 C -0.175 4.175 17 N -0.448 5.448 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.186 1.186 22 C -0.156 4.156 23 C -0.115 4.115 24 C -0.203 4.203 25 C -0.204 4.204 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.261 0.739 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.758 6.229 -12.942 14.383 hybrid contribution 1.112 -0.553 1.444 1.904 sum 0.354 5.676 -11.498 12.828 Atomic orbital electron populations 1.21880 0.95468 1.01887 1.01499 1.21538 0.95605 0.97718 0.97225 1.21879 1.01697 0.94927 1.02146 1.21079 0.95135 0.94419 0.84028 1.55261 1.66085 1.28934 1.35445 1.01054 0.73592 0.73005 0.72183 1.93514 1.49375 1.82579 1.71337 1.93492 1.86695 1.62920 1.56358 1.30133 1.16238 1.16965 1.08645 1.20370 1.02993 0.91468 1.00980 1.21087 0.98030 0.98212 0.96805 1.21599 0.98925 0.97634 0.97227 1.17935 0.91177 0.91439 0.92872 1.19790 1.14697 1.12549 1.05995 0.90788 1.26618 0.95931 0.93139 1.01779 1.69791 1.23650 1.17713 1.33689 0.85308 0.78195 0.79182 0.77428 1.18739 1.18966 1.18605 1.20747 1.01217 0.97622 0.96027 1.21451 0.93983 1.00806 0.95240 1.21828 1.00297 1.00238 0.97944 1.21892 1.01658 0.99991 0.96839 0.91328 0.93225 0.94143 0.87960 0.91297 0.91578 0.93022 0.90334 0.73920 0.85420 0.85936 0.87168 0.89955 0.87924 0.88986 0.93318 0.93897 0.94133 0.90100 0.92189 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.17 71.98 0.59 -2.70 16 2 C -0.10 -1.87 2.52 -10.79 -0.03 -1.90 16 3 C -0.15 -2.30 8.63 71.98 0.62 -1.68 16 4 C 0.16 3.80 1.53 44.99 0.07 3.86 16 5 N -1.10 -29.64 3.77 -169.38 -0.64 -30.28 16 6 S 2.71 98.42 5.57 -56.49 -0.31 98.11 16 7 O -0.98 -37.12 15.57 -128.00 -1.99 -39.11 16 8 O -1.00 -42.36 17.27 -128.00 -2.21 -44.57 16 9 C -0.63 -26.59 5.00 22.22 0.11 -26.48 16 10 C -0.14 -5.61 8.72 22.46 0.20 -5.41 16 11 C -0.12 -5.28 10.02 22.22 0.22 -5.06 16 12 C -0.13 -6.67 8.68 22.73 0.20 -6.47 16 13 C 0.07 3.59 5.56 -21.29 -0.12 3.48 16 14 C -0.50 -26.40 9.06 23.46 0.21 -26.19 16 15 H 0.07 3.83 7.89 -2.91 -0.02 3.80 16 16 C 0.04 1.97 5.19 85.26 0.44 2.42 16 17 N -0.82 -40.88 10.91 21.83 0.24 -40.64 16 18 Si 0.98 37.38 29.58 68.60 2.03 39.41 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 20 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 22 C -0.13 -6.50 8.77 22.73 0.20 -6.30 16 23 C -0.09 -2.12 2.45 -10.79 -0.03 -2.14 16 24 C -0.15 -4.54 8.48 71.98 0.61 -3.93 16 25 C -0.15 -2.70 8.85 71.98 0.64 -2.06 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 1.23 8.01 -2.39 -0.02 1.21 16 28 H 0.04 1.00 7.49 -2.39 -0.02 0.98 16 29 H 0.10 1.52 6.18 -2.39 -0.01 1.51 16 30 H 0.07 0.92 6.56 -2.38 -0.02 0.91 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.85 6.87 -2.39 -0.02 0.84 16 33 H 0.08 2.08 7.41 -2.39 -0.02 2.07 16 34 H 0.42 9.60 7.75 -96.74 -0.75 8.85 16 35 H 0.13 4.57 7.59 -2.91 -0.02 4.55 16 36 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.11 5.70 6.19 -2.91 -0.02 5.68 16 38 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 39 H 0.10 4.93 7.60 -2.91 -0.02 4.90 16 40 H 0.09 1.74 6.56 -2.39 -0.02 1.73 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.04 1.48 6.75 -2.38 -0.02 1.46 16 43 H 0.04 1.44 7.71 -2.39 -0.02 1.42 16 44 H 0.08 1.11 6.32 -2.39 -0.02 1.10 16 45 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -62.74 369.55 1.28 -61.46 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: 0.23 Total: 36.19 kcal Atomic # 6 Polarization: -84.51 SS G_CDS: 3.93 Total: -80.57 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -0.40 Total: -70.92 kcal Atomic # 8 Polarization: -79.48 SS G_CDS: -4.20 Total: -83.68 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Atomic # 16 Polarization: 98.42 SS G_CDS: -0.31 Total: 98.11 kcal Total: -62.74 1.28 -61.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619492117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.199 kcal (2) G-P(sol) polarization free energy of solvation -62.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds