Wall clock time and date at job start Tue Mar 31 2020 14:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47186 * 2 1 4 4 C 1.52996 * 109.47198 * 120.00303 * 2 1 3 5 5 C 1.52996 * 109.47299 * 59.99767 * 4 2 1 6 6 C 1.53005 * 109.47012 * 299.99813 * 4 2 1 7 7 C 1.53002 * 109.47194 * 180.02562 * 4 2 1 8 8 N 1.46505 * 109.47278 * 179.97438 * 7 4 2 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 4 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.08998 * 109.47431 * 299.99910 * 1 2 3 27 27 H 1.09003 * 109.47261 * 60.00015 * 1 2 3 28 28 H 1.09006 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47431 * 240.00090 * 2 1 3 30 30 H 1.09004 * 109.47218 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47524 * 300.00103 * 3 2 1 32 32 H 1.09003 * 109.47257 * 60.00001 * 3 2 1 33 33 H 1.09003 * 109.47008 * 180.02562 * 5 4 2 34 34 H 1.08992 * 109.47357 * 299.99838 * 5 4 2 35 35 H 1.08998 * 109.46863 * 60.00499 * 5 4 2 36 36 H 1.08997 * 109.47184 * 300.00334 * 6 4 2 37 37 H 1.09004 * 109.46771 * 59.99965 * 6 4 2 38 38 H 1.09003 * 109.47240 * 180.02562 * 6 4 2 39 39 H 1.08997 * 109.47200 * 59.99545 * 7 4 2 40 40 H 1.09003 * 109.46759 * 299.99391 * 7 4 2 41 41 H 0.97007 * 119.99457 * 345.00054 * 8 7 4 42 42 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 43 43 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 44 44 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 45 45 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 46 46 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 1.5300 0.0000 2.4985 7 6 3.5700 -0.7207 1.2495 8 7 4.0584 -1.4109 2.4460 9 16 5.6405 -1.8912 2.5369 10 8 5.9254 -2.5667 1.3196 11 8 5.8051 -2.4901 3.8150 12 6 6.6290 -0.4327 2.5399 13 6 7.0701 0.1052 1.3403 14 6 7.8535 1.2486 1.3278 15 6 8.1930 1.8694 2.5084 16 6 7.7463 1.3359 3.7313 17 6 8.0892 1.9647 4.9503 18 1 8.1057 1.3934 5.8668 19 6 8.4073 3.3273 4.9695 20 7 8.0610 4.0940 3.9676 21 14 9.3264 4.0516 6.4256 22 1 9.6006 2.9825 7.4192 23 1 10.6102 4.6352 5.9600 24 1 8.4996 5.1125 7.0548 25 6 6.9562 0.1712 3.7322 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.8930 -2.6775 2.1394 34 1 0.4400 -2.1638 1.2492 35 1 1.8933 -2.6776 0.3592 36 1 1.8933 1.0276 2.4985 37 1 0.4399 0.0000 2.4984 38 1 1.8937 -0.5136 3.3885 39 1 3.9329 0.3070 1.2497 40 1 3.9336 -1.2344 0.3595 41 1 3.4548 -1.5865 3.1848 42 1 6.8045 -0.3728 0.4089 43 1 8.1952 1.6563 0.3879 44 1 8.8001 2.7625 2.4962 45 1 8.2813 5.0387 3.9810 46 1 6.6080 -0.2469 4.6651 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619498808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:16 Heat of formation + Delta-G solvation = -100.657361 kcal Electronic energy + Delta-G solvation = -26428.993701 eV Core-core repulsion = 22829.549918 eV Total energy + Delta-G solvation = -3599.443783 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.06397 -39.44295 -38.24058 -36.90475 -35.67905 -35.39917 -31.91745 -31.71216 -31.55156 -28.86033 -27.98434 -27.34987 -26.26930 -23.66475 -23.08681 -22.78124 -20.65189 -19.68317 -19.22883 -18.36497 -17.73709 -17.29808 -16.83132 -16.57973 -16.20964 -15.98509 -15.35987 -15.24207 -15.18494 -15.03766 -14.47305 -14.30749 -13.82987 -13.70737 -13.38426 -13.34551 -13.28644 -13.12994 -13.07751 -13.03880 -12.88498 -12.79807 -12.65175 -12.61546 -12.55194 -12.22466 -12.12752 -11.94451 -11.55455 -11.37758 -11.25642 -11.23348 -11.15251 -11.14174 -10.33341 -9.84731 -9.56344 -8.73959 -6.45628 -0.47066 0.40730 0.83884 1.36954 1.43964 1.51868 2.16071 2.17283 2.55199 2.79122 3.45002 3.52684 3.74632 3.83325 3.91583 4.27863 4.30974 4.39566 4.44505 4.47579 4.51845 4.72098 4.78746 4.83747 4.86790 4.88820 4.90245 4.95399 5.06297 5.08159 5.11957 5.14563 5.17484 5.20106 5.24726 5.28958 5.37589 5.40920 5.48544 5.56549 5.64323 5.69229 5.88588 5.93709 6.09648 6.13590 6.52342 6.79306 6.84447 8.24025 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.003823 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.561596 B = 7321.719154 C = 8134.175137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.158 4.158 4 C -0.059 4.059 5 C -0.146 4.146 6 C -0.150 4.150 7 C 0.118 3.882 8 N -1.102 6.102 9 S 2.719 3.281 10 O -0.986 6.986 11 O -0.998 6.998 12 C -0.637 4.637 13 C -0.147 4.147 14 C -0.122 4.122 15 C -0.141 4.141 16 C 0.063 3.937 17 C -0.499 4.499 18 H 0.077 0.923 19 C 0.040 3.960 20 N -0.820 5.820 21 Si 0.981 3.019 22 H -0.261 1.261 23 H -0.262 1.262 24 H -0.263 1.263 25 C -0.146 4.146 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.423 0.577 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.292 0.708 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.810 -3.507 -6.348 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.216 4.216 4 C -0.060 4.060 5 C -0.203 4.203 6 C -0.207 4.207 7 C -0.008 4.008 8 N -0.865 5.865 9 S 2.811 3.189 10 O -0.976 6.976 11 O -0.988 6.988 12 C -0.726 4.726 13 C -0.168 4.168 14 C -0.141 4.141 15 C -0.160 4.160 16 C 0.060 3.940 17 C -0.528 4.528 18 H 0.095 0.905 19 C -0.176 4.176 20 N -0.446 5.446 21 Si 0.802 3.198 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.188 1.188 25 C -0.167 4.167 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.261 0.739 42 H 0.149 0.851 43 H 0.144 0.856 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.403 -4.103 -6.543 15.469 hybrid contribution 0.665 1.280 0.992 1.750 sum -12.738 -2.824 -5.551 14.179 Atomic orbital electron populations 1.21913 0.93809 1.02416 1.02144 1.21082 0.96887 0.95556 0.96582 1.22025 1.00889 0.96460 1.02189 1.20705 0.91728 0.96893 0.96722 1.21963 1.01976 0.94254 1.02136 1.22031 1.02048 1.00255 0.96389 1.21641 0.96386 0.96733 0.86042 1.55219 1.27285 1.76281 1.27764 1.00760 0.72761 0.73315 0.72022 1.93488 1.84641 1.72088 1.47388 1.93496 1.86060 1.76183 1.43063 1.30245 1.19769 1.22982 0.99570 1.20453 1.03188 0.97841 0.95324 1.21136 0.99175 0.96009 0.97762 1.21634 1.01183 1.00802 0.92429 1.18032 0.89986 0.91698 0.94275 1.19875 1.42784 0.95136 0.94970 0.90484 1.26709 0.93630 0.96919 1.00359 1.69819 1.34736 1.07409 1.32599 0.85166 0.78506 0.78461 0.77686 1.18440 1.18671 1.18781 1.20847 1.01575 0.98981 0.95278 0.92180 0.92298 0.91644 0.90709 0.93381 0.91944 0.92401 0.92772 0.90521 0.92439 0.92781 0.90492 0.92799 0.91788 0.90329 0.73895 0.85106 0.85551 0.86903 0.89734 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.49 71.98 0.61 -1.31 16 2 C -0.08 -1.36 2.28 -10.80 -0.02 -1.39 16 3 C -0.16 -2.97 8.49 71.98 0.61 -2.36 16 4 C -0.06 -1.11 0.34 -52.18 -0.02 -1.13 16 5 C -0.15 -2.46 7.96 71.98 0.57 -1.89 16 6 C -0.15 -2.79 7.60 71.98 0.55 -2.24 16 7 C 0.12 2.93 4.76 86.38 0.41 3.34 16 8 N -1.10 -30.75 5.33 -187.48 -1.00 -31.75 16 9 S 2.72 100.19 5.73 -56.49 -0.32 99.87 16 10 O -0.99 -38.72 16.74 -128.00 -2.14 -40.87 16 11 O -1.00 -41.88 17.27 -128.00 -2.21 -44.09 16 12 C -0.64 -27.74 5.94 22.22 0.13 -27.61 16 13 C -0.15 -6.22 9.53 22.46 0.21 -6.01 16 14 C -0.12 -5.39 10.02 22.22 0.22 -5.16 16 15 C -0.14 -7.14 8.70 22.73 0.20 -6.94 16 16 C 0.06 3.38 5.58 -21.29 -0.12 3.26 16 17 C -0.50 -26.52 9.05 23.46 0.21 -26.30 16 18 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 19 C 0.04 1.93 5.14 85.25 0.44 2.37 16 20 N -0.82 -40.90 10.95 21.83 0.24 -40.66 16 21 Si 0.98 37.14 29.60 68.60 2.03 39.17 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 25 C -0.15 -7.20 9.26 22.73 0.21 -6.99 16 26 H 0.06 0.78 6.43 -2.39 -0.02 0.76 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.76 6.43 -2.38 -0.02 0.75 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.04 6.43 -2.38 -0.02 1.02 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.10 6.43 -2.39 -0.02 1.08 16 33 H 0.05 0.95 7.20 -2.39 -0.02 0.93 16 34 H 0.08 1.02 6.43 -2.39 -0.02 1.00 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.12 6.43 -2.39 -0.02 1.10 16 37 H 0.08 1.15 6.43 -2.38 -0.02 1.14 16 38 H 0.05 1.01 6.60 -2.39 -0.02 1.00 16 39 H 0.06 1.72 6.43 -2.39 -0.02 1.71 16 40 H 0.08 1.94 7.75 -2.39 -0.02 1.92 16 41 H 0.42 10.04 6.47 -96.74 -0.63 9.42 16 42 H 0.13 4.80 7.61 -2.91 -0.02 4.78 16 43 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 44 H 0.11 5.88 6.15 -2.91 -0.02 5.86 16 45 H 0.29 13.02 8.30 -92.70 -0.77 12.25 16 46 H 0.11 5.24 7.60 -2.91 -0.02 5.21 16 Total: -1.00 -64.04 367.71 1.18 -62.86 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: 0.36 Total: 35.83 kcal Atomic # 6 Polarization: -84.59 SS G_CDS: 4.22 Total: -80.37 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -0.76 Total: -72.41 kcal Atomic # 8 Polarization: -80.60 SS G_CDS: -4.35 Total: -84.95 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 16 Polarization: 100.19 SS G_CDS: -0.32 Total: 99.87 kcal Total: -64.04 1.18 -62.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619498808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.796 kcal (2) G-P(sol) polarization free energy of solvation -64.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds