Wall clock time and date at job start Tue Mar 31 2020 15:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47326 * 2 1 4 4 C 1.53003 * 109.46762 * 120.00316 * 2 1 3 5 5 N 1.46900 * 109.47039 * 178.50591 * 4 2 1 6 6 C 1.46899 * 110.99767 * 285.92978 * 5 4 2 7 7 C 1.50704 * 109.47205 * 75.78773 * 6 5 4 8 8 H 1.07998 * 119.99976 * 5.36182 * 7 6 5 9 9 C 1.37880 * 119.99996 * 185.35466 * 7 6 5 10 10 N 1.31510 * 119.99845 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99879 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46928 * 90.00072 * 11 9 7 13 13 H 1.48502 * 109.47013 * 209.99892 * 11 9 7 14 14 H 1.48497 * 109.47299 * 330.00222 * 11 9 7 15 15 C 1.46895 * 111.00283 * 161.97611 * 5 4 2 16 16 C 1.52999 * 109.47248 * 287.37997 * 15 5 4 17 17 S 1.81395 * 109.47349 * 178.87765 * 16 15 5 18 18 O 1.42105 * 110.54166 * 68.37297 * 17 16 15 19 19 O 1.42093 * 110.54484 * 291.62321 * 17 16 15 20 20 C 1.76200 * 104.45195 * 179.97438 * 17 16 15 21 21 C 1.38230 * 119.99668 * 90.00105 * 20 17 16 22 22 C 1.38243 * 119.99897 * 179.97438 * 21 20 17 23 23 C 1.38232 * 119.99684 * 359.97263 * 22 21 20 24 24 C 1.38232 * 120.00285 * 0.28556 * 23 22 21 25 25 C 1.38233 * 119.99758 * 359.50419 * 24 23 22 26 26 H 1.08999 * 109.47402 * 300.00067 * 1 2 3 27 27 H 1.09005 * 109.46694 * 60.00020 * 1 2 3 28 28 H 1.08999 * 109.47126 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46894 * 239.99507 * 2 1 3 30 30 H 1.09003 * 109.47023 * 64.21042 * 3 2 1 31 31 H 1.08998 * 109.47068 * 184.21399 * 3 2 1 32 32 H 1.09003 * 109.47011 * 304.21049 * 3 2 1 33 33 H 1.08991 * 109.47456 * 58.50428 * 4 2 1 34 34 H 1.09003 * 109.46943 * 298.49729 * 4 2 1 35 35 H 1.09000 * 109.47157 * 195.78477 * 6 5 4 36 36 H 1.08996 * 109.47224 * 315.78623 * 6 5 4 37 37 H 0.97004 * 119.99802 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.47436 * 167.37525 * 15 5 4 39 39 H 1.08997 * 109.46920 * 47.38004 * 15 5 4 40 40 H 1.08994 * 109.47394 * 58.87625 * 16 15 5 41 41 H 1.09007 * 109.47085 * 298.87794 * 16 15 5 42 42 H 1.07999 * 120.00304 * 359.97438 * 21 20 17 43 43 H 1.08000 * 119.99949 * 180.02562 * 22 21 20 44 44 H 1.08002 * 119.99719 * 179.97438 * 23 22 21 45 45 H 1.07996 * 119.99716 * 179.72667 * 24 23 22 46 46 H 1.08005 * 120.00107 * 180.27946 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5085 -0.7527 1.2314 6 6 4.0022 -1.7260 0.2481 7 6 3.8518 -1.1584 -1.1398 8 1 3.5130 -0.1417 -1.2736 9 6 4.1469 -1.9370 -2.2388 10 7 4.5601 -3.1748 -2.0758 11 14 3.9611 -1.2331 -3.9591 12 1 5.2382 -0.5998 -4.3754 13 1 3.6180 -2.3244 -4.9060 14 1 2.8795 -0.2156 -3.9635 15 6 4.0453 -1.0371 2.5688 16 6 3.8629 0.1908 3.4633 17 16 4.4957 -0.1716 5.1242 18 8 5.9095 -0.3125 5.0994 19 8 3.6749 -1.1339 5.7716 20 6 4.2236 1.3137 6.0322 21 6 3.0354 1.4992 6.7137 22 6 2.8220 2.6643 7.4265 23 6 3.7972 3.6435 7.4582 24 6 4.9832 3.4603 6.7722 25 6 5.1983 2.2934 6.0630 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.7396 1.9340 0.9253 31 1 3.1274 1.4433 -0.0755 32 1 1.6164 1.9776 -0.8499 33 1 1.6549 -1.7409 1.2627 34 1 1.6987 -0.1922 2.1390 35 1 5.0539 -1.9370 0.4423 36 1 3.4259 -2.6477 0.3281 37 1 4.7674 -3.7227 -2.8490 38 1 5.1061 -1.2759 2.4914 39 1 3.5129 -1.8840 3.0015 40 1 2.8040 0.4415 3.5246 41 1 4.4117 1.0327 3.0410 42 1 2.2737 0.7340 6.6894 43 1 1.8938 2.8091 7.9594 44 1 3.6304 4.5540 8.0147 45 1 5.7432 4.2273 6.7934 46 1 6.1268 2.1483 5.5308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726796891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:20 Heat of formation + Delta-G solvation = -65.010144 kcal Electronic energy + Delta-G solvation = -25897.193026 eV Core-core repulsion = 22299.295023 eV Total energy + Delta-G solvation = -3597.898004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.01259 -39.36774 -38.21367 -37.05494 -35.50831 -34.82345 -32.32056 -32.03124 -31.96615 -28.90239 -27.77513 -26.70842 -24.62312 -23.90810 -23.67806 -22.24286 -20.63843 -20.04216 -18.97842 -18.44915 -17.59860 -17.19152 -16.87183 -16.54678 -16.47742 -15.92919 -15.65830 -15.53971 -15.41094 -14.80213 -14.47389 -14.45425 -14.10442 -14.00623 -13.94318 -13.64054 -13.22435 -13.20261 -13.13849 -13.11972 -12.93813 -12.72256 -12.64265 -12.41804 -12.27394 -12.18112 -12.03392 -11.84420 -11.64490 -11.55272 -11.38316 -11.19233 -10.86702 -10.46124 -10.34790 -10.00718 -9.07702 -8.13508 -6.17934 -1.00145 -0.14797 0.33671 1.43642 1.44078 1.54537 1.90055 2.42231 2.47361 2.86087 3.11870 3.18922 3.30635 3.58934 3.76607 3.91634 3.99614 4.14210 4.16887 4.31247 4.34819 4.42492 4.42840 4.54894 4.57823 4.73341 4.73566 4.82950 4.87711 4.96722 4.99984 5.10732 5.13127 5.16102 5.17274 5.24547 5.30653 5.33474 5.41561 5.48245 5.66821 5.84289 5.90304 5.90681 6.12692 6.34994 6.59500 6.95616 7.47266 8.97655 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.003200 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.882008 B = 8747.617712 C = 9301.056837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C -0.123 4.123 4 C 0.070 3.930 5 N -0.522 5.522 6 C 0.199 3.801 7 C -0.504 4.504 8 H 0.090 0.910 9 C -0.002 4.002 10 N -0.940 5.940 11 Si 0.957 3.043 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.258 1.258 15 C 0.050 3.950 16 C -0.578 4.578 17 S 2.504 3.496 18 O -0.973 6.973 19 O -0.971 6.971 20 C -0.661 4.661 21 C -0.043 4.043 22 C -0.144 4.144 23 C -0.065 4.065 24 C -0.145 4.145 25 C -0.044 4.044 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.009 0.991 34 H 0.085 0.915 35 H 0.001 0.999 36 H -0.032 1.032 37 H 0.260 0.740 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.146 0.854 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.157 0.843 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 16.526 17.638 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.180 4.180 4 C -0.058 4.058 5 N -0.246 5.246 6 C 0.073 3.927 7 C -0.542 4.542 8 H 0.108 0.892 9 C -0.200 4.200 10 N -0.581 5.581 11 Si 0.783 3.217 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.182 1.182 15 C -0.080 4.080 16 C -0.709 4.709 17 S 2.689 3.311 18 O -0.970 6.970 19 O -0.968 6.968 20 C -0.751 4.751 21 C -0.061 4.061 22 C -0.162 4.162 23 C -0.082 4.082 24 C -0.163 4.163 25 C -0.063 4.063 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.027 0.973 34 H 0.103 0.897 35 H 0.019 0.981 36 H -0.015 1.015 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.164 0.836 43 H 0.177 0.823 44 H 0.181 0.819 45 H 0.175 0.825 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.351 16.065 17.731 24.518 hybrid contribution -0.246 -0.672 -1.030 1.254 sum -5.596 15.393 16.701 23.392 Atomic orbital electron populations 1.21768 0.94685 1.01032 1.02067 1.21502 0.95116 0.97444 0.99410 1.21569 1.01137 0.94638 1.00650 1.22159 0.86817 0.97753 0.99100 1.62066 1.08614 1.50482 1.03447 1.19577 0.93296 0.88536 0.91286 1.21716 1.42369 0.99980 0.90165 0.89249 1.25869 0.95551 0.95136 1.03402 1.70104 1.47441 1.09159 1.31395 0.85549 0.78852 0.78028 0.79286 1.20268 1.21583 1.18170 1.21829 1.01200 0.93859 0.91123 1.30233 1.15272 1.08468 1.16899 1.04834 0.74079 0.74855 0.77308 1.93518 1.30170 1.85910 1.87377 1.93508 1.70425 1.59197 1.73687 1.30213 1.04370 1.21209 1.19326 1.21256 0.94402 0.97999 0.92491 1.21700 1.01277 0.93383 0.99878 1.21961 0.92247 0.99304 0.94731 1.21690 0.99170 0.97668 0.97790 1.21251 0.97175 0.92198 0.95629 0.91524 0.92423 0.93913 0.90288 0.92155 0.93241 0.93675 0.97301 0.89717 0.98135 1.01458 0.93103 0.90607 0.94075 0.82511 0.82169 0.83582 0.82325 0.81942 0.82502 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.19 71.98 0.66 -3.19 16 2 C -0.12 -4.06 2.40 -10.79 -0.03 -4.08 16 3 C -0.12 -3.80 8.46 71.98 0.61 -3.19 16 4 C 0.07 2.48 4.24 86.30 0.37 2.84 16 5 N -0.52 -20.98 3.79 -900.81 -3.42 -24.39 16 6 C 0.20 10.29 4.76 85.56 0.41 10.69 16 7 C -0.50 -26.95 6.94 25.60 0.18 -26.78 16 8 H 0.09 4.52 4.69 -2.91 -0.01 4.51 16 9 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 10 N -0.94 -56.33 13.29 21.45 0.28 -56.04 16 11 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 15 C 0.05 1.71 4.98 86.30 0.43 2.14 16 16 C -0.58 -14.03 6.07 71.98 0.44 -13.59 16 17 S 2.50 65.21 5.16 -56.49 -0.29 64.92 16 18 O -0.97 -31.54 17.12 -127.65 -2.19 -33.73 16 19 O -0.97 -30.35 17.13 -127.65 -2.19 -32.54 16 20 C -0.66 -14.01 5.66 22.27 0.13 -13.89 16 21 C -0.04 -0.77 9.47 22.27 0.21 -0.56 16 22 C -0.14 -1.88 10.05 22.27 0.22 -1.66 16 23 C -0.06 -0.73 10.05 22.27 0.22 -0.50 16 24 C -0.14 -1.99 10.05 22.27 0.22 -1.76 16 25 C -0.04 -0.83 9.47 22.27 0.21 -0.62 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 3.46 4.80 -2.38 -0.01 3.45 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.75 6.87 -2.39 -0.02 1.74 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.01 0.34 7.77 -2.39 -0.02 0.32 16 34 H 0.08 2.39 6.29 -2.39 -0.02 2.37 16 35 H 0.00 0.03 7.64 -2.39 -0.02 0.01 16 36 H -0.03 -1.85 7.75 -2.39 -0.02 -1.87 16 37 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.08 2.72 7.67 -2.38 -0.02 2.70 16 39 H 0.04 1.39 8.04 -2.39 -0.02 1.37 16 40 H 0.16 3.00 6.54 -2.39 -0.02 2.99 16 41 H 0.16 3.38 8.14 -2.39 -0.02 3.36 16 42 H 0.15 2.39 7.57 -2.91 -0.02 2.36 16 43 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 45 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 46 H 0.14 2.58 7.57 -2.91 -0.02 2.56 16 Total: -1.00 -74.39 379.14 -0.07 -74.46 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.95 Total: 15.65 kcal Atomic # 6 Polarization: -58.57 SS G_CDS: 4.74 Total: -53.82 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.13 Total: -80.44 kcal Atomic # 8 Polarization: -61.90 SS G_CDS: -4.37 Total: -66.27 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 65.21 SS G_CDS: -0.29 Total: 64.92 kcal Total: -74.39 -0.07 -74.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726796891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.449 kcal (2) G-P(sol) polarization free energy of solvation -74.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds