Wall clock time and date at job start Tue Mar 31 2020 14:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46990 * 2 1 4 4 C 1.53000 * 109.47322 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47322 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46990 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46869 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46690 * 180.02562 * 7 6 5 9 9 S 1.65600 * 119.99765 * 164.72873 * 8 7 6 10 10 O 1.42094 * 106.40512 * 178.53760 * 9 8 7 11 11 O 1.42106 * 106.40226 * 311.45618 * 9 8 7 12 12 C 1.76198 * 107.22067 * 64.99582 * 9 8 7 13 13 C 1.38640 * 119.75037 * 269.72949 * 12 9 8 14 14 C 1.37618 * 120.24754 * 179.72238 * 13 12 9 15 15 C 1.40708 * 119.74303 * 0.56852 * 14 13 12 16 16 C 1.41395 * 120.24350 * 179.68190 * 15 14 13 17 17 H 1.07999 * 120.00421 * 204.40366 * 16 15 14 18 18 C 1.39948 * 120.00045 * 24.41232 * 16 15 14 19 19 N 1.30828 * 119.99938 * 17.83864 * 18 16 15 20 20 Si 1.86804 * 120.00206 * 197.84763 * 18 16 15 21 21 H 1.48497 * 109.46953 * 59.99362 * 20 18 16 22 22 H 1.48494 * 109.47057 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46965 * 299.99721 * 20 18 16 24 24 C 1.40718 * 119.51587 * 359.70656 * 15 14 13 25 25 C 1.37623 * 119.74191 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47183 * 299.99810 * 1 2 3 27 27 H 1.09002 * 109.47489 * 60.00143 * 1 2 3 28 28 H 1.09004 * 109.47057 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47189 * 239.99633 * 2 1 3 30 30 H 1.08999 * 109.46984 * 119.99835 * 2 1 3 31 31 H 1.08998 * 109.47455 * 59.99796 * 3 2 1 32 32 H 1.09002 * 109.46888 * 300.00225 * 3 2 1 33 33 H 1.08998 * 109.47171 * 59.99440 * 4 3 2 34 34 H 1.08999 * 109.46669 * 299.99845 * 4 3 2 35 35 H 1.08997 * 109.47003 * 59.99897 * 5 4 3 36 36 H 1.08999 * 109.47122 * 299.99568 * 5 4 3 37 37 H 1.08997 * 109.47183 * 60.00190 * 6 5 4 38 38 H 1.08999 * 109.46984 * 299.99835 * 6 5 4 39 39 H 1.08997 * 109.46914 * 60.00208 * 7 6 5 40 40 H 1.08999 * 109.47332 * 299.99805 * 7 6 5 41 41 H 0.96997 * 120.00372 * 344.99577 * 8 7 6 42 42 H 1.08001 * 119.87510 * 359.97438 * 13 12 9 43 43 H 1.07997 * 120.12712 * 180.27635 * 14 13 12 44 44 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 45 45 H 1.07995 * 120.13001 * 179.97438 * 24 15 14 46 46 H 1.07999 * 119.87507 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8850 0.0000 7 6 6.1199 4.3276 0.0000 8 7 7.5849 4.3276 -0.0006 9 16 8.4127 5.7111 -0.3785 10 8 9.7935 5.3983 -0.2577 11 8 7.8312 6.2128 -1.5742 12 6 8.0580 6.8916 0.8806 13 6 6.9779 7.7486 0.7355 14 6 6.6881 8.6706 1.7152 15 6 7.5000 8.7496 2.8617 16 6 7.2160 9.6975 3.8716 17 1 8.0025 10.0396 4.5279 18 6 5.9155 10.1924 4.0210 19 7 4.9066 9.5516 3.4889 20 14 5.6201 11.7681 4.9798 21 1 6.3572 12.8849 4.3360 22 1 4.1674 12.0758 4.9910 23 1 6.1009 11.5965 6.3743 24 6 8.5972 7.8786 2.9955 25 6 8.8642 6.9599 2.0063 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9336 0.9286 0.8891 35 1 3.7169 3.3983 0.8904 36 1 3.7163 3.3994 -0.8896 37 1 5.9732 2.3717 -0.8902 38 1 5.9732 2.3708 0.8898 39 1 5.7565 4.8414 0.8900 40 1 5.7566 4.8415 -0.8900 41 1 8.0700 3.5162 0.2165 42 1 6.3591 7.6895 -0.1477 43 1 5.8435 9.3342 1.6023 44 1 4.0053 9.8948 3.5921 45 1 9.2271 7.9309 3.8711 46 1 9.7059 6.2907 2.1066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703709217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:20 Heat of formation + Delta-G solvation = -107.757005 kcal Electronic energy + Delta-G solvation = -24716.592492 eV Core-core repulsion = 21116.840845 eV Total energy + Delta-G solvation = -3599.751647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -37.57312 -37.18298 -36.44942 -35.48672 -35.09280 -34.03809 -32.91835 -30.25330 -29.46730 -29.41007 -25.81578 -25.60717 -22.53818 -21.53357 -21.17824 -21.13549 -21.00739 -18.75913 -17.61448 -17.02538 -16.51374 -16.23079 -15.71652 -15.50621 -15.10385 -14.37818 -14.22508 -14.12828 -13.75922 -13.45309 -13.31600 -13.20799 -12.70003 -12.45197 -12.36777 -12.20409 -12.12095 -11.79098 -11.51898 -11.47363 -11.41773 -11.33908 -11.28927 -11.26082 -11.21133 -11.04367 -10.89686 -10.82364 -10.58984 -10.43299 -10.40696 -9.75530 -9.62395 -9.50021 -8.98263 -7.95797 -7.69922 -7.14709 -4.80165 1.30180 2.26238 2.87561 2.89146 2.92357 2.94885 3.65914 3.77237 4.23857 4.48073 4.55907 4.68393 4.82975 4.93168 4.96298 5.12261 5.19691 5.27458 5.34342 5.41094 5.52339 5.53216 5.58062 5.69770 5.73840 5.81896 5.84126 5.89689 5.95963 6.06426 6.07392 6.09759 6.12977 6.23392 6.29224 6.39158 6.68063 6.71130 6.91897 7.05411 7.32760 7.37044 7.43380 7.63998 7.77079 7.97046 8.31821 8.51319 8.65267 9.76716 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.003061 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.558466 B = 9143.702782 C =11700.966451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.124 4.124 7 C 0.119 3.881 8 N -1.127 6.127 9 S 2.695 3.305 10 O -0.988 6.988 11 O -0.985 6.985 12 C -0.787 4.787 13 C -0.017 4.017 14 C -0.183 4.183 15 C 0.139 3.861 16 C -0.436 4.436 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.766 5.766 20 Si 0.917 3.083 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.261 1.261 24 C -0.239 4.239 25 C 0.002 3.998 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.408 0.592 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.289 0.711 45 H 0.100 0.900 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 -12.559 -3.117 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.156 4.156 5 C -0.160 4.160 6 C -0.163 4.163 7 C -0.007 4.007 8 N -0.884 5.884 9 S 2.794 3.206 10 O -0.979 6.979 11 O -0.976 6.976 12 C -0.883 4.883 13 C -0.037 4.037 14 C -0.203 4.203 15 C 0.135 3.865 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.149 4.149 19 N -0.389 5.389 20 Si 0.740 3.260 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.186 1.186 24 C -0.260 4.260 25 C -0.018 4.018 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.241 0.759 42 H 0.121 0.879 43 H 0.140 0.860 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.802 -12.319 -3.962 14.619 hybrid contribution -0.396 0.557 1.289 1.459 sum -7.198 -11.762 -2.673 14.047 Atomic orbital electron populations 1.21787 0.96056 1.01406 1.01862 1.21542 0.95737 0.97180 1.01847 1.21644 0.95581 0.96515 1.02240 1.21595 0.95212 0.96880 1.01943 1.21568 0.94734 0.96856 1.02804 1.21770 0.95786 0.96201 1.02541 1.21228 0.79135 0.97889 1.02447 1.55707 1.15218 1.28412 1.89019 1.01153 0.72285 0.72738 0.74464 1.93484 1.31904 1.84557 1.87932 1.93478 1.78984 1.79842 1.45269 1.29165 1.13930 1.25005 1.20155 1.20267 0.93041 0.93668 0.96728 1.21334 1.03029 1.02065 0.93896 1.17852 0.89438 0.88197 0.90980 1.19907 0.94799 1.18520 1.13073 0.89497 1.26129 0.95673 0.98080 0.95066 1.69806 1.00749 1.35159 1.33146 0.86197 0.78278 0.81058 0.80430 1.18356 1.19900 1.18574 1.21048 1.03544 1.01401 1.00011 1.20166 0.94499 0.95736 0.91402 0.92735 0.92777 0.92979 0.92197 0.92154 0.91894 0.91989 0.92118 0.92056 0.91385 0.91581 0.91490 0.91414 0.91372 0.90702 0.75916 0.87903 0.85972 0.89956 0.88228 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.92 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -0.98 5.21 -26.73 -0.14 -1.12 16 4 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 5 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 6 C -0.12 -1.31 5.36 -26.73 -0.14 -1.46 16 7 C 0.12 1.64 6.23 -4.04 -0.03 1.62 16 8 N -1.13 -16.85 6.00 -10.61 -0.06 -16.91 16 9 S 2.69 51.90 5.73 -107.50 -0.62 51.29 16 10 O -0.99 -20.92 17.26 -57.17 -0.99 -21.90 16 11 O -0.99 -21.13 16.72 -57.17 -0.96 -22.08 16 12 C -0.79 -17.30 5.97 -39.29 -0.23 -17.54 16 13 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 14 C -0.18 -4.55 8.70 -38.88 -0.34 -4.89 16 15 C 0.14 3.52 5.57 -106.83 -0.60 2.92 16 16 C -0.44 -10.66 9.05 -37.74 -0.34 -11.00 16 17 H 0.09 2.01 7.91 -52.49 -0.41 1.60 16 18 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 19 N -0.77 -17.99 10.95 55.55 0.61 -17.38 16 20 Si 0.92 16.95 29.60 -169.99 -5.03 11.92 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 23 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 24 C -0.24 -5.68 9.80 -38.87 -0.38 -6.06 16 25 C 0.00 0.05 9.49 -39.66 -0.38 -0.33 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.06 7.74 -51.93 -0.40 0.66 16 41 H 0.41 5.07 8.65 -34.47 -0.30 4.78 16 42 H 0.10 2.19 7.59 -52.49 -0.40 1.79 16 43 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 44 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 45 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 46 H 0.10 2.11 7.60 -52.49 -0.40 1.71 16 LS Contribution 389.85 15.07 5.88 5.88 Total: -1.00 -29.28 389.85 -11.99 -41.27 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.71 Total: 9.18 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: -3.11 Total: -41.25 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.54 Total: -34.29 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.94 Total: -43.99 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Atomic # 16 Polarization: 51.90 SS G_CDS: -0.62 Total: 51.29 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.28 -11.99 -41.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703709217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.485 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds