Wall clock time and date at job start Tue Mar 31 2020 15:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47326 * 2 1 4 4 C 1.53003 * 109.46762 * 120.00316 * 2 1 3 5 5 N 1.46900 * 109.47039 * 178.50591 * 4 2 1 6 6 C 1.46899 * 110.99767 * 285.92978 * 5 4 2 7 7 C 1.50704 * 109.47205 * 75.78773 * 6 5 4 8 8 H 1.07998 * 119.99976 * 5.36182 * 7 6 5 9 9 C 1.37880 * 119.99996 * 185.35466 * 7 6 5 10 10 N 1.31510 * 119.99845 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99879 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46928 * 90.00072 * 11 9 7 13 13 H 1.48502 * 109.47013 * 209.99892 * 11 9 7 14 14 H 1.48497 * 109.47299 * 330.00222 * 11 9 7 15 15 C 1.46895 * 111.00283 * 161.97611 * 5 4 2 16 16 C 1.52999 * 109.47248 * 287.37997 * 15 5 4 17 17 S 1.81395 * 109.47349 * 178.87765 * 16 15 5 18 18 O 1.42105 * 110.54166 * 68.37297 * 17 16 15 19 19 O 1.42093 * 110.54484 * 291.62321 * 17 16 15 20 20 C 1.76200 * 104.45195 * 179.97438 * 17 16 15 21 21 C 1.38230 * 119.99668 * 90.00105 * 20 17 16 22 22 C 1.38243 * 119.99897 * 179.97438 * 21 20 17 23 23 C 1.38232 * 119.99684 * 359.97263 * 22 21 20 24 24 C 1.38232 * 120.00285 * 0.28556 * 23 22 21 25 25 C 1.38233 * 119.99758 * 359.50419 * 24 23 22 26 26 H 1.08999 * 109.47402 * 300.00067 * 1 2 3 27 27 H 1.09005 * 109.46694 * 60.00020 * 1 2 3 28 28 H 1.08999 * 109.47126 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46894 * 239.99507 * 2 1 3 30 30 H 1.09003 * 109.47023 * 64.21042 * 3 2 1 31 31 H 1.08998 * 109.47068 * 184.21399 * 3 2 1 32 32 H 1.09003 * 109.47011 * 304.21049 * 3 2 1 33 33 H 1.08991 * 109.47456 * 58.50428 * 4 2 1 34 34 H 1.09003 * 109.46943 * 298.49729 * 4 2 1 35 35 H 1.09000 * 109.47157 * 195.78477 * 6 5 4 36 36 H 1.08996 * 109.47224 * 315.78623 * 6 5 4 37 37 H 0.97004 * 119.99802 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.47436 * 167.37525 * 15 5 4 39 39 H 1.08997 * 109.46920 * 47.38004 * 15 5 4 40 40 H 1.08994 * 109.47394 * 58.87625 * 16 15 5 41 41 H 1.09007 * 109.47085 * 298.87794 * 16 15 5 42 42 H 1.07999 * 120.00304 * 359.97438 * 21 20 17 43 43 H 1.08000 * 119.99949 * 180.02562 * 22 21 20 44 44 H 1.08002 * 119.99719 * 179.97438 * 23 22 21 45 45 H 1.07996 * 119.99716 * 179.72667 * 24 23 22 46 46 H 1.08005 * 120.00107 * 180.27946 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5085 -0.7527 1.2314 6 6 4.0022 -1.7260 0.2481 7 6 3.8518 -1.1584 -1.1398 8 1 3.5130 -0.1417 -1.2736 9 6 4.1469 -1.9370 -2.2388 10 7 4.5601 -3.1748 -2.0758 11 14 3.9611 -1.2331 -3.9591 12 1 5.2382 -0.5998 -4.3754 13 1 3.6180 -2.3244 -4.9060 14 1 2.8795 -0.2156 -3.9635 15 6 4.0453 -1.0371 2.5688 16 6 3.8629 0.1908 3.4633 17 16 4.4957 -0.1716 5.1242 18 8 5.9095 -0.3125 5.0994 19 8 3.6749 -1.1339 5.7716 20 6 4.2236 1.3137 6.0322 21 6 3.0354 1.4992 6.7137 22 6 2.8220 2.6643 7.4265 23 6 3.7972 3.6435 7.4582 24 6 4.9832 3.4603 6.7722 25 6 5.1983 2.2934 6.0630 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.7396 1.9340 0.9253 31 1 3.1274 1.4433 -0.0755 32 1 1.6164 1.9776 -0.8499 33 1 1.6549 -1.7409 1.2627 34 1 1.6987 -0.1922 2.1390 35 1 5.0539 -1.9370 0.4423 36 1 3.4259 -2.6477 0.3281 37 1 4.7674 -3.7227 -2.8490 38 1 5.1061 -1.2759 2.4914 39 1 3.5129 -1.8840 3.0015 40 1 2.8040 0.4415 3.5246 41 1 4.4117 1.0327 3.0410 42 1 2.2737 0.7340 6.6894 43 1 1.8938 2.8091 7.9594 44 1 3.6304 4.5540 8.0147 45 1 5.7432 4.2273 6.7934 46 1 6.1268 2.1483 5.5308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726796891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:21 Heat of formation + Delta-G solvation = -43.554127 kcal Electronic energy + Delta-G solvation = -25896.262623 eV Core-core repulsion = 22299.295023 eV Total energy + Delta-G solvation = -3596.967601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.34994 -37.81238 -37.07250 -35.91032 -34.13769 -32.82979 -31.60092 -31.31165 -30.57333 -27.06398 -26.49323 -25.23556 -23.56575 -23.01859 -22.46957 -20.73409 -19.18762 -19.02551 -18.08033 -16.51843 -16.49850 -16.15031 -16.00839 -15.18964 -14.89172 -14.81446 -14.67305 -14.23953 -14.04865 -13.81627 -13.35057 -13.27688 -13.05365 -12.49566 -12.47359 -12.40657 -12.07164 -12.04700 -11.97553 -11.78352 -11.54609 -11.36114 -11.17579 -11.09340 -10.95148 -10.77862 -10.58450 -10.50884 -10.24670 -10.14628 -9.97620 -9.67474 -9.38498 -9.33980 -9.09462 -8.41083 -7.39287 -6.05229 -4.04076 0.02265 0.58472 0.99741 2.86500 3.19528 3.29817 3.36762 3.38919 3.85556 4.09931 4.38703 4.52127 4.58444 4.67303 4.75139 4.84052 4.96413 5.01624 5.20794 5.28192 5.37789 5.54844 5.61946 5.62729 5.66682 5.79393 5.85746 5.91532 5.92478 6.02381 6.03793 6.05784 6.19779 6.27817 6.39944 6.50334 6.52732 6.64140 6.76122 7.09931 7.15057 7.27674 7.42043 7.80458 8.03443 8.10381 8.46633 9.01721 9.57174 11.05260 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.003200 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.882008 B = 8747.617712 C = 9301.056837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.073 3.927 5 N -0.524 5.524 6 C 0.188 3.812 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.063 3.937 16 C -0.589 4.589 17 S 2.490 3.510 18 O -0.937 6.937 19 O -0.941 6.941 20 C -0.655 4.655 21 C -0.025 4.025 22 C -0.143 4.143 23 C -0.070 4.070 24 C -0.142 4.142 25 C -0.023 4.023 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.122 0.878 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.027 0.973 34 H 0.048 0.952 35 H 0.027 0.973 36 H 0.001 0.999 37 H 0.261 0.739 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.132 0.868 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 12.818 16.370 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.186 4.186 4 C -0.055 4.055 5 N -0.249 5.249 6 C 0.063 3.937 7 C -0.545 4.545 8 H 0.097 0.903 9 C -0.147 4.147 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.197 1.197 15 C -0.068 4.068 16 C -0.721 4.721 17 S 2.671 3.329 18 O -0.934 6.934 19 O -0.938 6.938 20 C -0.741 4.741 21 C -0.044 4.044 22 C -0.161 4.161 23 C -0.088 4.088 24 C -0.161 4.161 25 C -0.042 4.042 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.019 0.981 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.626 12.371 16.468 20.914 hybrid contribution -0.756 0.400 -0.784 1.160 sum -4.382 12.771 15.684 20.695 Atomic orbital electron populations 1.21839 0.97180 1.00787 1.00367 1.21596 0.92932 0.97027 1.01604 1.21648 1.02710 0.95465 0.98789 1.22027 0.88182 0.98110 0.97206 1.62118 1.07312 1.52617 1.02870 1.19894 0.95256 0.88708 0.89858 1.21359 1.43890 0.99685 0.89590 0.90251 1.25010 0.95547 0.94863 0.99275 1.69957 1.45573 1.07625 1.30447 0.86579 0.78547 0.78633 0.84197 1.20664 1.21402 1.19675 1.21717 1.01836 0.91443 0.91784 1.30357 1.13364 1.10202 1.18154 1.05634 0.75330 0.74459 0.77478 1.93568 1.28126 1.84833 1.86900 1.93555 1.70103 1.57077 1.73078 1.30731 1.02985 1.22238 1.18192 1.21015 0.94648 0.96793 0.91917 1.21313 0.99965 0.94235 1.00627 1.21492 0.93159 0.98421 0.95726 1.21324 0.98085 0.98004 0.98655 1.21041 0.97169 0.91407 0.94574 0.94083 0.93303 0.93343 0.86080 0.94844 0.90948 0.94607 0.95472 0.93346 0.95492 0.98111 0.92915 0.89535 0.94137 0.84949 0.83848 0.84081 0.85074 0.85339 0.85009 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.19 37.16 0.34 -1.84 16 2 C -0.11 -2.05 2.40 -90.62 -0.22 -2.27 16 3 C -0.13 -2.16 8.46 37.16 0.31 -1.84 16 4 C 0.07 1.32 4.24 -3.82 -0.02 1.31 16 5 N -0.52 -10.37 3.79 -236.08 -0.90 -11.26 16 6 C 0.19 4.60 4.76 -4.97 -0.02 4.57 16 7 C -0.51 -13.17 6.94 -34.44 -0.24 -13.41 16 8 H 0.08 1.99 4.69 -52.49 -0.25 1.74 16 9 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 11 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 C 0.06 1.05 4.98 -3.83 -0.02 1.03 16 16 C -0.59 -7.44 6.07 37.16 0.23 -7.22 16 17 S 2.49 32.32 5.16 -107.50 -0.55 31.76 16 18 O -0.94 -14.72 17.12 -57.54 -0.99 -15.70 16 19 O -0.94 -14.53 17.13 -57.54 -0.99 -15.52 16 20 C -0.66 -7.35 5.66 -39.59 -0.22 -7.58 16 21 C -0.02 -0.25 9.47 -39.58 -0.37 -0.63 16 22 C -0.14 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.07 -0.54 10.05 -39.59 -0.40 -0.93 16 24 C -0.14 -1.20 10.05 -39.59 -0.40 -1.60 16 25 C -0.02 -0.24 9.47 -39.59 -0.37 -0.61 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.12 2.64 4.80 -51.93 -0.25 2.39 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 1.34 6.87 -51.93 -0.36 0.99 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.03 0.52 7.77 -51.93 -0.40 0.12 16 34 H 0.05 0.75 6.29 -51.93 -0.33 0.42 16 35 H 0.03 0.70 7.64 -51.93 -0.40 0.31 16 36 H 0.00 0.03 7.75 -51.93 -0.40 -0.38 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.09 1.46 7.67 -51.93 -0.40 1.06 16 39 H 0.04 0.66 8.04 -51.93 -0.42 0.24 16 40 H 0.13 1.44 6.54 -51.93 -0.34 1.11 16 41 H 0.14 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.14 1.27 7.57 -52.49 -0.40 0.87 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.14 1.32 7.57 -52.48 -0.40 0.93 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -32.95 379.14 -11.16 -44.11 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.27 Total: 1.35 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: -1.90 Total: -31.22 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.16 Total: -36.33 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.97 Total: -31.22 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 32.32 SS G_CDS: -0.55 Total: 31.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.95 -11.16 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726796891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.554 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds