Wall clock time and date at job start Tue Mar 31 2020 15:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46807 * 2 1 4 4 C 1.52995 * 109.47364 * 119.99908 * 2 1 3 5 5 H 1.08997 * 109.47154 * 59.99764 * 4 2 1 6 6 O 1.45200 * 109.47360 * 300.00334 * 4 2 1 7 7 C 1.34702 * 117.00354 * 89.99619 * 6 4 2 8 8 O 1.21471 * 119.99672 * 0.02562 * 7 6 4 9 9 C 1.47765 * 120.00449 * 180.02562 * 7 6 4 10 10 C 1.39966 * 120.03133 * 359.72207 * 9 7 6 11 11 C 1.38315 * 120.35512 * 179.76686 * 10 9 7 12 12 C 1.37754 * 120.41868 * 0.51427 * 11 10 9 13 13 C 1.40751 * 120.05004 * 359.74551 * 12 11 10 14 14 C 1.41440 * 120.17819 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99811 * 24.44081 * 14 13 12 16 16 C 1.39936 * 120.00379 * 204.43574 * 14 13 12 17 17 N 1.30832 * 119.99399 * 17.88362 * 16 14 13 18 18 Si 1.86796 * 120.00316 * 197.88040 * 16 14 13 19 19 H 1.48499 * 109.47148 * 90.00251 * 18 16 14 20 20 H 1.48497 * 109.47027 * 210.00395 * 18 16 14 21 21 H 1.48505 * 109.47092 * 330.00432 * 18 16 14 22 22 C 1.39053 * 120.03153 * 180.02562 * 9 7 6 23 23 C 1.50700 * 109.47459 * 180.02562 * 4 2 1 24 24 C 1.38226 * 119.61915 * 124.97710 * 23 4 2 25 25 C 1.38630 * 119.15982 * 179.79457 * 24 23 4 26 26 C 1.38679 * 118.41791 * 0.47267 * 25 24 23 27 27 C 1.38182 * 119.16299 * 359.50417 * 26 25 24 28 28 N 1.31852 * 119.61280 * 305.00118 * 23 4 2 29 29 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46984 * 299.99634 * 1 2 3 31 31 H 1.08995 * 109.47410 * 59.99880 * 1 2 3 32 32 H 1.08992 * 109.47090 * 240.00354 * 2 1 3 33 33 H 1.08997 * 109.46987 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47233 * 300.00228 * 3 2 1 35 35 H 1.09004 * 109.46852 * 59.99902 * 3 2 1 36 36 H 1.08001 * 119.82169 * 0.02562 * 10 9 7 37 37 H 1.08005 * 119.79021 * 180.26156 * 11 10 9 38 38 H 1.08004 * 119.97784 * 179.76655 * 12 11 10 39 39 H 0.97007 * 119.99388 * 179.97438 * 17 16 14 40 40 H 1.07997 * 120.20711 * 359.95257 * 22 9 7 41 41 H 1.07993 * 120.42169 * 0.03979 * 24 23 4 42 42 H 1.07996 * 120.78871 * 180.23632 * 25 24 23 43 43 H 1.08000 * 120.41364 * 179.78547 * 26 25 24 44 44 H 1.07996 * 119.61311 * 180.25542 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -1.7488 1.2493 6 8 1.5560 -0.0368 2.4348 7 6 0.3722 -0.4414 2.9341 8 8 -0.2388 -1.3418 2.3942 9 6 -0.1831 0.2098 4.1387 10 6 0.5232 1.2434 4.7648 11 6 0.0074 1.8609 5.8898 12 6 -1.2018 1.4592 6.4134 13 6 -1.9241 0.4180 5.8009 14 6 -3.1662 0.0037 6.3359 15 1 -3.7520 0.6873 6.9325 16 6 -3.6360 -1.2916 6.0920 17 7 -2.8100 -2.2213 5.6857 18 14 -5.4424 -1.6934 6.3468 19 1 -6.1857 -1.4535 5.0838 20 1 -5.5818 -3.1185 6.7401 21 1 -5.9957 -0.8275 7.4189 22 6 -1.4048 -0.2078 4.6550 23 6 3.5470 -0.7207 1.2495 24 6 4.2298 -0.2123 2.3386 25 6 5.6160 -0.2204 2.3307 26 6 6.2667 -0.7328 1.2184 27 6 5.5170 -1.2243 0.1668 28 7 4.1990 -1.2047 0.2107 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6765 1.9564 0.8900 36 1 1.4741 1.5632 4.3648 37 1 0.5581 2.6603 6.3632 38 1 -1.5961 1.9438 7.2944 39 1 -3.1357 -3.1194 5.5170 40 1 -1.9515 -1.0077 4.1778 41 1 3.6902 0.1826 3.1866 42 1 6.1759 0.1666 3.1692 43 1 7.3457 -0.7517 1.1765 44 1 6.0162 -1.6289 -0.7013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733689593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:56 Heat of formation + Delta-G solvation = -42.678192 kcal Electronic energy + Delta-G solvation = -27250.117026 eV Core-core repulsion = 23517.743457 eV Total energy + Delta-G solvation = -3732.373569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74760 -39.68745 -37.56672 -36.30029 -34.59766 -33.76189 -32.51362 -31.61480 -30.33938 -29.54053 -26.96948 -26.92386 -25.38583 -23.82731 -23.12679 -22.27993 -21.03863 -20.17680 -19.39145 -17.91287 -17.42212 -16.48288 -16.31070 -15.94072 -15.69547 -15.43251 -14.91795 -14.64273 -14.37300 -14.05953 -13.75532 -13.44254 -13.24487 -13.18411 -13.03235 -12.68448 -12.54282 -12.04100 -11.90776 -11.78518 -11.57582 -11.51370 -11.22799 -11.14604 -10.82988 -10.77014 -10.67345 -10.54591 -10.27377 -10.14752 -9.92533 -9.76796 -9.50723 -9.47309 -9.27654 -8.99296 -7.78301 -7.59741 -6.86483 -4.47440 0.99372 1.19027 1.94750 2.74765 2.98439 3.04771 3.07887 3.10956 3.56252 3.68500 3.87628 4.24912 4.54008 4.60971 4.72635 4.88631 4.98832 5.07149 5.13948 5.17940 5.43229 5.50536 5.50878 5.68936 5.74308 5.77552 5.83521 6.01024 6.02812 6.08458 6.11133 6.14403 6.17601 6.35067 6.44174 6.56322 6.58304 6.63344 6.89650 6.91884 6.97696 7.13521 7.27203 7.63978 7.71401 7.85556 7.87358 8.06727 8.40662 8.52527 8.73271 8.75331 10.08685 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018079 B = 0.003217 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.356084 B = 8701.284786 C = 9177.920610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.142 4.142 4 C 0.143 3.857 5 H 0.102 0.898 6 O -0.346 6.346 7 C 0.514 3.486 8 O -0.510 6.510 9 C -0.113 4.113 10 C -0.196 4.196 11 C -0.103 4.103 12 C -0.203 4.203 13 C 0.096 3.904 14 C -0.460 4.460 15 H 0.083 0.917 16 C 0.073 3.927 17 N -0.785 5.785 18 Si 0.911 3.089 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.089 4.089 23 C 0.137 3.863 24 C -0.149 4.149 25 C -0.076 4.076 26 C -0.179 4.179 27 C 0.098 3.902 28 N -0.477 5.477 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.285 0.715 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.896 3.031 -8.355 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.199 4.199 4 C 0.087 3.913 5 H 0.119 0.881 6 O -0.264 6.264 7 C 0.361 3.639 8 O -0.398 6.398 9 C -0.115 4.115 10 C -0.216 4.216 11 C -0.121 4.121 12 C -0.222 4.222 13 C 0.093 3.907 14 C -0.488 4.488 15 H 0.101 0.899 16 C -0.146 4.146 17 N -0.410 5.410 18 Si 0.735 3.265 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.108 4.108 23 C 0.000 4.000 24 C -0.169 4.169 25 C -0.102 4.102 26 C -0.199 4.199 27 C -0.059 4.059 28 N -0.187 5.187 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.255 2.160 -9.285 15.526 hybrid contribution -0.100 -0.084 0.817 0.828 sum 12.155 2.076 -8.468 14.958 Atomic orbital electron populations 1.21938 0.93916 1.02894 1.01752 1.21430 0.96698 0.96933 0.96441 1.21771 1.00315 0.95675 1.02152 1.21078 0.87845 0.98227 0.84170 0.88068 1.86567 1.37893 1.59852 1.42058 1.21813 0.77910 0.80584 0.83617 1.90769 1.59386 1.29642 1.60039 1.18810 0.97955 1.00405 0.94309 1.20533 1.00678 1.00435 0.99905 1.20498 0.96251 0.99040 0.96311 1.21180 0.96167 1.03601 1.01290 1.17541 0.92500 0.90643 0.89968 1.19586 1.02968 0.97423 1.28861 0.89928 1.25965 0.99895 0.95960 0.92757 1.69781 1.36134 1.03011 1.32050 0.86254 0.82145 0.78247 0.79808 1.19108 1.20204 1.18539 1.21662 0.93474 1.00381 0.95279 1.20765 0.94977 0.94147 0.90108 1.22086 0.94689 0.99797 1.00312 1.21640 0.94427 0.96158 0.97936 1.22132 1.01362 1.01156 0.95278 1.22664 0.89022 0.96169 0.98031 1.67226 1.10091 1.15393 1.26010 0.91542 0.92496 0.92740 0.89097 0.93316 0.92751 0.91775 0.87996 0.88603 0.88387 0.90385 0.84641 0.83515 0.84710 0.84918 0.82680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 7.79 37.16 0.29 -2.01 16 2 C -0.10 -1.39 2.68 -90.62 -0.24 -1.63 16 3 C -0.14 -1.89 8.80 37.16 0.33 -1.56 16 4 C 0.14 2.29 2.48 -27.89 -0.07 2.23 16 5 H 0.10 1.78 7.16 -51.93 -0.37 1.41 16 6 O -0.35 -6.23 6.77 -40.50 -0.27 -6.50 16 7 C 0.51 11.00 6.17 34.63 0.21 11.21 16 8 O -0.51 -11.78 13.51 -19.24 -0.26 -12.04 16 9 C -0.11 -2.63 5.87 -105.05 -0.62 -3.25 16 10 C -0.20 -4.14 9.62 -38.91 -0.37 -4.51 16 11 C -0.10 -2.15 10.01 -39.73 -0.40 -2.55 16 12 C -0.20 -4.67 9.78 -38.81 -0.38 -5.05 16 13 C 0.10 2.46 5.57 -106.87 -0.60 1.87 16 14 C -0.46 -11.74 9.05 -37.73 -0.34 -12.08 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 16 C 0.07 1.80 5.14 -17.34 -0.09 1.72 16 17 N -0.79 -20.25 10.96 55.55 0.61 -19.64 16 18 Si 0.91 18.38 29.60 -169.99 -5.03 13.35 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 22 C -0.09 -2.28 8.24 -38.42 -0.32 -2.60 16 23 C 0.14 1.98 4.91 -82.59 -0.41 1.57 16 24 C -0.15 -1.97 9.42 -39.44 -0.37 -2.34 16 25 C -0.08 -0.79 10.18 -39.27 -0.40 -1.19 16 26 C -0.18 -1.66 10.11 -39.44 -0.40 -2.06 16 27 C 0.10 1.03 11.18 -17.55 -0.20 0.84 16 28 N -0.48 -6.42 9.88 -9.47 -0.09 -6.52 16 29 H 0.07 1.10 7.50 -51.93 -0.39 0.71 16 30 H 0.06 1.01 6.16 -51.93 -0.32 0.69 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.24 7.95 -51.93 -0.41 0.83 16 33 H 0.05 0.64 7.21 -51.93 -0.37 0.26 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 36 H 0.10 1.90 7.59 -52.49 -0.40 1.51 16 37 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 39 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 40 H 0.14 3.75 5.74 -52.49 -0.30 3.44 16 41 H 0.15 2.00 7.00 -52.49 -0.37 1.64 16 42 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -28.03 365.79 -9.74 -37.77 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.84 Total: 9.46 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -4.36 Total: -21.39 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.51 Total: -26.16 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.53 Total: -18.55 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.03 -9.74 -37.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733689593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.905 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds