Wall clock time and date at job start Tue Mar 31 2020 14:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46990 * 2 1 4 4 C 1.53000 * 109.47322 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47322 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46990 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46869 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46690 * 180.02562 * 7 6 5 9 9 S 1.65600 * 119.99765 * 164.72873 * 8 7 6 10 10 O 1.42094 * 106.40512 * 178.53760 * 9 8 7 11 11 O 1.42106 * 106.40226 * 311.45618 * 9 8 7 12 12 C 1.76198 * 107.22067 * 64.99582 * 9 8 7 13 13 C 1.38640 * 119.75037 * 269.72949 * 12 9 8 14 14 C 1.37618 * 120.24754 * 179.72238 * 13 12 9 15 15 C 1.40708 * 119.74303 * 0.56852 * 14 13 12 16 16 C 1.41395 * 120.24350 * 179.68190 * 15 14 13 17 17 H 1.07999 * 120.00421 * 204.40366 * 16 15 14 18 18 C 1.39948 * 120.00045 * 24.41232 * 16 15 14 19 19 N 1.30828 * 119.99938 * 17.83864 * 18 16 15 20 20 Si 1.86804 * 120.00206 * 197.84763 * 18 16 15 21 21 H 1.48497 * 109.46953 * 59.99362 * 20 18 16 22 22 H 1.48494 * 109.47057 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46965 * 299.99721 * 20 18 16 24 24 C 1.40718 * 119.51587 * 359.70656 * 15 14 13 25 25 C 1.37623 * 119.74191 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47183 * 299.99810 * 1 2 3 27 27 H 1.09002 * 109.47489 * 60.00143 * 1 2 3 28 28 H 1.09004 * 109.47057 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47189 * 239.99633 * 2 1 3 30 30 H 1.08999 * 109.46984 * 119.99835 * 2 1 3 31 31 H 1.08998 * 109.47455 * 59.99796 * 3 2 1 32 32 H 1.09002 * 109.46888 * 300.00225 * 3 2 1 33 33 H 1.08998 * 109.47171 * 59.99440 * 4 3 2 34 34 H 1.08999 * 109.46669 * 299.99845 * 4 3 2 35 35 H 1.08997 * 109.47003 * 59.99897 * 5 4 3 36 36 H 1.08999 * 109.47122 * 299.99568 * 5 4 3 37 37 H 1.08997 * 109.47183 * 60.00190 * 6 5 4 38 38 H 1.08999 * 109.46984 * 299.99835 * 6 5 4 39 39 H 1.08997 * 109.46914 * 60.00208 * 7 6 5 40 40 H 1.08999 * 109.47332 * 299.99805 * 7 6 5 41 41 H 0.96997 * 120.00372 * 344.99577 * 8 7 6 42 42 H 1.08001 * 119.87510 * 359.97438 * 13 12 9 43 43 H 1.07997 * 120.12712 * 180.27635 * 14 13 12 44 44 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 45 45 H 1.07995 * 120.13001 * 179.97438 * 24 15 14 46 46 H 1.07999 * 119.87507 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8850 0.0000 7 6 6.1199 4.3276 0.0000 8 7 7.5849 4.3276 -0.0006 9 16 8.4127 5.7111 -0.3785 10 8 9.7935 5.3983 -0.2577 11 8 7.8312 6.2128 -1.5742 12 6 8.0580 6.8916 0.8806 13 6 6.9779 7.7486 0.7355 14 6 6.6881 8.6706 1.7152 15 6 7.5000 8.7496 2.8617 16 6 7.2160 9.6975 3.8716 17 1 8.0025 10.0396 4.5279 18 6 5.9155 10.1924 4.0210 19 7 4.9066 9.5516 3.4889 20 14 5.6201 11.7681 4.9798 21 1 6.3572 12.8849 4.3360 22 1 4.1674 12.0758 4.9910 23 1 6.1009 11.5965 6.3743 24 6 8.5972 7.8786 2.9955 25 6 8.8642 6.9599 2.0063 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9336 0.9286 0.8891 35 1 3.7169 3.3983 0.8904 36 1 3.7163 3.3994 -0.8896 37 1 5.9732 2.3717 -0.8902 38 1 5.9732 2.3708 0.8898 39 1 5.7565 4.8414 0.8900 40 1 5.7566 4.8415 -0.8900 41 1 8.0700 3.5162 0.2165 42 1 6.3591 7.6895 -0.1477 43 1 5.8435 9.3342 1.6023 44 1 4.0053 9.8948 3.5921 45 1 9.2271 7.9309 3.8711 46 1 9.7059 6.2907 2.1066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703709217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:19 Heat of formation + Delta-G solvation = -123.822311 kcal Electronic energy + Delta-G solvation = -24717.289136 eV Core-core repulsion = 21116.840845 eV Total energy + Delta-G solvation = -3600.448291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.37824 -38.22712 -37.89807 -36.77265 -36.41035 -35.79823 -33.78038 -32.06221 -31.28806 -30.24080 -27.61515 -26.46254 -23.47061 -23.22559 -22.93099 -21.95370 -21.73453 -20.26745 -19.41833 -18.59018 -18.11409 -17.24145 -17.10363 -16.90047 -15.96868 -15.86889 -15.78384 -15.16469 -14.95749 -14.86199 -14.56111 -14.12230 -14.10167 -13.95201 -13.73237 -13.56977 -13.24971 -13.08507 -13.02646 -12.90081 -12.89213 -12.87687 -12.62914 -12.57917 -12.14683 -12.07365 -12.00576 -11.73775 -11.55635 -11.51086 -11.32976 -11.28250 -11.22958 -11.18745 -10.32657 -9.78691 -9.54766 -8.87115 -6.64645 -0.27212 0.49023 1.05966 1.35653 1.44402 1.49611 2.11284 2.27634 2.54024 2.95734 3.53047 3.58904 3.80988 4.01733 4.06235 4.18480 4.25175 4.31276 4.32519 4.41033 4.45947 4.57268 4.71705 4.77207 4.83004 4.87161 4.91143 4.94785 5.02725 5.07680 5.08807 5.11659 5.18300 5.24503 5.25429 5.33667 5.33955 5.46591 5.52647 5.54601 5.58431 5.59775 5.76708 5.93214 6.15443 6.24031 6.49079 6.68347 6.81216 8.07759 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.003061 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.558466 B = 9143.702782 C =11700.966451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.116 4.116 7 C 0.112 3.888 8 N -1.110 6.110 9 S 2.728 3.272 10 O -1.003 7.003 11 O -1.004 7.004 12 C -0.797 4.797 13 C -0.020 4.020 14 C -0.207 4.207 15 C 0.110 3.890 16 C -0.466 4.466 17 H 0.091 0.909 18 C 0.035 3.965 19 N -0.794 5.794 20 Si 0.990 3.010 21 H -0.260 1.260 22 H -0.263 1.263 23 H -0.255 1.255 24 C -0.258 4.258 25 C -0.003 4.003 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.424 0.576 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.299 0.701 45 H 0.111 0.889 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.292 -13.623 -3.073 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.014 4.014 8 N -0.871 5.871 9 S 2.823 3.177 10 O -0.993 6.993 11 O -0.994 6.994 12 C -0.890 4.890 13 C -0.040 4.040 14 C -0.228 4.228 15 C 0.106 3.894 16 C -0.493 4.493 17 H 0.109 0.891 18 C -0.184 4.184 19 N -0.417 5.417 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.187 1.187 23 H -0.179 1.179 24 C -0.278 4.278 25 C -0.022 4.022 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.260 0.740 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.110 0.890 45 H 0.129 0.871 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.128 -13.382 -3.898 15.655 hybrid contribution -0.299 0.770 1.200 1.457 sum -7.427 -12.613 -2.698 14.883 Atomic orbital electron populations 1.21797 0.95804 1.01860 1.01757 1.21535 0.95993 0.96584 1.02109 1.21636 0.95427 0.97048 1.01877 1.21552 0.95324 0.95849 1.02428 1.21565 0.94145 0.97819 1.02423 1.21739 0.96185 0.93916 1.03681 1.21411 0.78019 1.00180 1.01776 1.55273 1.15812 1.27461 1.88583 1.00206 0.71673 0.72621 0.73211 1.93458 1.33250 1.84754 1.87886 1.93455 1.79340 1.80746 1.45903 1.29657 1.12960 1.25746 1.20588 1.20455 0.93522 0.93310 0.96687 1.21355 1.03462 1.03106 0.94844 1.18212 0.90354 0.89199 0.91622 1.20194 0.95966 1.19544 1.13598 0.89129 1.26986 0.94793 1.00877 0.95793 1.69834 1.01456 1.36548 1.33819 0.85113 0.78579 0.76401 0.78963 1.18386 1.18705 1.17856 1.21275 1.03728 1.01740 1.01089 1.20465 0.95025 0.95589 0.91165 0.92985 0.92769 0.92267 0.91777 0.92021 0.92512 0.92148 0.91401 0.91746 0.92200 0.91660 0.90207 0.90388 0.92511 0.91085 0.74000 0.86703 0.87064 0.89013 0.87137 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.63 5.93 30.59 0.18 -1.45 16 3 C -0.12 -1.82 5.21 30.59 0.16 -1.66 16 4 C -0.11 -1.71 5.21 30.59 0.16 -1.55 16 5 C -0.12 -2.18 5.21 30.59 0.16 -2.02 16 6 C -0.12 -2.21 5.36 30.60 0.16 -2.05 16 7 C 0.11 2.94 6.23 86.38 0.54 3.47 16 8 N -1.11 -31.11 6.00 -187.48 -1.12 -32.24 16 9 S 2.73 101.61 5.73 -56.49 -0.32 101.29 16 10 O -1.00 -40.75 17.26 -128.00 -2.21 -42.96 16 11 O -1.00 -41.96 16.72 -128.00 -2.14 -44.10 16 12 C -0.80 -34.87 5.97 22.46 0.13 -34.73 16 13 C -0.02 -0.93 9.49 22.22 0.21 -0.71 16 14 C -0.21 -10.65 8.70 22.73 0.20 -10.46 16 15 C 0.11 5.71 5.57 -21.29 -0.12 5.59 16 16 C -0.47 -23.33 9.05 23.46 0.21 -23.12 16 17 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 18 C 0.04 1.62 5.14 85.26 0.44 2.06 16 19 N -0.79 -37.87 10.95 21.83 0.24 -37.63 16 20 Si 0.99 34.45 29.60 68.60 2.03 36.48 16 21 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 22 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 23 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 24 C -0.26 -12.42 9.80 22.73 0.22 -12.20 16 25 C 0.00 -0.12 9.49 22.22 0.21 0.09 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.93 7.74 -2.39 -0.02 1.91 16 41 H 0.42 9.43 8.65 -96.75 -0.84 8.59 16 42 H 0.12 4.95 7.59 -2.91 -0.02 4.93 16 43 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 44 H 0.30 12.67 8.30 -92.71 -0.77 11.90 16 45 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 46 H 0.13 4.95 7.60 -2.91 -0.02 4.92 16 Total: -1.00 -62.41 389.85 0.17 -62.24 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: 0.12 Total: 36.87 kcal Atomic # 6 Polarization: -83.54 SS G_CDS: 3.58 Total: -79.95 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -0.89 Total: -69.87 kcal Atomic # 8 Polarization: -82.71 SS G_CDS: -4.35 Total: -87.06 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Atomic # 16 Polarization: 101.61 SS G_CDS: -0.32 Total: 101.29 kcal Total: -62.41 0.17 -62.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703709217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.580 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds