Wall clock time and date at job start Tue Mar 31 2020 14:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47095 * 2 1 4 4 C 1.38237 * 120.00074 * 90.00337 * 3 2 1 5 5 C 1.38235 * 119.99930 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99830 * 0.02562 * 5 4 3 7 7 S 1.76197 * 119.99710 * 179.97438 * 6 5 4 8 8 O 1.42102 * 106.40453 * 336.46144 * 7 6 5 9 9 O 1.42101 * 106.40094 * 203.53970 * 7 6 5 10 10 N 1.65603 * 107.21828 * 89.99793 * 7 6 5 11 11 C 1.46496 * 120.00339 * 269.72342 * 10 7 6 12 12 C 1.50693 * 109.47321 * 265.91855 * 11 10 7 13 13 H 1.08001 * 119.99966 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00105 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00002 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46855 * 90.00221 * 16 14 12 18 18 H 1.48505 * 109.47233 * 210.00247 * 16 14 12 19 19 H 1.48501 * 109.47158 * 330.00143 * 16 14 12 20 20 C 1.46508 * 119.99685 * 89.99935 * 10 7 6 21 21 C 1.52997 * 109.47193 * 265.99512 * 20 10 7 22 22 C 1.53000 * 109.47189 * 174.41047 * 21 20 10 23 23 C 1.53000 * 109.46926 * 294.41159 * 21 20 10 24 24 C 1.38227 * 120.00122 * 0.25173 * 6 5 4 25 25 C 1.38233 * 119.99721 * 270.01744 * 3 2 1 26 26 H 1.09005 * 109.46978 * 300.00143 * 1 2 3 27 27 H 1.08993 * 109.47220 * 59.99725 * 1 2 3 28 28 H 1.08998 * 109.47464 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46856 * 239.99575 * 2 1 3 30 30 H 1.08999 * 109.46836 * 120.00075 * 2 1 3 31 31 H 1.07996 * 119.99530 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.99766 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.47051 * 25.92026 * 11 10 7 34 34 H 1.09006 * 109.47014 * 145.91536 * 11 10 7 35 35 H 0.97006 * 119.99858 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.46873 * 25.99493 * 20 10 7 37 37 H 1.08996 * 109.46716 * 145.99011 * 20 10 7 38 38 H 1.08994 * 109.47001 * 54.40774 * 21 20 10 39 39 H 1.09000 * 109.47204 * 59.99524 * 22 21 20 40 40 H 1.08992 * 109.46905 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46765 * 299.99808 * 22 21 20 42 42 H 1.08997 * 109.47474 * 66.50937 * 23 21 20 43 43 H 1.09006 * 109.47042 * 186.51605 * 23 21 20 44 44 H 1.09005 * 109.47179 * 306.50875 * 23 21 20 45 45 H 1.08000 * 119.99994 * 179.72576 * 24 6 5 46 46 H 1.08001 * 120.00249 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3756 1.1971 6 6 2.9544 4.0272 -0.0001 7 16 3.5417 5.6884 -0.0001 8 8 3.1623 6.2482 1.2497 9 8 3.1621 6.2482 -1.2498 10 7 5.1965 5.6233 -0.0001 11 6 5.9287 5.6006 1.2685 12 6 6.3230 7.0052 1.6461 13 1 6.0553 7.8320 1.0050 14 6 7.0255 7.2347 2.8101 15 7 7.3519 6.2277 3.5905 16 14 7.5149 8.9757 3.2778 17 1 6.4399 9.5883 4.0990 18 1 8.7769 8.9421 4.0598 19 1 7.7169 9.7809 2.0465 20 6 5.9283 5.5945 -1.2690 21 6 6.2137 4.1432 -1.6603 22 6 6.8532 4.1059 -3.0498 23 6 7.1699 3.5190 -0.6419 24 6 2.7185 3.3775 -1.1971 25 6 2.2624 2.0725 -1.1972 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0832 1.5631 2.1324 32 1 2.9037 3.8848 2.1324 33 1 5.2929 5.1798 2.0475 34 1 6.8241 4.9885 1.1603 35 1 7.8459 6.3892 4.4096 36 1 5.3281 6.0689 -2.0454 37 1 6.8696 6.1327 -1.1577 38 1 5.2804 3.5805 -1.6746 39 1 7.7865 4.6687 -3.0354 40 1 7.0569 3.0721 -3.3283 41 1 6.1719 4.5506 -3.7752 42 1 6.6710 3.4399 0.3239 43 1 7.4644 2.5259 -0.9813 44 1 8.0556 4.1466 -0.5430 45 1 2.8942 3.8881 -2.1324 46 1 2.0817 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728710442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:07 Heat of formation + Delta-G solvation = -87.920889 kcal Electronic energy + Delta-G solvation = -26841.238048 eV Core-core repulsion = 23242.346560 eV Total energy + Delta-G solvation = -3598.891488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41628 -38.64456 -38.24811 -36.86584 -35.38150 -35.19084 -33.91154 -32.05610 -30.55816 -29.48230 -27.91685 -26.54140 -25.21062 -24.09862 -23.85533 -22.14777 -21.26882 -19.93734 -19.08330 -18.35862 -18.17324 -17.42544 -16.66555 -16.57464 -16.24445 -15.74315 -15.55840 -15.28582 -14.84359 -14.70436 -14.64173 -14.32440 -14.21583 -14.07370 -13.76154 -13.62439 -13.18770 -13.11818 -13.06165 -13.01774 -12.94310 -12.75905 -12.65888 -12.49705 -12.37098 -12.34312 -12.22614 -11.94834 -11.75274 -11.71958 -11.53190 -11.48444 -11.44195 -10.54854 -10.11260 -10.03223 -9.67100 -8.17807 -6.28448 -0.55752 -0.17773 0.30653 1.38707 1.41703 1.50524 2.06193 2.42023 2.53937 2.86452 3.13072 3.33678 3.72914 3.76283 3.89701 3.93597 4.08245 4.19853 4.26107 4.33741 4.34996 4.47545 4.49478 4.60278 4.73973 4.82088 4.86643 4.91890 4.96794 5.00007 5.07351 5.07963 5.10830 5.11318 5.15741 5.20339 5.23437 5.31962 5.38764 5.48488 5.51452 5.55701 5.57607 5.73368 5.88286 5.97104 6.15070 6.79012 7.39257 8.89380 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.004410 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.369280 B = 6347.676361 C = 6974.294304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.027 4.027 4 C -0.142 4.142 5 C -0.037 4.037 6 C -0.683 4.683 7 S 2.684 3.316 8 O -0.994 6.994 9 O -0.989 6.989 10 N -0.983 5.983 11 C 0.267 3.733 12 C -0.547 4.547 13 H 0.050 0.950 14 C 0.015 3.985 15 N -0.922 5.922 16 Si 0.952 3.048 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.266 1.266 20 C 0.117 3.883 21 C -0.113 4.113 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.027 4.027 25 C -0.136 4.136 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.150 0.850 32 H 0.121 0.879 33 H 0.010 0.990 34 H 0.049 0.951 35 H 0.266 0.734 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.147 0.853 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 -15.343 -11.989 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.027 4.027 4 C -0.161 4.161 5 C -0.056 4.056 6 C -0.773 4.773 7 S 2.779 3.221 8 O -0.984 6.984 9 O -0.980 6.980 10 N -0.821 5.821 11 C 0.144 3.856 12 C -0.587 4.587 13 H 0.068 0.932 14 C -0.184 4.184 15 N -0.562 5.562 16 Si 0.777 3.223 17 H -0.206 1.206 18 H -0.199 1.199 19 H -0.191 1.191 20 C -0.008 4.008 21 C -0.133 4.133 22 C -0.197 4.197 23 C -0.199 4.199 24 C -0.046 4.046 25 C -0.155 4.155 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.168 0.832 32 H 0.139 0.861 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.165 0.835 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.403 -14.601 -11.821 20.579 hybrid contribution 0.448 0.708 1.035 1.332 sum -7.955 -13.892 -10.786 19.303 Atomic orbital electron populations 1.21753 0.93613 1.02972 1.02074 1.20754 0.96865 0.90102 1.04840 1.20630 0.92241 0.97278 0.92562 1.21414 1.01064 0.93883 0.99746 1.21012 0.92933 0.95537 0.96141 1.30714 1.20078 1.25720 1.00782 1.01687 0.72941 0.75238 0.72230 1.93528 1.82520 1.77244 1.45157 1.93452 1.82653 1.77359 1.44506 1.57208 1.22565 1.89113 1.13236 1.18841 0.92268 0.96085 0.78418 1.21854 1.35385 0.94489 1.06923 0.93159 1.25666 0.95816 1.00975 0.95987 1.70005 1.40287 1.32222 1.13726 0.85656 0.77789 0.80322 0.78557 1.20646 1.19864 1.19053 1.21593 0.98147 0.97551 0.83525 1.21611 0.99677 0.95336 0.96691 1.21753 1.00914 1.02821 0.94188 1.21864 0.98932 1.00478 0.98621 1.21100 0.92476 0.95186 0.95822 1.21502 1.00566 0.93987 0.99425 0.93199 0.92488 0.90357 0.88665 0.89593 0.83246 0.86118 0.97184 0.93287 0.92469 0.89472 0.90371 0.91094 0.92328 0.91013 0.91592 0.94112 0.91497 0.93462 0.83538 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.09 -1.13 6.06 29.85 0.18 -0.95 16 3 C -0.03 -0.54 5.13 -19.87 -0.10 -0.65 16 4 C -0.14 -3.56 9.70 22.27 0.22 -3.35 16 5 C -0.04 -1.21 9.52 22.27 0.21 -1.00 16 6 C -0.68 -23.32 5.97 22.27 0.13 -23.18 16 7 S 2.68 113.89 5.65 -56.49 -0.32 113.57 16 8 O -0.99 -50.96 16.26 -128.00 -2.08 -53.04 16 9 O -0.99 -41.97 15.84 -128.00 -2.03 -44.00 16 10 N -0.98 -42.01 2.67 -519.84 -1.39 -43.40 16 11 C 0.27 13.68 4.36 85.63 0.37 14.05 16 12 C -0.55 -31.42 9.39 25.60 0.24 -31.18 16 13 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 14 C 0.02 0.86 5.46 84.65 0.46 1.32 16 15 N -0.92 -54.35 13.29 21.45 0.28 -54.07 16 16 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 C 0.12 4.11 5.19 86.38 0.45 4.56 16 21 C -0.11 -3.17 3.12 -10.79 -0.03 -3.20 16 22 C -0.14 -2.93 9.19 71.98 0.66 -2.27 16 23 C -0.14 -4.33 7.88 71.98 0.57 -3.76 16 24 C -0.03 -0.72 8.29 22.27 0.18 -0.53 16 25 C -0.14 -2.82 9.70 22.27 0.22 -2.60 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.09 0.98 8.09 -2.39 -0.02 0.96 16 31 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.12 4.37 7.62 -2.91 -0.02 4.35 16 33 H 0.01 0.57 7.64 -2.38 -0.02 0.55 16 34 H 0.05 2.50 5.43 -2.38 -0.01 2.48 16 35 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 36 H 0.09 2.86 6.93 -2.38 -0.02 2.85 16 37 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 38 H 0.07 1.90 6.86 -2.39 -0.02 1.88 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.04 1.45 6.08 -2.39 -0.01 1.43 16 43 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.05 1.52 8.11 -2.38 -0.02 1.50 16 45 H 0.15 3.57 7.61 -2.91 -0.02 3.55 16 46 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -72.59 383.20 1.91 -70.68 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.94 Total: 16.70 kcal Atomic # 6 Polarization: -58.21 SS G_CDS: 4.47 Total: -53.74 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -1.11 Total: -97.47 kcal Atomic # 8 Polarization: -92.94 SS G_CDS: -4.11 Total: -97.04 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 113.89 SS G_CDS: -0.32 Total: 113.57 kcal Total: -72.59 1.91 -70.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728710442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.237 kcal (2) G-P(sol) polarization free energy of solvation -72.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds