Wall clock time and date at job start Tue Mar 31 2020 14:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47186 * 2 1 4 4 C 1.52996 * 109.47198 * 120.00303 * 2 1 3 5 5 C 1.52996 * 109.47299 * 59.99767 * 4 2 1 6 6 C 1.53005 * 109.47012 * 299.99813 * 4 2 1 7 7 C 1.53002 * 109.47194 * 180.02562 * 4 2 1 8 8 N 1.46505 * 109.47278 * 179.97438 * 7 4 2 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 4 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.08998 * 109.47431 * 299.99910 * 1 2 3 27 27 H 1.09003 * 109.47261 * 60.00015 * 1 2 3 28 28 H 1.09006 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47431 * 240.00090 * 2 1 3 30 30 H 1.09004 * 109.47218 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47524 * 300.00103 * 3 2 1 32 32 H 1.09003 * 109.47257 * 60.00001 * 3 2 1 33 33 H 1.09003 * 109.47008 * 180.02562 * 5 4 2 34 34 H 1.08992 * 109.47357 * 299.99838 * 5 4 2 35 35 H 1.08998 * 109.46863 * 60.00499 * 5 4 2 36 36 H 1.08997 * 109.47184 * 300.00334 * 6 4 2 37 37 H 1.09004 * 109.46771 * 59.99965 * 6 4 2 38 38 H 1.09003 * 109.47240 * 180.02562 * 6 4 2 39 39 H 1.08997 * 109.47200 * 59.99545 * 7 4 2 40 40 H 1.09003 * 109.46759 * 299.99391 * 7 4 2 41 41 H 0.97007 * 119.99457 * 345.00054 * 8 7 4 42 42 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 43 43 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 44 44 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 45 45 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 46 46 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 1.5300 0.0000 2.4985 7 6 3.5700 -0.7207 1.2495 8 7 4.0584 -1.4109 2.4460 9 16 5.6405 -1.8912 2.5369 10 8 5.9254 -2.5667 1.3196 11 8 5.8051 -2.4901 3.8150 12 6 6.6290 -0.4327 2.5399 13 6 7.0701 0.1052 1.3403 14 6 7.8535 1.2486 1.3278 15 6 8.1930 1.8694 2.5084 16 6 7.7463 1.3359 3.7313 17 6 8.0892 1.9647 4.9503 18 1 8.1057 1.3934 5.8668 19 6 8.4073 3.3273 4.9695 20 7 8.0610 4.0940 3.9676 21 14 9.3264 4.0516 6.4256 22 1 9.6006 2.9825 7.4192 23 1 10.6102 4.6352 5.9600 24 1 8.4996 5.1125 7.0548 25 6 6.9562 0.1712 3.7322 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.8930 -2.6775 2.1394 34 1 0.4400 -2.1638 1.2492 35 1 1.8933 -2.6776 0.3592 36 1 1.8933 1.0276 2.4985 37 1 0.4399 0.0000 2.4984 38 1 1.8937 -0.5136 3.3885 39 1 3.9329 0.3070 1.2497 40 1 3.9336 -1.2344 0.3595 41 1 3.4548 -1.5865 3.1848 42 1 6.8045 -0.3728 0.4089 43 1 8.1952 1.6563 0.3879 44 1 8.8001 2.7625 2.4962 45 1 8.2813 5.0387 3.9810 46 1 6.6080 -0.2469 4.6651 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619498808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:17 Heat of formation + Delta-G solvation = -83.167401 kcal Electronic energy + Delta-G solvation = -26428.235279 eV Core-core repulsion = 22829.549918 eV Total energy + Delta-G solvation = -3598.685361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.19340 -37.63304 -36.61366 -35.26943 -34.32513 -33.84625 -30.82069 -30.07670 -29.77793 -28.09028 -27.14852 -25.51752 -25.32685 -22.23700 -21.88300 -20.98237 -19.14957 -18.32564 -17.93751 -17.00688 -16.01893 -15.91275 -15.37273 -15.13979 -14.79995 -14.55373 -14.46273 -14.24625 -13.62553 -13.45576 -13.34106 -13.00568 -12.58461 -12.50988 -12.24248 -12.05780 -11.90101 -11.86132 -11.61809 -11.58633 -11.48104 -11.38551 -11.37806 -11.30598 -11.17968 -10.98203 -10.89822 -10.59953 -10.49500 -10.37941 -10.36330 -9.76935 -9.62956 -9.36084 -9.04960 -8.03450 -7.70544 -6.93557 -4.53834 1.07601 2.20482 2.62441 2.99840 3.03850 3.06941 3.62662 3.82568 4.26497 4.43861 4.57938 4.61801 4.70523 5.05414 5.09591 5.22561 5.26245 5.39514 5.45885 5.56409 5.58000 5.63906 5.72416 5.79710 5.85363 5.89116 5.92999 5.96304 6.00006 6.05158 6.12568 6.16132 6.18511 6.30256 6.38091 6.47712 6.65743 6.76274 6.85599 7.02981 7.20973 7.28409 7.39039 7.72900 7.81147 7.94366 8.40392 8.66746 8.71821 10.01844 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.003823 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.561596 B = 7321.719154 C = 8134.175137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.157 4.157 4 C -0.065 4.065 5 C -0.144 4.144 6 C -0.148 4.148 7 C 0.127 3.873 8 N -1.119 6.119 9 S 2.689 3.311 10 O -0.976 6.976 11 O -0.975 6.975 12 C -0.631 4.631 13 C -0.149 4.149 14 C -0.121 4.121 15 C -0.119 4.119 16 C 0.091 3.909 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.910 3.090 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.123 4.123 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.412 0.588 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.282 0.718 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 -3.344 -5.664 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.214 4.214 4 C -0.066 4.066 5 C -0.202 4.202 6 C -0.205 4.205 7 C 0.000 4.000 8 N -0.878 5.878 9 S 2.785 3.215 10 O -0.966 6.966 11 O -0.966 6.966 12 C -0.723 4.723 13 C -0.170 4.170 14 C -0.140 4.140 15 C -0.139 4.139 16 C 0.088 3.912 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.734 3.266 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.145 4.145 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.247 0.753 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.142 0.858 45 H 0.093 0.907 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.034 -3.958 -5.853 13.955 hybrid contribution 0.331 1.278 0.894 1.594 sum -11.704 -2.680 -4.959 12.990 Atomic orbital electron populations 1.21939 0.95264 1.01718 1.01696 1.21084 0.95748 0.96336 0.97160 1.22015 1.01896 0.95692 1.01822 1.20722 0.93965 0.95949 0.95973 1.21933 1.00748 0.95183 1.02309 1.22001 1.00853 1.00998 0.96656 1.21404 0.94163 0.97478 0.86925 1.55573 1.29087 1.76493 1.26642 1.01615 0.72348 0.74604 0.72942 1.93505 1.83858 1.72260 1.47011 1.93532 1.85251 1.75914 1.41856 1.29751 1.19908 1.22341 1.00254 1.20077 1.04298 0.98270 0.94376 1.20803 0.99781 0.96041 0.97373 1.21631 1.00105 1.00461 0.91658 1.17685 0.89223 0.90698 0.93594 1.19654 1.40419 0.93882 0.94994 0.89892 1.25928 0.93551 0.97232 0.97539 1.69793 1.34404 1.06730 1.31002 0.86221 0.79671 0.79381 0.81308 1.18201 1.19592 1.19864 1.20778 1.00755 0.98604 0.94348 0.92343 0.92962 0.92497 0.90971 0.91818 0.92882 0.92148 0.92417 0.92350 0.92405 0.91723 0.92290 0.92549 0.90938 0.90538 0.75332 0.87661 0.88439 0.85780 0.90663 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.49 37.16 0.32 -0.87 16 2 C -0.08 -0.79 2.28 -90.63 -0.21 -0.99 16 3 C -0.16 -1.56 8.49 37.16 0.32 -1.25 16 4 C -0.06 -0.67 0.34 -154.51 -0.05 -0.72 16 5 C -0.14 -1.40 7.96 37.16 0.30 -1.10 16 6 C -0.15 -1.49 7.60 37.16 0.28 -1.21 16 7 C 0.13 1.65 4.76 -4.04 -0.02 1.63 16 8 N -1.12 -16.20 5.33 -10.61 -0.06 -16.26 16 9 S 2.69 50.49 5.73 -107.50 -0.62 49.88 16 10 O -0.98 -19.89 16.74 -57.17 -0.96 -20.85 16 11 O -0.98 -20.59 17.27 -57.17 -0.99 -21.58 16 12 C -0.63 -13.71 5.94 -39.66 -0.24 -13.94 16 13 C -0.15 -3.20 9.53 -39.29 -0.37 -3.58 16 14 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 15 C -0.12 -2.94 8.70 -38.87 -0.34 -3.28 16 16 C 0.09 2.35 5.58 -106.82 -0.60 1.76 16 17 C -0.46 -11.78 9.05 -37.75 -0.34 -12.13 16 18 H 0.08 2.06 7.91 -52.49 -0.41 1.64 16 19 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -19.46 10.95 55.55 0.61 -18.85 16 21 Si 0.91 17.99 29.60 -169.99 -5.03 12.95 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 25 C -0.12 -2.96 9.26 -38.87 -0.36 -3.32 16 26 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 33 H 0.06 0.57 7.20 -51.93 -0.37 0.20 16 34 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 37 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 38 H 0.06 0.57 6.60 -51.93 -0.34 0.23 16 39 H 0.07 1.00 6.43 -51.93 -0.33 0.66 16 40 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 41 H 0.41 5.14 6.47 -34.48 -0.22 4.91 16 42 H 0.11 2.04 7.61 -52.49 -0.40 1.64 16 43 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 44 H 0.12 3.13 6.15 -52.49 -0.32 2.80 16 45 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 46 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -29.69 367.71 -10.10 -39.79 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.80 Total: 9.73 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: -1.80 Total: -40.36 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.55 Total: -35.11 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -1.94 Total: -42.43 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 50.49 SS G_CDS: -0.62 Total: 49.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.69 -10.10 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619498808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.377 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds